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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA synthesis involved in DNA repair
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Accession:GO:0000731 term browser browse the term
Definition:Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
Synonyms:narrow_synonym: mitotic DNA repair synthesis
 broad_synonym: DNA repair synthesis
 related_synonym: DNA synthesis during DNA repair


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DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN2D cyclin dependent kinase inhibitor 2D IEA Ensembl GO_REF:0000107 NCBI chr20:50,607,382...50,609,929
Ensembl chr20:50,607,674...50,609,482
JBrowse link
G CLCF1 cardiotrophin like cytokine factor 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr18:50,084,120...50,093,825
Ensembl chr18:50,083,915...50,102,651
JBrowse link
G HROB homologous recombination factor with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr 9:19,230,345...19,245,518
Ensembl chr 9:19,230,399...19,245,624
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025), (PMID:3335506)
(PMID:1730053)
UniProt
UniProtKB
PMID:1730053, PMID:3335506, PMID:24191025 NCBI chr 1:106,302,583...106,331,353
Ensembl chr 1:106,302,574...106,331,385
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr26:433,990...481,018
Ensembl chr26:433,879...479,917
JBrowse link
G POLH DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chr12:12,034,544...12,070,305
Ensembl chr12:12,034,583...12,069,707
JBrowse link
G SIRT1 sirtuin 1 ISO (MGI:MGI:5297784|PMID:17612497) UniProtKB PMID:17612497 MGI:MGI:5297784 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G WRN WRN RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 IEA Ensembl GO_REF:0000107 NCBI chr35:3,103,507...3,127,657
Ensembl chr35:3,103,418...3,127,504
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:23,753,918...23,805,306
Ensembl chr21:23,754,278...23,802,104
JBrowse link
G TREX1 three prime repair exonuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025) UniProt PMID:24191025 NCBI chr 1:106,302,583...106,331,353
Ensembl chr 1:106,302,574...106,331,385
JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:42,597,792...42,607,576
Ensembl chr 9:42,597,792...42,607,576
JBrowse link
G REV1 REV1 DNA directed polymerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:43,150,885...43,247,324
Ensembl chr10:42,586,394...43,247,328
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 AF4/FMR2 family member 3 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr10:42,587,173...43,111,739
Ensembl chr10:42,586,394...43,247,328
JBrowse link
G POLH DNA polymerase eta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:12,034,544...12,070,305
Ensembl chr12:12,034,583...12,069,707
JBrowse link
G POLK DNA polymerase kappa IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:30,793,893...30,860,240
Ensembl chr 3:30,712,571...30,859,106
JBrowse link
G PRIMPOL primase and DNA directed polymerase IEA Ensembl GO_REF:0000107 NCBI chr16:45,861,244...45,920,183
Ensembl chr16:45,856,042...45,918,761
JBrowse link
G REV1 REV1 DNA directed polymerase IBA
IEA
(PMID:21873635) GO_Central
Ensembl
InterPro
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr10:43,150,885...43,247,324
Ensembl chr10:42,586,394...43,247,328
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:67,776,285...67,953,337
Ensembl chr12:67,756,924...67,953,553
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102152531 synaptonemal complex protein 3-like ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G SPATA22 spermatogenesis associated 22 IEA InterPro GO_REF:0000002 NCBI chr 9:47,322,817...47,338,202
Ensembl chr 9:47,322,820...47,338,108
JBrowse link
G SYCP1 synaptonemal complex protein 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:52,538,909...52,681,495
Ensembl chr17:52,539,615...52,648,133
JBrowse link
G TEX12 testis expressed 12 IEA Ensembl GO_REF:0000107 NCBI chr 5:20,968,201...20,972,710
Ensembl chr 5:20,968,185...20,972,850
JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTL denticleless E3 ubiquitin protein ligase homolog IEA Ensembl GO_REF:0000107 NCBI chr 7:10,323,842...10,368,529
Ensembl chr 7:10,323,559...10,369,560
JBrowse link
G FAAP20 FA core complex associated protein 20 ISO (PMID:22266823) UniProtKB PMID:22266823 NCBI chr 5:57,114,784...57,122,854 JBrowse link
G PCLAF PCNA clamp associated factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:28,832,388...28,846,824 JBrowse link
G PCNA proliferating cell nuclear antigen IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G POLI DNA polymerase iota IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:21,162,657...21,188,328
Ensembl chr 1:21,163,140...21,187,947
JBrowse link
G POLK DNA polymerase kappa IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:30,793,893...30,860,240
Ensembl chr 3:30,712,571...30,859,106
JBrowse link
G POLN DNA polymerase nu IEA Ensembl GO_REF:0000107 NCBI chr 3:61,946,295...62,104,112
Ensembl chr 3:61,962,193...62,102,264
JBrowse link
G PRIMPOL primase and DNA directed polymerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:45,861,244...45,920,183
Ensembl chr16:45,856,042...45,918,761
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit IEA InterPro GO_REF:0000002 NCBI chr12:67,776,285...67,953,337
Ensembl chr12:67,756,924...67,953,553
JBrowse link
G SPRTN SprT-like N-terminal domain IEA Ensembl GO_REF:0000107 NCBI chr 4:8,120,151...8,133,402
Ensembl chr 4:8,120,351...8,133,191
JBrowse link
G VCP valosin containing protein IEA Ensembl GO_REF:0000107 NCBI chr11:51,636,986...51,651,749
Ensembl chr11:51,637,411...51,651,714
JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:38,933,721...38,959,306
Ensembl chr 8:38,933,805...38,959,306
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      cellular metabolic process 9650
        cellular macromolecule metabolic process 7480
          DNA metabolic process 809
            DNA repair 443
              DNA synthesis involved in DNA repair 31
                DNA synthesis involved in UV-damage excision repair 3
                DNA synthesis involved in double-strand break repair via homologous recombination 0
                DNA synthesis involved in double-strand break repair via single-strand annealing 0
                meiotic DNA repair synthesis + 4
                translesion synthesis + 17
Path 2
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      cellular metabolic process 9650
        cellular aromatic compound metabolic process 5119
          nucleobase-containing compound metabolic process 4916
            nucleic acid metabolic process 4467
              DNA metabolic process 809
                DNA repair 443
                  DNA synthesis involved in DNA repair 31
                    DNA synthesis involved in UV-damage excision repair 3
                    DNA synthesis involved in double-strand break repair via homologous recombination 0
                    DNA synthesis involved in double-strand break repair via single-strand annealing 0
                    meiotic DNA repair synthesis + 4
                    translesion synthesis + 17
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.