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ONTOLOGY REPORT - ANNOTATIONS


Term:retinoid metabolic process
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Accession:GO:0001523 term browser browse the term
Definition:The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
Synonyms:exact_synonym: retinoid metabolism
 only_in_taxon: NCBITaxon:33208 ! Metazoa


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retinoid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) ISO MGI:MGI:2180100 (MGI:MGI:2180234|PMID:12027900) RGD PMID:12027900 MGI:MGI:2180234 NCBI chr 2:243,550,655...243,562,243
Ensembl chr 2:243,550,627...243,687,857
JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide ISO (PMID:15369820) RGD PMID:15369820 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899
JBrowse link
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide ISO MGI:MGI:2180101 (MGI:MGI:2180234|PMID:12027900) RGD PMID:12027900 MGI:MGI:2180234 NCBI chr 2:243,728,500...243,740,907
Ensembl chr 2:243,700,784...243,740,899
JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide TAS
ISO
(PMID:16787387), (PMID:9600267) RGD PMID:9600267, PMID:16787387, PMID:10829036 RGD:631904 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532
JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B ISS
ISO
GO_REF:0000024
(PMID:12732097)
UniProt
RGD
PMID:12732097 GO_REF:0000024 NCBI chr 4:61,706,866...61,720,959
Ensembl chr 4:61,706,864...61,720,956
JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 ISO (PMID:12732097) RGD PMID:12732097 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IDA PMID:7832787 UniProt PMID:7832787 RGD:11558002 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Bco1 beta-carotene oxygenase 1 IDA
ISO
PMID:12468597
(MGI:MGI:1931377|PMID:11092891)
(PMID:11401432)
RGD PMID:11092891, PMID:11401432, PMID:12468597 MGI:MGI:1931377, RGD:634627 NCBI chr19:49,637,059...49,673,577
Ensembl chr19:49,637,016...49,673,808
JBrowse link
G Ces1d carboxylesterase 1D TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr19:15,195,514...15,239,827
Ensembl chr19:15,033,108...15,239,821
JBrowse link
G Ces1e carboxylesterase 1E TAS PMID:12230550 UniProt PMID:12230550 RGD:724430
G Ces1f carboxylesterase 1F TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr19:15,081,117...15,126,629
Ensembl chr19:15,081,158...15,335,002
JBrowse link
G Ces2a carboxylesterase 2A TAS RGD PMID:12230550 RGD:724430 NCBI chr19:59,110...64,378
Ensembl chr19:59,197...64,303
JBrowse link
G Ces2c carboxylesterase 2C TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr 1:282,640,752...282,648,319
Ensembl chr 1:282,638,017...282,702,424
JBrowse link
G Ces2e carboxylesterase 2E TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr19:85,679...100,386
Ensembl chr19:85,606...100,424
JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IDA RGD PMID:9606960 RGD:1625388 NCBI chr 5:119,546,458...119,564,843
Ensembl chr 5:119,546,461...119,564,846
JBrowse link
G Dhrs3 dehydrogenase/reductase 3 ISO
IBA
MGI:MGI:5007106 (MGI:MGI:5528782|PMID:24005908)
PMID:21873635
RGD PMID:24005908, PMID:21873635 MGI:MGI:5528782, RGD:13792537 NCBI chr 5:162,809,090...162,843,385
Ensembl chr 5:162,808,646...162,843,383
JBrowse link
G LOC100365958 Rdh2 protein-like ISO (MGI:MGI:2153599|PMID:11562362) RGD PMID:11562362 MGI:MGI:2153599 NCBI chr 7:71,065,077...71,074,128
Ensembl chr 7:70,980,422...71,072,689
JBrowse link
G LOC108348093 acylcarnitine hydrolase-like TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr 1:282,671,390...282,691,028
Ensembl chr 1:282,638,017...282,702,424
JBrowse link
G Rarres2 retinoic acid receptor responder 2 ISO (PMID:9204961) RGD PMID:9204961 NCBI chr 4:78,205,809...78,208,956
Ensembl chr 4:78,205,812...78,208,767
JBrowse link
G Rbp3 retinol binding protein 3 IC RGD PMID:8282025 RGD:6893658 NCBI chr16:10,277,775...10,286,243
Ensembl chr16:10,277,775...10,286,243
JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO (PMID:12226107) RGD PMID:12226107 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rdh16 retinol dehydrogenase 16 ISO (MGI:MGI:1101408|PMID:9407098) RGD PMID:9407098 MGI:MGI:1101408 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689
JBrowse link
G Rdh5 retinol dehydrogenase 5 ISO (PMID:9931293)
(MGI:MGI:1350674|PMID:10588954)
RGD PMID:9931293, PMID:10588954 MGI:MGI:1350674 NCBI chr 7:3,335,681...3,342,573
Ensembl chr 7:3,335,742...3,342,491
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (PMID:25112876)
(PMID:16150724)
RGD PMID:16150724, PMID:25112876 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO
IEA
(MGI:MGI:2662611|PMID:11876656)
GO_REF:0000107
RGD
Ensembl
PMID:11876656 GO_REF:0000107, MGI:MGI:2662611 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO (MGI:MGI:2662611|PMID:11876656) RGD PMID:11876656 MGI:MGI:2662611 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 ISO (MGI:MGI:2662611|PMID:11876656) RGD PMID:11876656 MGI:MGI:2662611 NCBI chr 1:16,910,043...16,929,465
Ensembl chr 1:16,910,069...16,930,481
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IDA 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO
ISS
(PMID:11304534)
GO_REF:0000024
RGD
UniProt
PMID:11304534 GO_REF:0000024 NCBI chr 3:55,623,671...55,645,883
Ensembl chr 3:55,623,634...55,648,325
JBrowse link
G Rdh16 retinol dehydrogenase 16 ISO (MGI:MGI:2662611|PMID:11876656) RGD PMID:11876656 MGI:MGI:2662611 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689
JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IDA RGD PMID:17167544 RGD:2306320 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c3 aldo-keto reductase family 1, member C3 ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:69,761,126...69,778,021
Ensembl chr17:69,761,118...69,778,021
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
G Rdh16 retinol dehydrogenase 16 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689
JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgat1 diacylglycerol O-acyltransferase 1 IMP RGD PMID:18000880 RGD:10400849 NCBI chr 7:117,566,363...117,576,735
Ensembl chr 7:117,566,368...117,576,737
JBrowse link
G Isx intestine-specific homeobox ISO MGI:MGI:3775943 (MGI:MGI:3775349|PMID:18093975) RGD PMID:18093975 MGI:MGI:3775349 NCBI chr19:14,198,899...14,219,269
Ensembl chr19:14,198,899...14,218,531
JBrowse link
retinal metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657
JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:69,761,126...69,778,021
Ensembl chr17:69,761,118...69,778,021
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO (MGI:MGI:2655944|PMID:12610736) RGD PMID:12610736 MGI:MGI:2655944 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEA
ISO
GO_REF:0000107
(PMID:11585737)
Ensembl
RGD
PMID:11585737 GO_REF:0000107 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 ISO (PMID:11007799) RGD PMID:11007799 NCBI chr 1:16,910,043...16,929,465
Ensembl chr 1:16,910,069...16,930,481
JBrowse link
G Bco1 beta-carotene oxygenase 1 ISO
IBA
IEA
MGI:MGI:2177469 (MGI:MGI:5638293|PMID:25701869)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:25701869, PMID:21873635 GO_REF:0000107, MGI:MGI:5638293, RGD:13792537 NCBI chr19:49,637,059...49,673,577
Ensembl chr19:49,637,016...49,673,808
JBrowse link
G Bco2 beta-carotene oxygenase 2 ISO
IBA
MGI:MGI:1926923 (MGI:MGI:5638293|PMID:25701869)
PMID:21873635
RGD PMID:25701869, PMID:21873635 MGI:MGI:5638293, RGD:13792537 NCBI chr 8:54,965,577...54,990,604
Ensembl chr 8:54,965,583...54,998,864
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5572883|PMID:15258110)
(PMID:15258110)
Ensembl
UniProt
RGD
PMID:15258110 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5572883 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Dhrs13 dehydrogenase/reductase 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:65,329,407...65,334,533
Ensembl chr10:65,329,940...65,334,500
JBrowse link
G Dhrs4 dehydrogenase/reductase 4 ISO (MGI:MGI:2655870|PMID:12680773) RGD PMID:12680773 MGI:MGI:2655870 NCBI chr15:34,155,043...34,167,073
Ensembl chr15:34,155,504...34,167,072
JBrowse link
G Rbp4 retinol binding protein 4 ISO MGI:MGI:2445721 (MGI:MGI:2150869|PMID:11562477) RGD PMID:11562477 MGI:MGI:2150869 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (PMID:19458327) RGD PMID:19458327 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO (PMID:12807874) RGD PMID:12807874 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO
IBA
(PMID:18039331)
PMID:21873635
RGD PMID:18039331, PMID:21873635 RGD:13792537 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IMP
ISO
MGI:MGI:2181399 (MGI:MGI:2180434|PMID:11897783) RGD PMID:11897783, PMID:21785167 MGI:MGI:2180434, RGD:6893661 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 ISO
IBA
(PMID:18926804), (PMID:19102727)
PMID:21873635
RGD PMID:18926804, PMID:19102727, PMID:21873635 RGD:13792537 NCBI chr 5:16,904,926...16,930,111
Ensembl chr 5:16,904,926...16,930,075
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEP
ISO
ISS
IMP
(PMID:29240402)
GO_REF:0000024
RGD
UniProt
PMID:29240402, PMID:15950969, PMID:21138835 GO_REF:0000024, RGD:6771322, RGD:6771354 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEP
ISO
ISS
IEA
IMP
(MGI:MGI:1927016|PMID:11044606), (MGI:MGI:3042765|PMID:14623956), (MGI:MGI:3055622|PMID:11013254), (MGI:MGI:3692370|PMID:16241904)
GO_REF:0000024
(PMID:27759097)
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:11013254, PMID:11044606, PMID:14623956, PMID:16241904, PMID:27759097, PMID:15950969, PMID:21138835 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1927016, MGI:MGI:3042765, MGI:MGI:3055622, MGI:MGI:3692370, RGD:6771322, RGD:6771354 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 IEP RGD PMID:15950969 RGD:6771322 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 IEP
IDA
RGD PMID:15950969, PMID:21138835 RGD:6771322, RGD:6771354 NCBI chr 3:55,623,671...55,645,883
Ensembl chr 3:55,623,634...55,648,325
JBrowse link
G Rbp1 retinol binding protein 1 IEP RGD PMID:15950969 RGD:6771322 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:MGI:3709664 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crabp1 cellular retinoic acid binding protein 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:59,344,097...59,352,135
Ensembl chr 8:59,344,083...59,352,132
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO (PMID:10823918) RGD PMID:10823918 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 IMP
ISO
(PMID:10823918) RGD PMID:10823918, PMID:21138835 RGD:6771354 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615
JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 ISO (PMID:14532297) RGD PMID:14532297 NCBI chr 1:256,369,410...256,380,649
Ensembl chr 1:256,370,850...256,378,335
JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:17,382,749...17,387,909
Ensembl chr12:17,383,159...17,387,879
JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) ISO
IBA
MGI:MGI:2180099|MGI:MGI:2180100|MGI:MGI:97876 (MGI:MGI:1338643|PMID:10358022), (MGI:MGI:2675573|PMID:12851412), (MGI:MGI:3510590|PMID:15193143)
PMID:21873635
RGD PMID:10358022, PMID:12851412, PMID:15193143, PMID:21873635 MGI:MGI:1338643, MGI:MGI:2675573, MGI:MGI:3510590, RGD:13792537 NCBI chr 2:243,550,655...243,562,243
Ensembl chr 2:243,550,627...243,687,857
JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,656,568...243,687,857
Ensembl chr 2:243,550,627...243,687,857
JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,577,086...243,599,357
Ensembl chr 2:243,577,082...243,599,400
JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:MGI:2180102 (MGI:MGI:1338643|PMID:10358022), (MGI:MGI:1340177|PMID:10402668)
Ensembl
RGD
PMID:10358022, PMID:10402668, PMID:21873635 GO_REF:0000107, MGI:MGI:1338643, MGI:MGI:1340177, RGD:13792537 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO MGI:MGI:1861722|MGI:MGI:2667220|MGI:MGI:3609477 (MGI:MGI:1336449|PMID:10191271), (MGI:MGI:2664447|PMID:12808103), (MGI:MGI:2675573|PMID:12851412), (MGI:MGI:3608158|PMID:16207763) RGD PMID:10191271, PMID:12808103, PMID:12851412, PMID:16207763 MGI:MGI:1336449, MGI:MGI:2664447, MGI:MGI:2675573, MGI:MGI:3608158 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 TAS
ISO
IDA
MGI:MGI:1857891|MGI:MGI:2180721 (MGI:MGI:2681052|PMID:14623241), (MGI:MGI:3612223|PMID:16368932), (MGI:MGI:83148|PMID:8797830) RGD PMID:8797830, PMID:14623241, PMID:16368932, PMID:15205379, PMID:12547725 MGI:MGI:2681052, MGI:MGI:3612223, MGI:MGI:83148, RGD:1576366, RGD:1576367 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO (PMID:11585737)
MGI:MGI:1353450|MGI:MGI:3043947|MGI:MGI:3512079 (MGI:MGI:3608158|PMID:16207763), (MGI:MGI:3701419|PMID:17207476)
RGD PMID:11585737, PMID:16207763, PMID:17207476 MGI:MGI:3608158, MGI:MGI:3701419 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 ISO (PMID:11007799) RGD PMID:11007799 NCBI chr 1:16,910,043...16,929,465
Ensembl chr 1:16,910,069...16,930,481
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 NAS
ISO
(MGI:MGI:1313226|PMID:9826179) RGD PMID:9826179, PMID:7750498 MGI:MGI:1313226, RGD:61557 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO MGI:MGI:2183292 (MGI:MGI:1195386|PMID:9442090), (MGI:MGI:3522528|PMID:15531370), (MGI:MGI:894533|PMID:9250660)
(PMID:22020119), (PMID:9716180)
RGD PMID:9250660, PMID:9442090, PMID:9716180, PMID:15531370, PMID:22020119 MGI:MGI:1195386, MGI:MGI:3522528, MGI:MGI:894533 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 ISS
ISO
GO_REF:0000024
(PMID:22020119)
UniProt
RGD
PMID:22020119 GO_REF:0000024 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615
JBrowse link
G Cyp2c24 cytochrome P450, family 2, subfamily c, polypeptide 24 ISO (PMID:11093772) RGD PMID:11093772 NCBI chr 1:258,074,797...258,139,176
Ensembl chr 1:258,074,860...258,139,176
JBrowse link
G Cyp2c79 cytochrome P450, family 2, subfamily c, polypeptide 79 ISO (PMID:11093772) RGD PMID:11093772 NCBI chr 1:147,236,480...147,307,988 JBrowse link
G Cyp2s1 cytochrome P450, family 2, subfamily s, polypeptide 1 ISO (PMID:12711469) RGD PMID:12711469 NCBI chr 1:82,595,211...82,610,350
Ensembl chr 1:82,595,211...82,610,350
JBrowse link
G Cyp3a9 cytochrome P450, family 3, subfamily a, polypeptide 9 ISO (PMID:11093772) RGD PMID:11093772 NCBI chr12:19,074,288...19,114,491
Ensembl chr12:19,074,583...19,114,399
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 NAS RGD PMID:12390888 RGD:633755 NCBI chr 3:55,623,671...55,645,883
Ensembl chr 3:55,623,634...55,648,325
JBrowse link
G Rbp1 retinol binding protein 1 ISO MGI:MGI:2181412|MGI:MGI:87921 (MGI:MGI:3510590|PMID:15193143) RGD PMID:15193143 MGI:MGI:3510590 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link
G Rdh16 retinol dehydrogenase 16 IDA RGD PMID:7499345 RGD:1299624 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689
JBrowse link
G Scpep1 serine carboxypeptidase 1 IEP RGD PMID:11447226 RGD:70518 NCBI chr10:76,230,371...76,263,866
Ensembl chr10:76,230,373...76,263,866
JBrowse link
retinol metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) ISO
IBA
MGI:MGI:2180099|MGI:MGI:2180100|MGI:MGI:97876 (MGI:MGI:1338643|PMID:10358022), (MGI:MGI:2675573|PMID:12851412), (MGI:MGI:3510590|PMID:15193143)
PMID:21873635
RGD PMID:10358022, PMID:12851412, PMID:15193143, PMID:21873635 MGI:MGI:1338643, MGI:MGI:2675573, MGI:MGI:3510590, RGD:13792537 NCBI chr 2:243,550,655...243,562,243
Ensembl chr 2:243,550,627...243,687,857
JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide ISO
ISS
(PMID:16787387), (PMID:17279314)
GO_REF:0000024
RGD
UniProt
PMID:16787387, PMID:17279314 GO_REF:0000024 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899
JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,656,568...243,687,857
Ensembl chr 2:243,550,627...243,687,857
JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,577,086...243,599,357
Ensembl chr 2:243,577,082...243,599,400
JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide IDA
IBA
ISO
IEA
PMID:21873635
MGI:MGI:2180102 (MGI:MGI:1338643|PMID:10358022), (MGI:MGI:1340177|PMID:10402668)
GO_REF:0000107
RGD
Ensembl
PMID:10358022, PMID:10402668, PMID:10829036, PMID:21873635 GO_REF:0000107, MGI:MGI:1338643, MGI:MGI:1340177, RGD:631904, RGD:13792537 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532
JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:61,706,866...61,720,959
Ensembl chr 4:61,706,864...61,720,956
JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEA
ISO
GO_REF:0000041
GO_REF:0000107
MGI:MGI:2667220 (MGI:MGI:2675573|PMID:12851412)
UniProt
Ensembl
RGD
PMID:12851412 GO_REF:0000041, GO_REF:0000107, MGI:MGI:2675573 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:70,224,761...70,233,021
Ensembl chr  X:70,224,654...70,270,693
JBrowse link
G Bco1 beta-carotene oxygenase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr19:49,637,059...49,673,577
Ensembl chr19:49,637,016...49,673,808
JBrowse link
G Cel carboxyl ester lipase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO
IEA
ISS
(PMID:10681376)
GO_REF:0000041
GO_REF:0000024
RGD
UniProt
PMID:10681376 GO_REF:0000024, GO_REF:0000041 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 ISO
IEA
ISS
(PMID:10681376)
GO_REF:0000041
GO_REF:0000024
RGD
UniProt
PMID:10681376 GO_REF:0000024, GO_REF:0000041 NCBI chr 8:62,451,360...62,458,244
Ensembl chr 8:62,451,329...62,458,301
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEA
ISS
ISO
GO_REF:0000002
GO_REF:0000041
GO_REF:0000024
(PMID:10681376), (PMID:15258110)
(MGI:MGI:5572883|PMID:15258110)
GO_REF:0000107
InterPro
UniProt
RGD
Ensembl
PMID:10681376, PMID:15258110 GO_REF:0000002, GO_REF:0000024, GO_REF:0000041, GO_REF:0000107, MGI:MGI:5572883 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 ISO (PMID:10681376) RGD PMID:10681376 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436
JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:117,566,363...117,576,735
Ensembl chr 7:117,566,368...117,576,737
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:164,113,459...164,143,818
Ensembl chr 1:164,113,459...164,143,818
JBrowse link
G Dhrs13 dehydrogenase/reductase 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:65,329,407...65,334,533
Ensembl chr10:65,329,940...65,334,500
JBrowse link
G Dhrs3 dehydrogenase/reductase 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:162,809,090...162,843,385
Ensembl chr 5:162,808,646...162,843,383
JBrowse link
G Lipe lipase E, hormone sensitive type IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:82,248,031...82,266,727
Ensembl chr 1:82,248,046...82,266,727
JBrowse link
G LOC100911615 patatin-like phospholipase domain-containing protein 2-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:213,997,721...214,002,811
Ensembl chr 1:213,997,709...214,002,815
Ensembl chr 1:213,997,709...214,002,815
JBrowse link
G Lrat lecithin retinol acyltransferase IDA
ISO
IEA
MGI:MGI:3038935|MGI:MGI:97879 (MGI:MGI:3775853|PMID:18093970), (MGI:MGI:6414681|PMID:28758396)
GO_REF:0000002
(PMID:10819989)
GO_REF:0000041
RGD
InterPro
UniProt
PMID:10819989, PMID:18093970, PMID:28758396, PMID:2253789, PMID:14642897, PMID:9244401, PMID:8460936 GO_REF:0000002, GO_REF:0000041, MGI:MGI:3775853, MGI:MGI:6414681, RGD:1599829, RGD:6484737, RGD:1599832, RGD:1599831 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300
JBrowse link
G Plb1 phospholipase B1 IDA RGD PMID:8117729 RGD:6903951 NCBI chr 6:25,375,699...25,507,108
Ensembl chr 6:25,397,537...25,507,073
JBrowse link
G Pnpla2 patatin-like phospholipase domain containing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:214,434,638...214,439,720
Ensembl chr 1:214,434,626...214,439,720
JBrowse link
G Pnpla4 patatin like phospholipase domain containing 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:45,519,406...45,522,988
Ensembl chr  X:45,519,228...45,522,665
JBrowse link
G Rbp1 retinol binding protein 1 IDA
ISO
MGI:MGI:2181412|MGI:MGI:87921 (MGI:MGI:3510590|PMID:15193143), (MGI:MGI:3575475|PMID:15765518) RGD PMID:15193143, PMID:15765518, PMID:14642897 MGI:MGI:3510590, MGI:MGI:3575475, RGD:6484737 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link
G Rbp2 retinol binding protein 2 TAS RGD PMID:3029082 RGD:729693 NCBI chr 8:106,479,253...106,527,726
Ensembl chr 8:106,503,504...106,527,711
JBrowse link
G Rbp4 retinol binding protein 4 ISO MGI:MGI:1891259 (MGI:MGI:3775853|PMID:18093970)
(PMID:10232633)
RGD PMID:10232633, PMID:18093970 MGI:MGI:3775853 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Rdh10 retinol dehydrogenase 10 IEA
ISO
GO_REF:0000041
(PMID:19458327)
UniProt
RGD
PMID:19458327 GO_REF:0000041 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO (MGI:MGI:6189614|PMID:29567832) RGD PMID:29567832 MGI:MGI:6189614 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO (PMID:12226107)
(MGI:MGI:5442470|PMID:22621924)
RGD PMID:12226107, PMID:22621924 MGI:MGI:5442470 NCBI chr 6:102,392,828...102,405,750
Ensembl chr 6:102,392,828...102,405,750
JBrowse link
G Rdh13 retinol dehydrogenase 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350
JBrowse link
G Rdh14 retinol dehydrogenase 14 ISO (MGI:MGI:5618338|PMID:25533474), (MGI:MGI:6271140|PMID:12226107) RGD PMID:12226107, PMID:25533474 MGI:MGI:5618338, MGI:MGI:6271140 NCBI chr 6:36,106,926...36,112,069
Ensembl chr 6:36,107,147...36,112,064
JBrowse link
G Rdh16 retinol dehydrogenase 16 IDA
IEA
GO_REF:0000041 UniProt PMID:7499345 GO_REF:0000041, RGD:1299624 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689
JBrowse link
G Rdh7 retinol dehydrogenase 7 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:71,125,358...71,164,014 JBrowse link
G Rdh8 retinol dehydrogenase 8 ISO (MGI:MGI:3584232|PMID:15755727) RGD PMID:15755727 MGI:MGI:3584232 NCBI chr 8:21,835,065...21,842,374
Ensembl chr 8:21,835,103...21,842,374
JBrowse link
G Retsat retinol saturase ISO
IBA
ISS
IEA
(MGI:MGI:3522397|PMID:15358783)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15358783, PMID:21873635, PMID:15358783 GO_REF:0000107, MGI:MGI:3522397, RGD:13792537, RGD:8553455 NCBI chr 4:100,465,365...100,474,128
Ensembl chr 4:100,465,170...100,474,301
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:3603006 RGD:9585656 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 ISO
IBA
(PMID:18926804), (PMID:19102727)
PMID:21873635
RGD PMID:18926804, PMID:19102727, PMID:21873635 RGD:13792537 NCBI chr 5:16,904,926...16,930,111
Ensembl chr 5:16,904,926...16,930,075
JBrowse link
G Ttr transthyretin IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:15,532,963...15,542,180
Ensembl chr18:15,532,963...15,540,177
JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrat lecithin retinol acyltransferase IDA
ISO
(MGI:MGI:1928450|PMID:11108736), (MGI:MGI:6414681|PMID:28758396) RGD PMID:11108736, PMID:28758396, PMID:2253789, PMID:9244401, PMID:8460936 MGI:MGI:1928450, MGI:MGI:6414681, RGD:1599829, RGD:1599832, RGD:1599831 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta IMP RGD PMID:12576510 RGD:1625187 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333
JBrowse link
G Rbp1 retinol binding protein 1 ISO
ISS
(PMID:15632377)
GO_REF:0000024
RGD
UniProt
PMID:15632377 GO_REF:0000024 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      cellular metabolic process 11085
        cellular lipid metabolic process 1023
          isoprenoid metabolic process 117
            terpenoid metabolic process 92
              diterpenoid metabolic process 82
                retinoid metabolic process 73
                  retinal metabolic process 16
                  retinoic acid metabolic process + 25
                  retinol metabolic process 42
                  vitamin A metabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      primary metabolic process 10920
        lipid metabolic process 1374
          cellular lipid metabolic process 1023
            isoprenoid metabolic process 117
              terpenoid metabolic process 92
                diterpenoid metabolic process 82
                  retinoid metabolic process 73
                    retinal metabolic process 16
                    retinoic acid metabolic process + 25
                    retinol metabolic process 42
                    vitamin A metabolic process + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.