Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:mitochondrial RNA metabolic process
go back to main search page
Accession:GO:0000959 term browser browse the term
Definition:The chemical reactions and pathways involving RNA transcribed from the mitochondrial genome and occurring in the mitochondrion.


show annotations for term's descendants       view all columns           Sort by:
 
mitochondrial RNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fastkd1 FAST kinase domains 1 JBrowse link 3 55,925,598 55,951,584 RGD:1624291
mitochondrial alanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:1624291
RGD:1600115
mitochondrial asparaginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) JBrowse link 13 78,857,638 78,885,464 RGD:1624291
RGD:1600115
mitochondrial glycyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:13792537
mitochondrial mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
RGD:1624291
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
RGD:13792537
G Supv3l1 Suv3 like RNA helicase JBrowse link 20 32,057,530 32,080,170 RGD:1600115
RGD:1624291
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tbrg4 transforming growth factor beta regulator 4 JBrowse link 14 86,876,800 86,885,603 RGD:1624291
RGD:1600115
mitochondrial mRNA surveillance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Supv3l1 Suv3 like RNA helicase JBrowse link 20 32,057,530 32,080,170 RGD:1600115
RGD:1624291
mitochondrial ncRNA surveillance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Supv3l1 Suv3 like RNA helicase JBrowse link 20 32,057,530 32,080,170 RGD:1600115
RGD:1624291
mitochondrial RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
RGD:13792537
G Supv3l1 Suv3 like RNA helicase JBrowse link 20 32,057,530 32,080,170 RGD:1600115
RGD:13792537
RGD:1624291
mitochondrial RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:1600115
mitochondrial RNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
RGD:13792537
mitochondrial RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fastkd5 FAST kinase domains 5 JBrowse link 3 123,154,263 123,170,615 RGD:1624291
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:13792537
mitochondrial RNA surveillance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Supv3l1 Suv3 like RNA helicase JBrowse link 20 32,057,530 32,080,170 RGD:1624291
RGD:1600115
mitochondrial seryl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars2 seryl-tRNA synthetase 2, mitochondrial JBrowse link 1 86,923,769 86,935,506 RGD:13792537
mitochondrial transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxo3 forkhead box O3 JBrowse link 20 46,428,078 46,519,156 RGD:1624291
G Mrpl12 mitochondrial ribosomal protein L12 JBrowse link 10 109,658,032 109,662,535 RGD:1624291
RGD:13792537
G Mterf4 mitochondrial transcription termination factor 4 JBrowse link 9 100,440,482 100,445,158 RGD:1624291
G Polrmt RNA polymerase mitochondrial JBrowse link 7 12,840,907 12,851,153 RGD:1624291
RGD:13792537
G Ppargc1b PPARG coactivator 1 beta JBrowse link 18 56,626,725 56,650,524 RGD:1624291
G Slc25a33 solute carrier family 25 member 33 JBrowse link 5 166,701,463 166,726,794 RGD:1624291
G Tefm transcription elongation factor, mitochondrial JBrowse link 10 67,476,006 67,478,830 RGD:1624291
RGD:1600115
G Tfam transcription factor A, mitochondrial JBrowse link 20 18,594,057 18,606,106 RGD:727414
RGD:1624291
RGD:1578536
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:1624291
RGD:13792537
G Twnk twinkle mtDNA helicase JBrowse link 1 264,756,060 264,762,892 RGD:1624291
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link 4 138,855,497 138,869,217 RGD:1624291
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elac2 elaC ribonuclease Z 2 JBrowse link 10 51,478,378 51,501,167 RGD:1600115
RGD:13792537
RGD:1624291
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Prorp protein only RNase P catalytic subunit JBrowse link 6 76,079,880 76,171,298 RGD:1624291
RGD:1600115
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:1600115
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:1624291
RGD:13792537
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1624291
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt10a tRNA methyltransferase 10A JBrowse link 2 243,422,811 243,437,533 RGD:13792537
G Trmt10b tRNA methyltransferase 10B JBrowse link 5 60,841,517 60,866,480 RGD:13792537
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:13792537
RGD:1600115
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
mitochondrial tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) JBrowse link 2 201,170,363 201,256,115 RGD:13792537
mitochondrial tyrosyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Yars2 tyrosyl-tRNA synthetase 2 JBrowse link 11 88,882,615 88,888,377 RGD:1624291
negative regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lrpprc leucine-rich pentatricopeptide repeat containing JBrowse link 6 7,984,043 8,066,874 RGD:1624291
G Slirp SRA stem-loop interacting RNA binding protein JBrowse link 6 111,476,768 111,486,039 RGD:1624291
RGD:13792537
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Grsf1 G-rich RNA sequence binding factor 1 JBrowse link 14 21,039,990 21,056,413 RGD:1624291
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
G Supv3l1 Suv3 like RNA helicase JBrowse link 20 32,057,530 32,080,170 RGD:1600115
RGD:1624291
positive regulation of mitochondrial transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 JBrowse link 20 13,665,046 13,666,845 RGD:1624291
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:1624291
G Sirt3 sirtuin 3 JBrowse link 1 213,613,502 213,636,061 RGD:1624291
regulation of mitochondrial transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC683897 similar to Protein C6orf203 JBrowse link 20 48,276,101 48,294,975 RGD:1624291
RGD:13792537
G Mettl4 methyltransferase like 4 JBrowse link 9 119,871,519 119,953,248 RGD:1624291
termination of mitochondrial transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mterf1 mitochondrial transcription termination factor 1 JBrowse link 4 27,365,310 27,372,374 RGD:1624291
RGD:13792537
RGD:1600115
G Mterf2 mitochondrial transcription termination factor 2 JBrowse link 7 24,638,208 24,649,599 RGD:13792537
transcription elongation from mitochondrial promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tefm transcription elongation factor, mitochondrial JBrowse link 10 67,476,006 67,478,830 RGD:1600115
transcription initiation from mitochondrial promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tfam transcription factor A, mitochondrial JBrowse link 20 18,594,057 18,606,106 RGD:1624291
RGD:1600115
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:1600115
RGD:1624291
tRNA aminoacylation for mitochondrial protein translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial JBrowse link 1 191,997,512 192,025,350 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      organic substance metabolic process 11359
        macromolecule metabolic process 9815
          nucleic acid metabolic process 4822
            RNA metabolic process 4322
              mitochondrial RNA metabolic process 43
                mitochondrial RNA catabolic process + 6
                mitochondrial RNA modification + 4
                mitochondrial RNA processing + 14
                mitochondrial transcription + 17
                tRNA aminoacylation for mitochondrial protein translation + 7
                termination of mitochondrial transcription 2
                transcription elongation from mitochondrial promoter 1
                transcription initiation from mitochondrial promoter 2
Path 2
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      cellular metabolic process 10782
        cellular aromatic compound metabolic process 5534
          nucleobase-containing compound metabolic process 5311
            nucleic acid metabolic process 4822
              RNA metabolic process 4322
                mitochondrial RNA metabolic process 43
                  mitochondrial RNA catabolic process + 6
                  mitochondrial RNA modification + 4
                  mitochondrial RNA processing + 14
                  mitochondrial transcription + 17
                  tRNA aminoacylation for mitochondrial protein translation + 7
                  termination of mitochondrial transcription 2
                  transcription elongation from mitochondrial promoter 1
                  transcription initiation from mitochondrial promoter 2
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.