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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA synthesis involved in DNA repair
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Accession:GO:0000731 term browser browse the term
Definition:Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
Synonyms:narrow_synonym: mitotic DNA repair synthesis
 broad_synonym: DNA repair synthesis
 related_synonym: DNA synthesis during DNA repair


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DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN2D cyclin dependent kinase inhibitor 2D IEA Ensembl GO_REF:0000107 NCBI chr 2:69,337,428...69,339,998
Ensembl chr 2:69,337,855...69,339,999
JBrowse link
G HROB homologous recombination factor with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr12:19,044,569...19,077,877
Ensembl chr12:19,043,984...19,077,829
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chr  X:20,756,674...21,064,265
Ensembl chr  X:20,756,201...21,102,061
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:1730053)
(PMID:24191025), (PMID:3335506)
UniProtKB
UniProt
PMID:1730053, PMID:3335506, PMID:24191025 NCBI chr 6:55,247,799...55,272,087
Ensembl chr 6:55,247,861...55,272,166
JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:5,160,906...5,162,753 JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr14:22,798,146...22,852,818
Ensembl chr14:22,798,192...22,853,547
JBrowse link
G POLH DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chr 7:38,569,211...38,601,794
Ensembl chr 7:38,567,775...38,601,790
JBrowse link
G SIRT1 sirtuin 1 IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G WRN WRN RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:1,656,952...1,667,885
Ensembl chr 7:1,656,442...1,667,879
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chr  X:20,756,674...21,064,265
Ensembl chr  X:20,756,201...21,102,061
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:8,906,491...8,956,845
Ensembl chr 9:8,906,459...8,958,323
JBrowse link
G TREX1 three prime repair exonuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr13:31,177,604...31,180,764
Ensembl chr13:31,178,601...31,180,592
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 AF4/FMR2 family member 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:54,135,476...54,730,201
Ensembl chr 3:54,135,532...54,862,224
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025) UniProt PMID:24191025 NCBI chr 6:55,247,799...55,272,087
Ensembl chr 6:55,247,861...55,272,166
JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:44,626,447...44,636,302
Ensembl chr12:44,625,603...44,636,289
JBrowse link
G REV1 REV1 DNA directed polymerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:54,775,602...54,862,704
Ensembl chr 3:54,135,532...54,862,224
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 AF4/FMR2 family member 3 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:54,135,476...54,730,201
Ensembl chr 3:54,135,532...54,862,224
JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:179,495,278...179,529,891
Ensembl chr 1:179,482,207...179,529,896
JBrowse link
G POLH DNA polymerase eta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:38,569,211...38,601,794
Ensembl chr 7:38,567,775...38,601,790
JBrowse link
G POLK DNA polymerase kappa IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:84,555,648...84,619,490
Ensembl chr 2:84,538,050...84,656,234
JBrowse link
G PRIMPOL primase and DNA directed polymerase IEA Ensembl GO_REF:0000107 NCBI chr15:45,764,261...45,851,052
Ensembl chr15:45,709,710...45,851,421
JBrowse link
G REV1 REV1 DNA directed polymerase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:54,775,602...54,862,704
Ensembl chr 3:54,135,532...54,862,224
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:77,196,592...77,400,551
Ensembl chr 1:77,197,409...77,400,137
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPATA22 spermatogenesis associated 22 IEA InterPro GO_REF:0000002 NCBI chr12:49,573,050...49,609,232 JBrowse link
G SYCP1 synaptonemal complex protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,592,691...105,729,774
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
G TEX12 testis expressed 12 IEA Ensembl GO_REF:0000107 NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,177...39,916,486
JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTL denticleless E3 ubiquitin protein ligase homolog IEA Ensembl GO_REF:0000107 NCBI chr 9:131,225,840...131,275,426
Ensembl chr 9:131,182,423...131,275,451
JBrowse link
G FAAP20 FA core complex associated protein 20 ISO (PMID:22266823) UniProtKB PMID:22266823 NCBI chr 6:64,160,760...64,169,663 JBrowse link
G PARP10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:24695737) UniProt PMID:24695737 NCBI chr 4:688,511...695,808 JBrowse link
G PCLAF PCNA clamp associated factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:107,659,509...107,669,477
Ensembl chr 1:107,659,501...107,670,978
JBrowse link
G PCNA proliferating cell nuclear antigen IEA Ensembl GO_REF:0000107 NCBI chr17:14,137,746...14,142,584
Ensembl chr17:14,125,814...14,185,276
JBrowse link
G POLI DNA polymerase iota IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:103,793,779...103,820,365
Ensembl chr 1:103,794,071...103,824,646
JBrowse link
G POLK DNA polymerase kappa IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:84,555,648...84,619,490
Ensembl chr 2:84,538,050...84,656,234
JBrowse link
G POLN DNA polymerase nu IEA Ensembl GO_REF:0000107 NCBI chr 8:1,073,337...1,198,538
Ensembl chr 8:1,069,054...1,198,445
JBrowse link
G PRIMPOL primase and DNA directed polymerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:45,764,261...45,851,052
Ensembl chr15:45,709,710...45,851,421
JBrowse link
G SPRTN SprT-like N-terminal domain IEA Ensembl GO_REF:0000107 NCBI chr14:59,177,801...59,192,221
Ensembl chr14:59,171,170...59,192,270
JBrowse link
G VCP valosin containing protein ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,796,446...235,876,321
JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:88,575,563...88,602,726
Ensembl chr 7:88,576,008...88,610,480
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10584
      cellular metabolic process 9578
        cellular macromolecule metabolic process 7422
          DNA metabolic process 821
            DNA repair 447
              DNA synthesis involved in DNA repair 33
                DNA synthesis involved in UV-damage excision repair 3
                DNA synthesis involved in double-strand break repair via homologous recombination 0
                DNA synthesis involved in double-strand break repair via single-strand annealing 0
                meiotic DNA repair synthesis + 4
                translesion synthesis + 19
Path 2
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10584
      cellular metabolic process 9578
        cellular aromatic compound metabolic process 5111
          nucleobase-containing compound metabolic process 4911
            nucleic acid metabolic process 4490
              DNA metabolic process 821
                DNA repair 447
                  DNA synthesis involved in DNA repair 33
                    DNA synthesis involved in UV-damage excision repair 3
                    DNA synthesis involved in double-strand break repair via homologous recombination 0
                    DNA synthesis involved in double-strand break repair via single-strand annealing 0
                    meiotic DNA repair synthesis + 4
                    translesion synthesis + 19
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.