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ONTOLOGY REPORT - ANNOTATIONS


Term:ureteric bud development
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Accession:GO:0001657 term browser browse the term
Definition:The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure.


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ureteric bud development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arg2 arginase 2 JBrowse link NW_004955466 2,549,557 2,577,060 RGD:9068941
G Bdnf brain derived neurotrophic factor JBrowse link NW_004955476 6,773,244 6,822,201 RGD:9068941
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
G Bmp7 bone morphogenetic protein 7 JBrowse link NW_004955445 2,154,057 2,235,594 RGD:9068941
G Cat catalase JBrowse link NW_004955422 11,783,973 11,826,970 RGD:9068941
G Cer1 cerberus 1, DAN family BMP antagonist JBrowse link NW_004955434 17,738,281 17,740,823 RGD:9068941
G Crlf1 cytokine receptor like factor 1 JBrowse link NW_004955524 2,998,258 3,003,553 RGD:9068941
G Epcam epithelial cell adhesion molecule JBrowse link NW_004955441 14,155,084 14,167,584 RGD:9068941
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link NW_004955463 14,013,247 14,064,354 RGD:9068941
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link NW_004955551 2,321,190 2,427,000 RGD:9068941
G Gdf11 growth differentiation factor 11 JBrowse link NW_004955458 3,388,402 3,398,040 RGD:9068941
G Lhx1 LIM homeobox 1 JBrowse link NW_004955451 1,037,936 1,048,501 RGD:9068941
G Npnt nephronectin JBrowse link NW_004955496 3,321,310 3,388,625 RGD:9068941
G Osr1 odd-skipped related transcription factor 1 JBrowse link NW_004955469 1,954,470 1,961,344 RGD:9068941
G Rara retinoic acid receptor alpha JBrowse link NW_004955451 14,876,663 14,917,134 RGD:9068941
G Rarb retinoic acid receptor beta JBrowse link NW_004955430 17,067,536 17,457,558 RGD:9068941
G Ret ret proto-oncogene JBrowse link NW_004955546 1,221,995 1,252,147 RGD:9068941
G Robo2 roundabout guidance receptor 2 JBrowse link NW_004955407 14,301,689 15,549,561 RGD:9068941
G Sall1 spalt like transcription factor 1 JBrowse link NW_004955433 9,146,074 9,161,171 RGD:9068941
G Sdc1 syndecan 1 JBrowse link NW_004955469 2,762,696 2,773,697 RGD:9068941
G Sdc4 syndecan 4 JBrowse link NW_004955445 11,990,916 12,009,178 RGD:9068941
G Sfrp1 secreted frizzled related protein 1 JBrowse link NW_004955536 1,663,721 1,702,678 RGD:9068941
G Sim1 SIM bHLH transcription factor 1 JBrowse link NW_004955411 26,173,009 26,256,545 RGD:9068941
G Six1 SIX homeobox 1 JBrowse link NW_004955466 8,961,597 8,966,069 RGD:9068941
G Slit2 slit guidance ligand 2 JBrowse link NW_004955480 3,982,977 4,314,160 RGD:9068941
G Smad1 SMAD family member 1 JBrowse link NW_004955428 1,357,398 1,429,521 RGD:9068941
G Smad2 SMAD family member 2 JBrowse link NW_004955402 33,131,760 33,217,144 RGD:9068941
G Smad3 SMAD family member 3 JBrowse link NW_004955450 8,747,651 8,842,003 RGD:9068941
G Smad5 SMAD family member 5 JBrowse link NW_004955408 31,183,727 31,228,355 RGD:9068941
G Smad6 SMAD family member 6 JBrowse link NW_004955450 9,005,332 9,070,790 RGD:9068941
G Smad7 SMAD family member 7 JBrowse link NW_004955402 34,028,184 34,058,949 RGD:9068941
G Spry1 sprouty RTK signaling antagonist 1 JBrowse link NW_004955428 17,451,703 17,455,695 RGD:9068941
G Tcf21 transcription factor 21 JBrowse link NW_004955439 2,617,562 2,620,613 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004955555 274,405 288,441 RGD:9068941
G Wt1 WT1 transcription factor JBrowse link NW_004955476 10,464,688 10,504,473 RGD:9068941
branch elongation involved in ureteric bud branching term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf1 fibroblast growth factor 1 JBrowse link NW_004955415 11,151,330 11,245,554 RGD:9068941
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 JBrowse link NW_004955504 3,167,142 3,320,632 RGD:9068941
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004955402 46,911,125 47,084,214 RGD:9068941
G Bmp2 bone morphogenetic protein 2 JBrowse link NW_004955415 17,048,374 17,058,172 RGD:9068941
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link NW_004955475 11,722,514 11,725,067 RGD:9068941
G Ctnnb1 catenin beta 1 JBrowse link NW_004955420 29,030,716 29,047,447 RGD:9068941
G Dchs1 dachsous cadherin-related 1 JBrowse link NW_004955414 22,331,590 22,365,761 RGD:9068941
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link NW_004955420 13,068,289 13,273,805 RGD:9068941
G Eya1 EYA transcriptional coactivator and phosphatase 1 JBrowse link NW_004955444 8,336,071 8,655,041 RGD:9068941
G Fat4 FAT atypical cadherin 4 JBrowse link NW_004955428 15,621,333 15,812,167 RGD:9068941
G Fgf2 fibroblast growth factor 2 JBrowse link NW_004955428 17,840,554 17,894,779 RGD:9068941
G Fgf8 fibroblast growth factor 8 JBrowse link NW_004955485 8,517,412 8,521,732 RGD:9068941
G Gdnf glial cell derived neurotrophic factor JBrowse link NW_004955426 22,386,613 22,412,324 RGD:9068941
G Gli3 GLI family zinc finger 3 JBrowse link NW_004955460 1,528,457 1,805,584 RGD:9068941
G Gpc3 glypican 3 JBrowse link NW_004955473 969,627 1,431,706 RGD:9068941
G Greb1l GREB1 like retinoic acid receptor coactivator JBrowse link NW_004955402 9,865,934 10,204,990 RGD:9068941
G Gzf1 GDNF inducible zinc finger protein 1 JBrowse link NW_004955415 30,381,153 30,391,239 RGD:9068941
G Hoxa11 homeobox A11 JBrowse link NW_004955410 28,875,780 28,879,643 RGD:9068941
G Hoxd11 homeobox D11 JBrowse link NW_004955403 20,541,870 20,556,574 RGD:9068941
G Ilk integrin linked kinase JBrowse link NW_004955414 22,316,243 22,322,979 RGD:9068941
G Lama5 laminin subunit alpha 5 JBrowse link NW_004955528 1,713,110 1,753,374 RGD:9068941
G Lhx1 LIM homeobox 1 JBrowse link NW_004955451 1,037,936 1,048,501 RGD:9068941
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link NW_004955461 2,714,022 2,718,872 RGD:9068941
G Npnt nephronectin JBrowse link NW_004955496 3,321,310 3,388,625 RGD:9068941
G Pax2 paired box 2 JBrowse link NW_004955485 9,351,913 9,430,607 RGD:9068941
G Pax8 paired box 8 JBrowse link NW_004955470 1,016,226 1,072,643 RGD:9068941
G Pbx1 PBX homeobox 1 JBrowse link NW_004955462 11,777,168 12,083,068 RGD:9068941
G Pgf placental growth factor JBrowse link NW_004955523 616,196 627,055 RGD:9068941
G Pkd2 polycystin 2, transient receptor potential cation channel JBrowse link NW_004955474 1,831,221 1,868,170 RGD:9068941
G Ptch1 patched 1 JBrowse link NW_004955422 22,362,330 22,418,062 RGD:9068941
G Sall1 spalt like transcription factor 1 JBrowse link NW_004955433 9,146,074 9,161,171 RGD:9068941
G Shh sonic hedgehog signaling molecule JBrowse link NW_004955491 8,647,133 8,657,381 RGD:9068941
G Six1 SIX homeobox 1 JBrowse link NW_004955466 8,961,597 8,966,069 RGD:9068941
G Smad4 SMAD family member 4 JBrowse link NW_004955402 35,956,080 36,001,746 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004955478 941,684 945,563 RGD:9068941
G Tcf21 transcription factor 21 JBrowse link NW_004955439 2,617,562 2,620,613 RGD:9068941
G Wnt1 Wnt family member 1 JBrowse link NW_004955500 7,797,063 7,811,142 RGD:9068941
G Wnt4 Wnt family member 4 JBrowse link NW_004955452 2,319,446 2,344,740 RGD:9068941
G Wnt6 Wnt family member 6 JBrowse link NW_004955453 14,547,427 14,560,001 RGD:9068941
G Wnt9b Wnt family member 9B JBrowse link NW_004955478 10,816,405 10,841,416 RGD:9068941
G Wt1 WT1 transcription factor JBrowse link NW_004955476 10,464,688 10,504,473 RGD:9068941
dichotomous subdivision of terminal units involved in ureteric bud branching term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxd1 forkhead box D1 JBrowse link NW_004955425 27,158,601 27,159,447 RGD:9068941
mesenchymal cell proliferation involved in ureteric bud development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp2 bone morphogenetic protein 2 JBrowse link NW_004955415 17,048,374 17,058,172 RGD:9068941
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
G Gpc3 glypican 3 JBrowse link NW_004955473 969,627 1,431,706 RGD:9068941
metanephric part of ureteric bud development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Calb1 calbindin 1 JBrowse link NW_004955417 6,944,300 6,969,341 RGD:9068941
G Foxj1 forkhead box J1 JBrowse link NW_004955506 6,127,551 6,132,302 RGD:9068941
G Lhx1 LIM homeobox 1 JBrowse link NW_004955451 1,037,936 1,048,501 RGD:9068941
G Pkd2 polycystin 2, transient receptor potential cation channel JBrowse link NW_004955474 1,831,221 1,868,170 RGD:9068941
negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
G Tacstd2 tumor associated calcium signal transducer 2 JBrowse link NW_004955464 1,282,989 1,284,785 RGD:9068941
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004955421 24,448,446 24,477,885 RGD:9068941
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004955421 24,448,446 24,477,885 RGD:9068941
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agt angiotensinogen JBrowse link NW_004955492 7,863,662 7,874,863 RGD:9068941
G Agtr2 angiotensin II receptor type 2 JBrowse link NW_004955534 3,653,112 3,654,248 RGD:9068941
G Gdnf glial cell derived neurotrophic factor JBrowse link NW_004955426 22,386,613 22,412,324 RGD:9068941
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link NW_004955416 1,812,725 1,825,528 RGD:9068941
G Hoxb7 homeobox B7 JBrowse link NW_004955451 12,630,276 12,634,641 RGD:9068941
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 JBrowse link NW_004955476 6,611,102 6,629,294 RGD:9068941
G Lhx1 LIM homeobox 1 JBrowse link NW_004955451 1,037,936 1,048,501 RGD:9068941
G Maged1 MAGE family member D1 JBrowse link NW_004955543 2,939,960 3,052,442 RGD:9068941
G Nog noggin JBrowse link NW_004955451 6,192,368 6,193,766 RGD:9068941
G Pax2 paired box 2 JBrowse link NW_004955485 9,351,913 9,430,607 RGD:9068941
G Pax8 paired box 8 JBrowse link NW_004955470 1,016,226 1,072,643 RGD:9068941
G Six1 SIX homeobox 1 JBrowse link NW_004955466 8,961,597 8,966,069 RGD:9068941
G Six4 SIX homeobox 4 JBrowse link NW_004955466 8,902,728 8,915,685 RGD:9068941
G Smo smoothened, frizzled class receptor JBrowse link NW_004955479 9,963,377 9,991,670 RGD:9068941
G Sox8 SRY-box transcription factor 8 JBrowse link NW_004955442 16,236,286 16,241,093 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004955478 941,684 945,563 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004955555 274,405 288,441 RGD:9068941
G Vegfa vascular endothelial growth factor A JBrowse link NW_004955437 9,527,445 9,541,908 RGD:9068941
G Wnt2b Wnt family member 2B JBrowse link NW_004955435 15,948,262 15,962,958 RGD:9068941
positive regulation of metanephric ureteric bud development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Basp1 brain abundant membrane attached signal protein 1 JBrowse link NW_004955426 6,149,756 6,193,222 RGD:9068941
G Wt1 WT1 transcription factor JBrowse link NW_004955476 10,464,688 10,504,473 RGD:9068941
positive regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004955421 24,448,446 24,477,885 RGD:9068941
G Gdnf glial cell derived neurotrophic factor JBrowse link NW_004955426 22,386,613 22,412,324 RGD:9068941
G Six1 SIX homeobox 1 JBrowse link NW_004955466 8,961,597 8,966,069 RGD:9068941
G Six4 SIX homeobox 4 JBrowse link NW_004955466 8,902,728 8,915,685 RGD:9068941
primary ureteric bud growth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lzts2 leucine zipper tumor suppressor 2 JBrowse link NW_004955485 9,182,984 9,187,144 RGD:9068941
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnf1b HNF1 homeobox B JBrowse link NW_004955451 320,283 371,420 RGD:9068941
G Six1 SIX homeobox 1 JBrowse link NW_004955466 8,961,597 8,966,069 RGD:9068941
G Six4 SIX homeobox 4 JBrowse link NW_004955466 8,902,728 8,915,685 RGD:9068941
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Six2 SIX homeobox 2 JBrowse link NW_004955441 12,029,530 12,033,214 RGD:9068941
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
ureteric bud elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnf1b HNF1 homeobox B JBrowse link NW_004955451 320,283 371,420 RGD:9068941
ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004955421 24,448,446 24,477,885 RGD:9068941
G Gdnf glial cell derived neurotrophic factor JBrowse link NW_004955426 22,386,613 22,412,324 RGD:9068941
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link NW_004955416 1,812,725 1,825,528 RGD:9068941
G Nog noggin JBrowse link NW_004955451 6,192,368 6,193,766 RGD:9068941
ureteric bud invasion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fmn1 formin 1 JBrowse link NW_004955416 1,365,797 1,774,025 RGD:9068941
G Kif26b kinesin family member 26B JBrowse link NW_004955406 8,289,774 8,738,131 RGD:9068941
G Sall1 spalt like transcription factor 1 JBrowse link NW_004955433 9,146,074 9,161,171 RGD:9068941
ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hes1 hes family bHLH transcription factor 1 JBrowse link NW_004955420 14,565,921 14,568,447 RGD:9068941
G Tacstd2 tumor associated calcium signal transducer 2 JBrowse link NW_004955464 1,282,989 1,284,785 RGD:9068941
G Wnt11 Wnt family member 11 JBrowse link NW_004955414 15,674,478 15,694,758 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14546
    developmental process 5877
      anatomical structure development 5446
        tube development 1000
          mesonephric tubule development 96
            ureteric bud development 95
              anterior/posterior pattern specification involved in ureteric bud development + 1
              mesenchymal cell proliferation involved in ureteric bud development 3
              metanephric part of ureteric bud development + 6
              ureter part of ureteric bud development 0
              ureteric bud morphogenesis + 65
Path 2
Term Annotations click to browse term
  biological_process 14546
    developmental process 5877
      anatomical structure development 5446
        multicellular organism development 4996
          system development 4466
            urogenital system development 323
              renal system development 284
                kidney development 274
                  mesonephros development 100
                    mesonephric epithelium development 96
                      mesonephric tubule development 96
                        ureteric bud development 95
                          anterior/posterior pattern specification involved in ureteric bud development + 1
                          mesenchymal cell proliferation involved in ureteric bud development 3
                          metanephric part of ureteric bud development + 6
                          ureter part of ureteric bud development 0
                          ureteric bud morphogenesis + 65
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.