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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA synthesis involved in DNA repair
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Accession:GO:0000731 term browser browse the term
Definition:Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
Synonyms:narrow_synonym: mitotic DNA repair synthesis
 broad_synonym: DNA repair synthesis
 related_synonym: DNA synthesis during DNA repair


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DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chrNW_004936659:840,602...843,078 JBrowse link
G Hrob homologous recombination factor with OB-fold ISO (PMID:31467087) UniProt PMID:31467087 NCBI chrNW_004936541:619,120...633,590 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:1730053)
(PMID:24191025), (PMID:3335506)
UniProtKB
UniProt
PMID:1730053, PMID:3335506, PMID:24191025 NCBI chrNW_004936889:231,373...250,985 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chrNW_004936660:2,575,255...2,622,867 JBrowse link
G Polh DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004936476:16,400,026...16,434,538 JBrowse link
G Sirt1 sirtuin 1 ISO (MGI:MGI:5297784|PMID:17612497) UniProtKB PMID:17612497 MGI:MGI:5297784 NCBI chrNW_004936521:10,296,097...10,316,673 JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004936792:862,659...1,005,065 JBrowse link
G Wrnip1 WRN helicase interacting protein 1 ISO (PMID:15670210) UniProtKB PMID:15670210 NCBI chrNW_004936633:3,853,201...3,873,983 JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:5562498|PMID:23993650) MGI PMID:23993650 MGI:MGI:5562498 NCBI chrNW_004936529:264,535...266,451 JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025) UniProt PMID:24191025 NCBI chrNW_004936889:231,373...250,985 JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 ISO (PMID:24191025) UniProt PMID:24191025 NCBI chrNW_004936538:4,504,039...4,512,785 JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polk DNA polymerase kappa ISO (PMID:28297716) UniProtKB PMID:28297716 NCBI chrNW_004936549:1,199,810...1,261,889 JBrowse link
G Primpol primase and DNA directed polymerase ISO (PMID:24682820), (PMID:25746449), (PMID:28534480) UniProt PMID:24682820, PMID:25746449, PMID:28534480 NCBI chrNW_004936554:4,536,246...4,571,000 JBrowse link
G Rev1 REV1 DNA directed polymerase ISO (MGI:MGI:2157239|PMID:11711549) MGI PMID:11711549 MGI:MGI:2157239 NCBI chrNW_004936661:1,322,907...1,397,990 JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 ISO (MGI:MGI:5314623|PMID:22011390) MGI PMID:22011390 MGI:MGI:5314623 NCBI chrNW_004936677:167,324...197,860 JBrowse link
G Sycp1 synaptonemal complex protein 1 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004936627:239,232...365,062 JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004936492:12,316,868...12,326,778 JBrowse link
G Tex12 testis expressed 12 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004936612:2,297,754...2,303,130 JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtl denticleless E3 ubiquitin protein ligase homolog ISO (PMID:20129063) UniProtKB PMID:20129063 NCBI chrNW_004936557:1,347,991...1,389,836 JBrowse link
G Faap20 FA core complex associated protein 20 ISO (PMID:22266823) UniProtKB PMID:22266823 NCBI chrNW_004936737:1,296,152...1,300,038 JBrowse link
G Parp10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:24695737) UniProt PMID:24695737 NCBI chrNW_004936470:8,179,416...8,194,041 JBrowse link
G Pclaf PCNA clamp associated factor ISO (PMID:23000965) UniProtKB PMID:23000965 NCBI chrNW_004936471:24,797,291...24,812,196 JBrowse link
G Pcna proliferating cell nuclear antigen ISO (PMID:20129063) UniProtKB PMID:20129063 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Poli DNA polymerase iota ISO (MGI:MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:MGI:3695544 NCBI chrNW_004936497:9,490,048...9,512,475 JBrowse link
G Poln DNA polymerase nu ISO (PMID:19908865)
(PMID:20102227)
UniProtKB PMID:19908865, PMID:20102227 NCBI chrNW_004936477:21,268,236...21,396,526 JBrowse link
G Primpol primase and DNA directed polymerase ISO (PMID:24240614), (PMID:24267451) UniProtKB PMID:24240614, PMID:24267451 NCBI chrNW_004936554:4,536,246...4,571,000 JBrowse link
G Sprtn SprT-like N-terminal domain ISO (PMID:22681887), (PMID:22902628)
(PMID:23042605), (PMID:23042607)
UniProtKB PMID:22681887, PMID:22902628, PMID:23042605, PMID:23042607 NCBI chrNW_004936484:19,391,685...19,402,938 JBrowse link
G Vcp valosin containing protein ISO (PMID:23042605) UniProtKB PMID:23042605 NCBI chrNW_004936524:3,085,959...3,102,461 JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chrNW_004936495:8,212,136...8,238,876 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12001
    metabolic process 7670
      cellular metabolic process 7071
        cellular macromolecule metabolic process 5524
          DNA metabolic process 661
            DNA repair 341
              DNA synthesis involved in DNA repair 28
                DNA synthesis involved in UV-damage excision repair 2
                DNA synthesis involved in double-strand break repair via homologous recombination 0
                DNA synthesis involved in double-strand break repair via single-strand annealing 0
                gene conversion at mating-type locus, DNA repair synthesis 0
                meiotic DNA repair synthesis + 4
                translesion synthesis + 15
Path 2
Term Annotations click to browse term
  biological_process 12001
    metabolic process 7670
      cellular metabolic process 7071
        cellular aromatic compound metabolic process 3755
          nucleobase-containing compound metabolic process 3585
            nucleic acid metabolic process 3298
              DNA metabolic process 661
                DNA repair 341
                  DNA synthesis involved in DNA repair 28
                    DNA synthesis involved in UV-damage excision repair 2
                    DNA synthesis involved in double-strand break repair via homologous recombination 0
                    DNA synthesis involved in double-strand break repair via single-strand annealing 0
                    gene conversion at mating-type locus, DNA repair synthesis 0
                    meiotic DNA repair synthesis + 4
                    translesion synthesis + 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.