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ONTOLOGY REPORT - ANNOTATIONS


Term:endoderm formation
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Accession:GO:0001706 term browser browse the term
Definition:The formation of the endoderm during gastrulation.
Synonyms:narrow_synonym: endoblast formation


show annotations for term's descendants           Sort by:
 
endoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 ISO (MGI:5498579|PMID:23824574)
(MGI:3625553|PMID:12194849)
MGI PMID:12194849, PMID:23824574 MGI:3625553, MGI:5498579 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 IEA Ensembl GO_REF:0000107 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
G DUSP1 dual specificity phosphatase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:172,768,096...172,771,195
Ensembl chr 5:172,768,096...172,771,195
JBrowse link
G DUSP2 dual specificity phosphatase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:96,143,166...96,145,468
Ensembl chr 2:96,143,169...96,145,440
JBrowse link
G DUSP4 dual specificity phosphatase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:29,333,064...29,350,684
Ensembl chr 8:29,333,064...29,350,684
JBrowse link
G DUSP5 dual specificity phosphatase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:110,497,907...110,511,533
Ensembl chr10:110,497,907...110,511,533
JBrowse link
G EOMES eomesodermin ISS UniProtKB GO_REF:0000024 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711
JBrowse link
G GATA4 GATA binding protein 4 ISO (MGI:77407|PMID:8582296) MGI PMID:8582296 MGI:77407 NCBI chr 8:11,676,931...11,760,002
Ensembl chr 8:11,676,959...11,760,002
JBrowse link
G LHX1 LIM homeobox 1 ISS UniProtKB GO_REF:0000024 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
G MIXL1 Mix paired-like homeobox ISO (MGI:3695524|PMID:17151016) MGI PMID:17151016 MGI:3695524 NCBI chr 1:226,223,664...226,227,060
Ensembl chr 1:226,223,618...226,227,060
Ensembl chr 1:226,223,618...226,227,060
JBrowse link
G NOG noggin IEA Ensembl GO_REF:0000107 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G SMAD2 SMAD family member 2 IEA Ensembl GO_REF:0000107 NCBI chr18:47,808,957...47,931,188
Ensembl chr18:47,808,957...47,931,146
JBrowse link
G SOX17 SRY-box transcription factor 17 IDA (PMID:18682240) UniProtKB PMID:18682240 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892
JBrowse link
G SOX7 SRY-box transcription factor 7 IDA (PMID:18682240) UniProtKB PMID:18682240 NCBI chr 8:10,723,768...10,730,511
Ensembl chr 8:10,723,768...10,730,511
JBrowse link
G TBX20 T-box transcription factor 20 ISS BHF-UCL GO_REF:0000024 NCBI chr 7:35,199,936...35,254,100
Ensembl chr 7:35,202,430...35,254,100
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr17:77,958,853...78,108,835
Ensembl chr17:77,959,240...78,108,835
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL11A1 collagen type XI alpha 1 chain IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 1:102,876,473...103,108,580
Ensembl chr 1:102,876,467...103,108,872
JBrowse link
G COL12A1 collagen type XII alpha 1 chain IEP
IBA
(PMID:23154389)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:23154389 NCBI chr 6:75,084,326...75,206,262
Ensembl chr 6:75,084,326...75,206,053
JBrowse link
G COL4A2 collagen type IV alpha 2 chain IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr13:110,307,284...110,513,209
Ensembl chr13:110,305,812...110,513,209
JBrowse link
G COL6A1 collagen type VI alpha 1 chain IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr21:45,981,770...46,005,048
Ensembl chr21:45,981,769...46,005,050
Ensembl chr21:45,981,769...46,005,050
JBrowse link
G COL7A1 collagen type VII alpha 1 chain IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 3:48,564,073...48,595,329
Ensembl chr 3:48,564,073...48,595,267
JBrowse link
G COL8A1 collagen type VIII alpha 1 chain IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 3:99,638,594...99,799,217
Ensembl chr 3:99,638,475...99,799,226
JBrowse link
G FN1 fibronectin 1 IDA (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 2:215,360,862...215,436,167
Ensembl chr 2:215,360,440...215,436,073
JBrowse link
G GATA6 GATA binding protein 6 ISO (MGI:1315079|PMID:9832509) MGI PMID:9832509 MGI:1315079 NCBI chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
JBrowse link
G HMGA2 high mobility group AT-hook 2 IMP (PMID:17624332) UniProtKB PMID:17624332 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G HSBP1 heat shock factor binding protein 1 ISO (MGI:5553204|PMID:24380799) MGI PMID:24380799 MGI:5553204 NCBI chr16:83,807,978...83,819,737
Ensembl chr16:83,807,978...83,819,737
JBrowse link
G INHBA inhibin subunit beta A IDA (PMID:21828274) BHF-UCL PMID:21828274 NCBI chr 7:41,685,101...41,710,532
Ensembl chr 7:41,667,168...41,705,834
JBrowse link
G ITGA4 integrin subunit alpha 4 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 2:181,457,205...181,538,940
Ensembl chr 2:181,457,202...181,538,940
JBrowse link
G ITGA5 integrin subunit alpha 5 IMP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr12:54,395,261...54,419,266
Ensembl chr12:54,395,261...54,419,266
JBrowse link
G ITGA7 integrin subunit alpha 7 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr12:55,684,568...55,716,037
Ensembl chr12:55,684,568...55,716,043
JBrowse link
G ITGAV integrin subunit alpha V IMP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 2:186,590,056...186,680,901
Ensembl chr 2:186,590,056...186,680,901
JBrowse link
G ITGB2 integrin subunit beta 2 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr21:44,885,949...44,928,815
Ensembl chr21:44,885,953...44,931,989
JBrowse link
G ITGB5 integrin subunit beta 5 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 3:124,761,948...124,901,418
Ensembl chr 3:124,761,948...124,901,418
JBrowse link
G LAMA3 laminin subunit alpha 3 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr18:23,689,443...23,955,066
Ensembl chr18:23,689,443...23,956,222
JBrowse link
G LAMB1 laminin subunit beta 1 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 7:107,923,799...108,003,176
Ensembl chr 7:107,923,799...108,003,187
JBrowse link
G LAMB3 laminin subunit beta 3 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 1:209,614,870...209,652,467
Ensembl chr 1:209,614,870...209,652,425
JBrowse link
G MIXL1 Mix paired-like homeobox ISS BHF-UCL GO_REF:0000024 NCBI chr 1:226,223,664...226,227,060
Ensembl chr 1:226,223,618...226,227,060
Ensembl chr 1:226,223,618...226,227,060
JBrowse link
G MMP14 matrix metallopeptidase 14 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr14:22,836,585...22,847,758
Ensembl chr14:22,836,560...22,849,027
JBrowse link
G MMP15 matrix metallopeptidase 15 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr16:58,025,754...58,046,901
Ensembl chr16:58,025,754...58,046,901
JBrowse link
G MMP2 matrix metallopeptidase 2 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr16:55,478,830...55,506,691
Ensembl chr16:55,389,700...55,506,691
JBrowse link
G MMP8 matrix metallopeptidase 8 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr11:102,711,796...102,724,967
Ensembl chr11:102,711,796...102,727,050
JBrowse link
G MMP9 matrix metallopeptidase 9 IEP (PMID:23154389) UniProtKB PMID:23154389 NCBI chr20:46,008,908...46,016,561
Ensembl chr20:46,008,908...46,016,561
JBrowse link
G NODAL nodal growth differentiation factor IMP (PMID:21741376) BHF-UCL PMID:21741376 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase ISS UniProtKB GO_REF:0000024 NCBI chr 3:47,016,431...47,164,113
Ensembl chr 3:47,016,429...47,164,113
Ensembl chr 3:47,016,429...47,164,113
JBrowse link
G VTN vitronectin IDA (PMID:23154389) UniProtKB PMID:23154389 NCBI chr17:28,367,284...28,370,307
Ensembl chr17:28,367,284...28,373,091
JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 ISS UniProtKB GO_REF:0000024 NCBI chr 1:193,122,031...193,254,815
Ensembl chr 1:193,121,958...193,254,815
Ensembl chr 1:193,121,958...193,254,815
JBrowse link
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component ISS UniProtKB GO_REF:0000024 NCBI chr11:10,751,246...10,779,746
Ensembl chr11:10,751,246...10,801,625
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component ISS UniProtKB GO_REF:0000024 NCBI chr15:51,938,024...51,971,798
Ensembl chr15:51,938,025...51,971,778
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component ISS UniProtKB GO_REF:0000024 NCBI chr19:39,385,629...39,391,106
Ensembl chr19:39,385,629...39,391,154
JBrowse link
G POU5F1 POU class 5 homeobox 1 ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component ISS UniProtKB GO_REF:0000024 NCBI chr15:41,417,104...41,483,563
Ensembl chr15:41,408,408...41,483,563
JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA6 GATA binding protein 6 IEA Ensembl GO_REF:0000107 NCBI chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
JBrowse link
G SOX17 SRY-box transcription factor 17 IEA Ensembl GO_REF:0000107 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892
JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711
JBrowse link
G HNF1B HNF1 homeobox B IEA Ensembl GO_REF:0000107 NCBI chr17:37,686,431...37,745,059
Ensembl chr17:37,686,431...37,745,105
JBrowse link
G NANOG Nanog homeobox IDA (PMID:20713518) MGI PMID:20713518 NCBI chr12:7,789,402...7,799,146
Ensembl chr12:7,787,794...7,799,146
JBrowse link
G POU5F1 POU class 5 homeobox 1 IDA (PMID:20713518) MGI PMID:20713518 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731
JBrowse link
G SOX2 SRY-box transcription factor 2 IDA (PMID:21245162) MGI PMID:21245162 NCBI chr 3:181,711,925...181,714,436
Ensembl chr 3:181,711,925...181,714,436
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL5A1 collagen type V alpha 1 chain IDA (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 9:134,641,789...134,844,843
Ensembl chr 9:134,641,803...134,844,843
Ensembl chr 9:134,641,803...134,844,843
JBrowse link
G COL5A2 collagen type V alpha 2 chain IDA (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 2:189,031,898...189,225,301
Ensembl chr 2:189,031,898...189,225,312
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MESP1 mesoderm posterior bHLH transcription factor 1 ISS BHF-UCL GO_REF:0000024 NCBI chr15:89,734,772...89,751,309
Ensembl chr15:89,748,661...89,751,310
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone IMP (PMID:23595991) UniProt PMID:23595991 NCBI chr 5:135,334,381...135,401,998
Ensembl chr 5:135,333,900...135,399,914
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 IDA (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      anatomical structure formation involved in morphogenesis 1278
        formation of primary germ layer 132
          endoderm formation 57
            endodermal cell differentiation + 46
Path 2
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      anatomical structure development 6873
        multicellular organism development 6346
          embryo development 1325
            embryonic morphogenesis 700
              gastrulation 208
                formation of primary germ layer 132
                  endoderm formation 57
                    endodermal cell differentiation + 46
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.