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ONTOLOGY REPORT - ANNOTATIONS


Term:branching involved in blood vessel morphogenesis
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Accession:GO:0001569 term browser browse the term
Definition:The process of coordinated growth and sprouting of blood vessels giving rise to the organized vascular system.
Synonyms:broad_synonym: patterning of blood vessels


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branching involved in blood vessel morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO
IEA
MGI:MGI:2386570|MGI:MGI:2651395 (MGI:MGI:3703113|PMID:17078885)
GO_REF:0000107
RGD
Ensembl
PMID:17078885 GO_REF:0000107, MGI:MGI:3703113 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Ahr aryl hydrocarbon receptor ISO (MGI:MGI:1889403|PMID:10973493) RGD PMID:10973493 MGI:MGI:1889403 NCBI chr 6:54,963,990...55,001,806
Ensembl chr 6:54,963,990...55,001,464
JBrowse link
G Col4a1 collagen type IV alpha 1 chain ISO (PMID:20818663) RGD PMID:20818663 NCBI chr16:83,522,162...83,632,153
Ensembl chr16:83,522,162...83,632,153
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:MGI:1858008|MGI:MGI:2148567 (MGI:MGI:2675534|PMID:12975353), (MGI:MGI:3833040|PMID:19154719)
Ensembl
RGD
PMID:12975353, PMID:19154719 GO_REF:0000107, MGI:MGI:2675534, MGI:MGI:3833040 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 ISO MGI:MGI:1934384 (MGI:MGI:3578491|PMID:15626744) RGD PMID:15626744 MGI:MGI:3578491 NCBI chr 4:149,261,044...149,273,891
Ensembl chr 4:149,261,044...149,273,891
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO MGI:MGI:1934442 (MGI:MGI:3578491|PMID:15626744) RGD PMID:15626744 MGI:MGI:3578491 NCBI chr13:45,314,952...45,318,856
Ensembl chr13:45,314,933...45,318,878
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO (MGI:MGI:3056036|PMID:15466159) RGD PMID:15466159 MGI:MGI:3056036 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Edn1 endothelin 1 ISO MGI:MGI:1857637 (MGI:MGI:74210|PMID:7615798) RGD PMID:7615798 MGI:MGI:74210 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Ednra endothelin receptor type A ISO
IEA
MGI:MGI:1347481 (MGI:MGI:3606840|PMID:15664398)
GO_REF:0000107
RGD
Ensembl
PMID:15664398 GO_REF:0000107, MGI:MGI:3606840 NCBI chr19:33,928,356...33,991,703
Ensembl chr19:33,928,356...33,991,703
JBrowse link
G Eng endoglin ISO (MGI:MGI:1337912|PMID:10348742) RGD PMID:10348742 MGI:MGI:1337912 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:95668 (MGI:MGI:3588904|PMID:15996652) RGD PMID:15996652 MGI:MGI:3588904 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 ISO MGI:MGI:1857717 (MGI:MGI:3045573|PMID:14982871) RGD PMID:14982871 MGI:MGI:3045573 NCBI chr12:9,033,993...9,205,886
Ensembl chr12:9,034,308...9,205,905
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:MGI:105923 (MGI:MGI:3606840|PMID:15664398) RGD PMID:15664398 MGI:MGI:3606840 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Gbx2 gastrulation brain homeobox 2 ISO MGI:MGI:1857634|MGI:MGI:99604 (MGI:MGI:3588904|PMID:15996652) RGD PMID:15996652 MGI:MGI:3588904 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Gdf2 growth differentiation factor 2 ISO (MGI:MGI:4830635|PMID:20406889)
(PMID:20406889)
RGD PMID:20406889 MGI:MGI:4830635 NCBI chr16:10,267,510...10,293,545
Ensembl chr16:10,267,482...10,273,239
JBrowse link
G Gna13 G protein subunit alpha 13 ISO MGI:MGI:2450311|MGI:MGI:3583876 (MGI:MGI:3583513|PMID:15919816) RGD PMID:15919816 MGI:MGI:3583513 NCBI chr10:97,647,196...97,680,030
Ensembl chr10:97,647,111...97,684,730
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3574706|PMID:15689378) RGD PMID:15689378 MGI:MGI:3574706 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Kdr kinase insert domain receptor ISO
IEA
(PMID:23688497)
GO_REF:0000107
RGD
Ensembl
PMID:23688497 GO_REF:0000107 NCBI chr14:34,727,677...34,787,127
Ensembl chr14:34,727,623...34,787,183
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO
IEA
MGI:MGI:1926601 (MGI:MGI:3833040|PMID:19154719)
GO_REF:0000107
RGD
Ensembl
PMID:19154719 GO_REF:0000107, MGI:MGI:3833040 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 ISO MGI:MGI:1920431 (MGI:MGI:2136698|PMID:11439183) RGD PMID:11439183 MGI:MGI:2136698 NCBI chr19:38,039,542...38,114,003
Ensembl chr19:38,039,564...38,114,003
JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 ISO MGI:MGI:103296 (MGI:MGI:2136698|PMID:11439183) RGD PMID:11439183 MGI:MGI:2136698 NCBI chr15:34,493,163...34,502,238
Ensembl chr15:34,493,138...34,504,326
JBrowse link
G Notch4 notch receptor 4 ISO (MGI:MGI:1934537|PMID:11344305) RGD PMID:11344305 MGI:MGI:1934537 NCBI chr20:4,329,794...4,353,868
Ensembl chr20:4,329,811...4,353,785
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein ISO
IBA
MGI:MGI:3833551 (MGI:MGI:3833040|PMID:19154719)
PMID:21873635
RGD PMID:19154719, PMID:21873635 MGI:MGI:3833040, RGD:13792537 NCBI chr 3:2,396,143...2,398,697
Ensembl chr 3:2,396,143...2,398,689
JBrowse link
G Nrp1 neuropilin 1 ISO MGI:MGI:3512099 (MGI:MGI:3710026|PMID:17428830), (MGI:MGI:5288256|PMID:21852397), (MGI:MGI:5484470|PMID:23315162), (MGI:MGI:5562961|PMID:24401374) RGD PMID:17428830, PMID:21852397, PMID:23315162, PMID:24401374 MGI:MGI:3710026, MGI:MGI:5288256, MGI:MGI:5484470, MGI:MGI:5562961 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:MGI:2445428 (MGI:MGI:2389284|PMID:12397115) RGD PMID:12397115 MGI:MGI:2389284 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Plxnd1 plexin D1 ISO MGI:MGI:3050678|MGI:MGI:5544786 (MGI:MGI:3050159|PMID:15239958), (MGI:MGI:5509072|PMID:23918385) RGD PMID:15239958, PMID:23918385 MGI:MGI:3050159, MGI:MGI:5509072 NCBI chr 4:147,854,309...147,894,170
Ensembl chr 4:147,854,309...147,893,992
JBrowse link
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha ISO MGI:MGI:3043986 (MGI:MGI:2136698|PMID:11439183) RGD PMID:11439183 MGI:MGI:2136698 NCBI chr14:100,311,224...100,360,879
Ensembl chr14:100,311,173...100,360,879
JBrowse link
G Rbm15 RNA binding motif protein 15 ISO MGI:MGI:3706995 (MGI:MGI:3833189|PMID:18981216) RGD PMID:18981216 MGI:MGI:3833189 NCBI chr 2:210,079,678...210,090,200
Ensembl chr 2:210,081,770...210,088,949
JBrowse link
G Sema3e semaphorin 3E ISO (MGI:MGI:3526793|PMID:15550623) RGD PMID:15550623 MGI:MGI:3526793 NCBI chr 4:17,314,745...17,594,659
Ensembl chr 4:17,272,511...17,594,598
JBrowse link
G Sema5a semaphorin 5A ISO MGI:MGI:3577050 (MGI:MGI:3575993|PMID:15743826) RGD PMID:15743826 MGI:MGI:3575993 NCBI chr 2:85,377,318...85,808,970
Ensembl chr 2:85,377,318...85,808,970
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO (MGI:MGI:4835126|PMID:19458075) RGD PMID:19458075 MGI:MGI:4835126 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Shh sonic hedgehog signaling molecule ISO
ISS
IEA
MGI:MGI:1857796 (MGI:MGI:3583396|PMID:15936751)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:15936751 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3583396 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Srf serum response factor ISO (MGI:MGI:3811944|PMID:18804439) RGD PMID:18804439 MGI:MGI:3811944 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Stk4 serine/threonine kinase 4 ISO MGI:MGI:1928487 (MGI:MGI:4412133|PMID:19786569) RGD PMID:19786569 MGI:MGI:4412133 NCBI chr 3:160,467,552...160,546,540
Ensembl chr 3:160,467,552...160,546,540
JBrowse link
G Tbx20 T-box transcription factor 20 ISO MGI:MGI:3579836 (MGI:MGI:3578574|PMID:15843414) RGD PMID:15843414 MGI:MGI:3578574 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO MGI:MGI:2384513|MGI:MGI:2386570 (MGI:MGI:3703113|PMID:17078885) RGD PMID:17078885 MGI:MGI:3703113 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931047 (MGI:MGI:3710026|PMID:17428830)
(PMID:23083510), (PMID:23688497)
RGD PMID:17428830, PMID:23083510, PMID:23688497 MGI:MGI:3710026 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
positive regulation blood vessel branching term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO (MGI:MGI:5588737|PMID:24863063) RGD PMID:24863063 MGI:MGI:5588737 NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388
JBrowse link
G Mdk midkine ISS
ISO
GO_REF:0000024
(PMID:19060126)
UniProt
RGD
PMID:19060126 GO_REF:0000024 NCBI chr 3:80,841,003...80,843,895
Ensembl chr 3:80,841,005...80,842,916
JBrowse link
G Sirt6 sirtuin 6 ISO (PMID:23201774) RGD PMID:23201774 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
regulation of blood vessel branching term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fkbpl FKBP prolyl isomerase like ISO MGI:MGI:4431442|MGI:MGI:5558157 (MGI:MGI:5699248|PMID:25767277) RGD PMID:25767277 MGI:MGI:5699248 NCBI chr20:4,411,890...4,413,360
Ensembl chr20:4,411,876...4,413,366
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure formation involved in morphogenesis 1210
        angiogenesis 525
          branching involved in blood vessel morphogenesis 41
            negative regulation of vessel branching 0
            positive regulation blood vessel branching 3
            regulation of blood vessel branching + 4
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            circulatory system development 1224
              vasculature development 772
                blood vessel development 735
                  blood vessel morphogenesis 635
                    angiogenesis 525
                      branching involved in blood vessel morphogenesis 41
                        negative regulation of vessel branching 0
                        positive regulation blood vessel branching 3
                        regulation of blood vessel branching + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.