ONTOLOGY REPORT - ANNOTATIONS


Term:formation of extrachromosomal circular DNA
go back to main search page
Accession:GO:0001325 term browser browse the term
Definition:Excision from the chromosome and circularization of a region of chromosomal DNA, generally, but not always, via homologous recombination between direct tandem repeats.
Synonyms:exact_synonym: assembly of extrachromosomal circular DNA


show annotations for term's descendants       view all columns           Sort by:
 
negative regulation of t-circle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link 3 176,818,012 176,856,531 RGD:1624291
RGD:13792537
G Terf2 telomeric repeat binding factor 2 JBrowse link 19 39,271,992 39,301,506 RGD:1624291
RGD:1600115
G Xrcc5 X-ray repair cross complementing 5 JBrowse link 9 79,659,275 79,748,050 RGD:1624291
RGD:1600115
positive regulation of t-circle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 1 80,256,973 80,268,198 RGD:1624291
RGD:1600115
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit JBrowse link 1 198,114,514 198,120,061 RGD:1624291
RGD:1600115
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link 10 11,787,756 11,808,326 RGD:1624291
t-circle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 1 80,256,973 80,268,198 RGD:1624291
RGD:1600115
G Nbn nibrin JBrowse link 5 29,622,347 29,656,877 RGD:1624291
RGD:1600115
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit JBrowse link 1 198,114,514 198,120,061 RGD:1624291
RGD:1600115
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link 10 11,787,756 11,808,326 RGD:1624291
RGD:1600115
G Xrcc3 X-ray repair cross complementing 3 JBrowse link 6 136,366,917 136,380,751 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17928
    cellular process 16079
      cellular component organization 6055
        cellular component assembly 2928
          formation of extrachromosomal circular DNA 8
            formation of extrachromosomal circular DNA involved in replicative cell aging + 0
            t-circle formation + 8
Path 2
Term Annotations click to browse term
  biological_process 17928
    metabolic process 10678
      organic substance metabolic process 10129
        organic cyclic compound metabolic process 5292
          nucleobase-containing compound metabolic process 4884
            nucleic acid metabolic process 4438
              DNA metabolic process 822
                formation of extrachromosomal circular DNA 8
                  formation of extrachromosomal circular DNA involved in replicative cell aging + 0
                  t-circle formation + 8
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.