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ONTOLOGY REPORT - ANNOTATIONS


Term:condensed chromosome, centromeric region
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Accession:GO:0000779 term browser browse the term
Definition:The region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.
Comment:Note that this term can be used in place of the obsolete cellular component term 'centromere ; GO:0005698'. Use with caution because this term refers to a specific region of the chromosome and not a protein complex.
Synonyms:exact_synonym: condensed chromosome, centric region
 related_synonym: condensed chromosome, centromere;   condensed chromosome, pericentric region


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condensed chromosome, centromeric region term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aurkb aurora kinase B JBrowse link 10 55,625,860 55,632,399 RGD:1624291
G Cbx3 chromobox 3 JBrowse link 4 81,243,809 81,257,898 RGD:1624291
G Cebpb CCAAT/enhancer binding protein beta JBrowse link 3 164,424,502 164,425,933 RGD:1624291
G Cenpe centromere protein E JBrowse link 2 240,395,974 240,454,785 RGD:1624291
G Ncapd2 non-SMC condensin I complex, subunit D2 JBrowse link 4 157,682,855 157,705,903 RGD:13792537
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:13792537
G Ncapg non-SMC condensin I complex, subunit G JBrowse link 14 69,898,268 69,927,885 RGD:1624291
G Sgo1 shugoshin 1 JBrowse link 9 4,420,158 4,435,939 RGD:1624291
G Sgo2 shugoshin 2 JBrowse link 9 64,898,380 64,923,023 RGD:1624291
condensed chromosome inner kinetochore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpa centromere protein A JBrowse link 6 27,072,259 27,080,863 RGD:1624291
G Orc2 origin recognition complex, subunit 2 JBrowse link 9 65,350,630 65,387,293 RGD:1624291
condensed chromosome kinetochore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahctf1 AT hook containing transcription factor 1 JBrowse link 13 98,023,528 98,079,138 RGD:1624291
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:1624291
RGD:1600115
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase JBrowse link 3 120,373,604 120,404,910 RGD:1624291
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B JBrowse link 3 110,367,949 110,420,471 RGD:1624291
G Cenpn centromere protein N JBrowse link 19 49,457,461 49,479,989 RGD:1600115
G Cenpu centromere protein U JBrowse link 16 48,898,032 48,921,248 RGD:1600115
G Cenpw centromere protein W JBrowse link 1 29,915,443 29,920,598 RGD:1600115
G Cfdp1 craniofacial development protein 1 JBrowse link 19 43,989,596 44,078,320 RGD:1600115
G Champ1 chromosome alignment maintaining phosphoprotein 1 JBrowse link 16 80,839,373 80,850,340 RGD:1624291
RGD:13792537
G Clasp2 cytoplasmic linker associated protein 2 JBrowse link 8 122,003,719 122,185,495 RGD:1600115
G Csnk1a1 casein kinase 1, alpha 1 JBrowse link 18 56,887,722 56,910,610 RGD:1600115
G Dsn1 DSN1 component of MIS12 kinetochore complex JBrowse link 3 153,101,020 153,115,326 RGD:1624291
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 JBrowse link 4 30,807,755 31,121,097 RGD:1600115
G Dync1li1 dynein cytoplasmic 1 light intermediate chain 1 JBrowse link 8 122,743,274 122,776,801 RGD:1600115
G Hjurp Holliday junction recognition protein JBrowse link 9 95,347,739 95,362,228 RGD:1624291
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
G Itgb3bp integrin subunit beta 3 binding protein JBrowse link 5 118,476,410 118,541,928 RGD:1600115
G Kif2b kinesin family member 2B JBrowse link 10 79,095,588 79,097,807 RGD:1600115
G Kif2c kinesin family member 2C JBrowse link 5 136,027,923 136,053,268 RGD:1600115
G Knl1 kinetochore scaffold 1 JBrowse link 3 110,847,304 110,909,807 RGD:13792537
G Knstrn kinetochore-localized astrin/SPAG5 binding protein JBrowse link 3 110,618,256 110,638,024 RGD:1600115
G LOC100911204 protein CASC5-like JBrowse link 3 112,531,429 112,560,698 RGD:1624291
RGD:13792537
G Meikin meiotic kinetochore factor JBrowse link 10 39,726,373 39,776,458 RGD:1624291
RGD:13792537
G Mis12 MIS12 kinetochore complex component JBrowse link 10 57,653,685 57,661,833 RGD:1624291
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:1624291
G Ndc80 NDC80 kinetochore complex component JBrowse link 9 119,837,857 119,871,435 RGD:1624291
G Nde1 nudE neurodevelopment protein 1 JBrowse link 10 860,513 904,624 RGD:1600115
G Ndel1 nudE neurodevelopment protein 1-like 1 JBrowse link 10 55,398,919 55,456,654 RGD:1600115
G Nsl1 NSL1 component of MIS12 kinetochore complex JBrowse link 13 109,669,646 109,697,849 RGD:1624291
G Nudcd2 NudC domain containing 2 JBrowse link 10 25,890,943 25,896,432 RGD:1600115
G Nup107 nucleoporin 107 JBrowse link 7 60,781,724 60,825,225 RGD:1600115
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:1624291
RGD:13792537
G Nup85 nucleoporin 85 JBrowse link 10 104,118,999 104,137,258 RGD:1600115
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 JBrowse link 15 47,211,682 47,270,343 RGD:1600115
G Pmf1 polyamine-modulated factor 1 JBrowse link 2 187,751,770 187,771,933 RGD:1624291
G Ppp1cc protein phosphatase 1 catalytic subunit gamma JBrowse link 12 39,864,302 39,882,030 RGD:1600115
G Rassf2 Ras association domain family member 2 JBrowse link 3 124,574,088 124,610,267 RGD:1600115
G Septin7 septin 7 JBrowse link 8 26,412,910 26,476,615 RGD:1600115
G Spc25 SPC25 component of NDC80 kinetochore complex JBrowse link 3 55,438,534 55,451,961 RGD:1624291
RGD:13792537
RGD:1600115
G Ss18l1 SS18L1 subunit of BAF chromatin remodeling complex JBrowse link 3 175,426,754 175,445,222 RGD:1600115
G Tex14 testis expressed 14, intercellular bridge forming factor JBrowse link 10 74,724,070 74,849,172 RGD:1600115
G Zw10 zw10 kinetochore protein JBrowse link 8 53,365,881 53,390,742 RGD:1600115
G Zwint ZW10 interacting kinetochore protein JBrowse link 20 17,075,781 17,091,715 RGD:1600115
condensed chromosome outer kinetochore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bod1 biorientation of chromosomes in cell division 1 JBrowse link 10 16,259,728 16,266,069 RGD:1624291
RGD:13792537
G Bod1l1 biorientation of chromosomes in cell division 1-like 1 JBrowse link 14 73,738,137 73,792,935 RGD:13792537
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B JBrowse link 3 110,367,949 110,420,471 RGD:1624291
G Cenpe centromere protein E JBrowse link 2 240,395,974 240,454,785 RGD:1624291
G Cenpf centromere protein F JBrowse link 13 108,132,499 108,178,609 RGD:1624291
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:1624291
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:1624291
G Ska1 spindle and kinetochore associated complex subunit 1 JBrowse link 18 70,174,316 70,184,368 RGD:1600115
RGD:13792537
RGD:1624291
G Ska2 spindle and kinetochore associated complex subunit 2 JBrowse link 10 74,413,989 74,431,922 RGD:1600115
RGD:13792537
RGD:1624291
G Ska3 spindle and kinetochore associated complex subunit 3 JBrowse link 15 38,077,903 38,097,100 RGD:1624291
RGD:13792537
RGD:1600115
G Spdl1 spindle apparatus coiled-coil protein 1 JBrowse link 10 19,628,070 19,652,914 RGD:1624291
RGD:13792537
RGD:1600115
condensed nuclear chromosome inner kinetochore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpk centromere protein K JBrowse link 2 34,312,766 34,373,945 RGD:13792537
G Dsn1 DSN1 component of MIS12 kinetochore complex JBrowse link 3 153,101,020 153,115,326 RGD:13792537
condensed nuclear chromosome kinetochore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase JBrowse link 3 120,373,604 120,404,910 RGD:13792537
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B JBrowse link 3 110,367,949 110,420,471 RGD:1624291
RGD:13792537
G Cenpa centromere protein A JBrowse link 6 27,072,259 27,080,863 RGD:1624291
G Cenpc centromere protein C JBrowse link 14 23,611,909 23,670,314 RGD:13792537
G Cenpe centromere protein E JBrowse link 2 240,395,974 240,454,785 RGD:1624291
G Cenpo centromere protein O JBrowse link 6 28,648,804 28,663,527 RGD:13792537
G Cenpt centromere protein T JBrowse link 19 37,813,284 37,819,782 RGD:13792537
G Mis18bp1 MIS18 binding protein 1 JBrowse link 6 86,879,106 86,925,209 RGD:13792537
G Ndc80 NDC80 kinetochore complex component JBrowse link 9 119,837,857 119,871,435 RGD:13792537
G Nuf2 NUF2 component of NDC80 kinetochore complex JBrowse link 13 87,818,456 87,847,223 RGD:13792537
G Peli1 pellino E3 ubiquitin protein ligase 1 JBrowse link 14 106,008,086 106,062,566 RGD:1624291
G Rec8 REC8 meiotic recombination protein JBrowse link 15 34,296,922 34,304,387 RGD:1624291
condensed nuclear chromosome outer kinetochore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase JBrowse link 3 120,373,604 120,404,910 RGD:1624291
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:1624291
G Ndc80 NDC80 kinetochore complex component JBrowse link 9 119,837,857 119,871,435 RGD:1624291
G Plk1 polo-like kinase 1 JBrowse link 1 192,115,990 192,125,969 RGD:1624291
RGD:1600115
condensed nuclear chromosome, centromeric region term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07027258.1 RGD:1600115
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1624291
RGD:1600115
G Aurka aurora kinase A JBrowse link 3 170,364,177 170,380,278 RGD:13792537
G Aurkb aurora kinase B JBrowse link 10 55,625,860 55,632,399 RGD:1624291
RGD:13792537
G Aurkc aurora kinase C JBrowse link 1 69,958,452 69,964,546 RGD:13792537
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase JBrowse link 3 120,373,604 120,404,910 RGD:1624291
G Cenpa centromere protein A JBrowse link 6 27,072,259 27,080,863 RGD:1624291
G Cenpb centromere protein B JBrowse link 3 123,720,888 123,723,520 RGD:1624291
G Cenpc centromere protein C JBrowse link 14 23,611,909 23,670,314 RGD:1624291
G Kmt5b lysine methyltransferase 5B JBrowse link 1 219,000,844 219,050,211 RGD:1624291
G Kmt5c lysine methyltransferase 5C JBrowse link 1 72,666,662 72,674,271 RGD:1624291
G Meikin meiotic kinetochore factor JBrowse link 10 39,726,373 39,776,458 RGD:1624291
RGD:13792537
G Plk1 polo-like kinase 1 JBrowse link 1 192,115,990 192,125,969 RGD:1624291
G Rec8 REC8 meiotic recombination protein JBrowse link 15 34,296,922 34,304,387 RGD:1624291
G Sgo1 shugoshin 1 JBrowse link 9 4,420,158 4,435,939 RGD:1624291
G Sgo2 shugoshin 2 JBrowse link 9 64,898,380 64,923,023 RGD:1624291
G Ss18l1 SS18L1 subunit of BAF chromatin remodeling complex JBrowse link 3 175,426,754 175,445,222 RGD:1624291
G Sycp2 synaptonemal complex protein 2 JBrowse link 3 173,884,559 173,948,304 RGD:13792537
G Sycp2l synaptonemal complex protein 2-like JBrowse link 17 21,430,470 21,486,091 RGD:1624291
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
MIS12/MIND type complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dsn1 DSN1 component of MIS12 kinetochore complex JBrowse link 3 153,101,020 153,115,326 RGD:1624291
G Mis12 MIS12 kinetochore complex component JBrowse link 10 57,653,685 57,661,833 RGD:1624291
RGD:1600115
G Nsl1 NSL1 component of MIS12 kinetochore complex JBrowse link 13 109,669,646 109,697,849 RGD:1624291
RGD:13792537
G Pmf1 polyamine-modulated factor 1 JBrowse link 2 187,751,770 187,771,933 RGD:1624291
Mis6-Sim4 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpo centromere protein O JBrowse link 6 28,648,804 28,663,527 RGD:13792537
nuclear MIS12/MIND complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dsn1 DSN1 component of MIS12 kinetochore complex JBrowse link 3 153,101,020 153,115,326 RGD:13792537
G Mis12 MIS12 kinetochore complex component JBrowse link 10 57,653,685 57,661,833 RGD:13792537
G Pmf1 polyamine-modulated factor 1 JBrowse link 2 187,751,770 187,771,933 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19951
    cellular anatomical entity 19598
      chromosomal region 290
        chromosome, centromeric region 186
          condensed chromosome, centromeric region 81
            condensed chromosome kinetochore + 64
            condensed nuclear chromosome, centromeric region + 33
Path 2
Term Annotations click to browse term
  cellular_component 19951
    cellular anatomical entity 19598
      organelle 12670
        non-membrane-bounded organelle 4661
          intracellular non-membrane-bounded organelle 4642
            chromosome 1109
              chromosomal region 290
                chromosome, centromeric region 186
                  condensed chromosome, centromeric region 81
                    condensed chromosome kinetochore + 64
                    condensed nuclear chromosome, centromeric region + 33
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.