Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:DNA synthesis involved in DNA repair
go back to main search page
Accession:GO:0000731 term browser browse the term
Definition:Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
Synonyms:narrow_synonym: mitotic DNA repair synthesis
 broad_synonym: DNA repair synthesis
 related_synonym: DNA synthesis during DNA repair


show annotations for term's descendants           Sort by:
 
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:21,288,459...21,291,421
Ensembl chr 9:21,288,410...21,291,407
JBrowse link
G Hrob homologous recombination factor with OB-fold ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:102,248,857...102,265,183
Ensembl chr11:102,248,882...102,265,187
JBrowse link
G Pola1 polymerase (DNA directed), alpha 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:93,304,766...93,632,387
Ensembl chr  X:93,304,767...93,632,155
JBrowse link
G Pold1 polymerase (DNA directed), delta 1, catalytic subunit ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:44,532,744...44,548,815
Ensembl chr 7:44,532,746...44,548,849
JBrowse link
G Pold4 polymerase (DNA-directed), delta 4 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:4,231,893...4,233,634
Ensembl chr19:4,231,899...4,233,634
JBrowse link
G Pole polymerase (DNA directed), epsilon ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:110,286,319...110,337,468
Ensembl chr 5:110,286,306...110,337,474
JBrowse link
G Polh polymerase (DNA directed), eta (RAD 30 related) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:46,171,355...46,202,641
Ensembl chr17:46,171,355...46,202,645
JBrowse link
G Sirt1 sirtuin 1 IMP (MGI:MGI:5297784|PMID:17612497) UniProtKB PMID:17612497 MGI:MGI:5297784 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
G Wrn Werner syndrome RecQ like helicase ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:33,234,372...33,385,543
Ensembl chr 8:33,234,384...33,385,527
JBrowse link
G Wrnip1 Werner helicase interacting protein 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:32,802,030...32,822,610
Ensembl chr13:32,802,038...32,822,609
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 polymerase (DNA directed), alpha 1 NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chr  X:93,304,766...93,632,387
Ensembl chr  X:93,304,767...93,632,155
JBrowse link
G Pold3 polymerase (DNA-directed), delta 3, accessory subunit IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 7:100,082,110...100,121,502
Ensembl chr 7:100,082,111...100,121,565
JBrowse link
G Trex1 three prime repair exonuclease 1 IMP (MGI:MGI:5562498|PMID:23993650) MGI PMID:23993650 MGI:MGI:5562498 NCBI chr 9:109,057,932...109,059,723
Ensembl chr 9:109,057,933...109,059,734
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 polymerase (DNA directed), delta 1, catalytic subunit ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:44,532,744...44,548,815
Ensembl chr 7:44,532,746...44,548,849
JBrowse link
G Poldip2 polymerase (DNA-directed), delta interacting protein 2 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr11:78,512,296...78,522,736
Ensembl chr11:78,512,193...78,522,736
JBrowse link
G Rev1 REV1, DNA directed polymerase IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 1:38,052,786...38,129,921
Ensembl chr 1:38,052,786...38,129,801
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pole2 polymerase (DNA directed), epsilon 2 (p59 subunit) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr12:69,201,773...69,228,205
Ensembl chr12:69,201,773...69,228,195
JBrowse link
G Polh polymerase (DNA directed), eta (RAD 30 related) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr17:46,171,355...46,202,641
Ensembl chr17:46,171,355...46,202,645
JBrowse link
G Polk polymerase (DNA directed), kappa ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr13:96,480,687...96,542,579
Ensembl chr13:96,480,690...96,542,579
JBrowse link
G Primpol primase and polymerase (DNA-directed) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:46,575,579...46,617,227
Ensembl chr 8:46,575,594...46,617,212
JBrowse link
G Rev1 REV1, DNA directed polymerase IDA
IBA
(MGI:MGI:2157239|PMID:11711549)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11711549, PMID:21873635 MGI:MGI:2157239, MGI:MGI:6201960 NCBI chr 1:38,052,786...38,129,921
Ensembl chr 1:38,052,786...38,129,801
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:39,731,561...39,875,211
Ensembl chr10:39,732,118...39,875,211
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 IMP (MGI:MGI:5314623|PMID:22011390) MGI PMID:22011390 MGI:MGI:5314623 NCBI chr11:73,326,560...73,346,592
Ensembl chr11:73,329,741...73,346,044
JBrowse link
G Sycp1 synaptonemal complex protein 1 IMP
IBA
IGI
(MGI:MGI:5315075|PMID:22164254)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:22164254 MGI:MGI:5315075, MGI:MGI:6201960 NCBI chr 3:102,818,499...102,936,100
Ensembl chr 3:102,818,499...102,936,100
JBrowse link
G Sycp3 synaptonemal complex protein 3 IGI (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr10:88,459,587...88,473,236
Ensembl chr10:88,459,569...88,473,236
JBrowse link
G Tex12 testis expressed 12 IGI
IMP
(MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr 9:50,557,148...50,561,268
Ensembl chr 9:50,556,819...50,561,325
JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtl denticleless E3 ubiquitin protein ligase ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:191,537,356...191,575,544
Ensembl chr 1:191,537,356...191,575,544
JBrowse link
G Faap20 Fanconi anemia core complex associated protein 20 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:155,246,904...155,256,687
Ensembl chr 4:155,249,802...155,256,687
JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:76,232,995...76,243,440
Ensembl chr15:76,231,174...76,243,441
JBrowse link
G Pclaf PCNA clamp associated factor ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 9:65,890,323...65,903,551
Ensembl chr 9:65,890,237...65,903,266
JBrowse link
G Pcna proliferating cell nuclear antigen ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 2:132,249,286...132,253,180
Ensembl chr 2:132,249,162...132,253,314
JBrowse link
G Poli polymerase (DNA directed), iota IMP
IBA
(MGI:MGI:3695544|PMID:17114294)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:17114294, PMID:21873635 MGI:MGI:3695544, MGI:MGI:6201960 NCBI chr18:70,508,680...70,534,950
Ensembl chr18:70,508,680...70,530,620
JBrowse link
G Poln DNA polymerase N ISO (PMID:19908865)
(PMID:20102227)
UniProtKB PMID:19908865, PMID:20102227 NCBI chr 5:34,007,179...34,169,526
Ensembl chr 5:34,007,179...34,169,448
JBrowse link
G Primpol primase and polymerase (DNA-directed) ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 8:46,575,579...46,617,227
Ensembl chr 8:46,575,594...46,617,212
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr10:39,731,561...39,875,211
Ensembl chr10:39,732,118...39,875,211
JBrowse link
G Sprtn SprT-like N-terminal domain ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:124,897,771...124,906,161
Ensembl chr 8:124,897,886...124,906,161
JBrowse link
G Vcp valosin containing protein ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:42,979,964...43,000,507
Ensembl chr 4:42,979,963...43,000,507
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:76,370,051...76,396,955
Ensembl chr12:76,370,266...76,396,950
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23392
    metabolic process 11300
      cellular metabolic process 10092
        cellular macromolecule metabolic process 7751
          DNA metabolic process 873
            DNA repair 498
              DNA synthesis involved in DNA repair 32
                DNA synthesis involved in UV-damage excision repair 3
                DNA synthesis involved in double-strand break repair via homologous recombination 0
                DNA synthesis involved in double-strand break repair via single-strand annealing 0
                meiotic DNA repair synthesis + 4
                translesion synthesis + 18
Path 2
Term Annotations click to browse term
  biological_process 23392
    metabolic process 11300
      cellular metabolic process 10092
        cellular aromatic compound metabolic process 5437
          nucleobase-containing compound metabolic process 5205
            nucleic acid metabolic process 4765
              DNA metabolic process 873
                DNA repair 498
                  DNA synthesis involved in DNA repair 32
                    DNA synthesis involved in UV-damage excision repair 3
                    DNA synthesis involved in double-strand break repair via homologous recombination 0
                    DNA synthesis involved in double-strand break repair via single-strand annealing 0
                    meiotic DNA repair synthesis + 4
                    translesion synthesis + 18
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.