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ONTOLOGY REPORT - ANNOTATIONS


Term:somitogenesis
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Accession:GO:0001756 term browser browse the term
Definition:The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.
Synonyms:exact_synonym: formation of mesodermal clusters
 xref: Wikipedia:Somitogenesis


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somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl-interactor 1 ISO
IEA
MGI:MGI:3578145 (MGI:MGI:3577662|PMID:15755804)
GO_REF:0000107
RGD
Ensembl
PMID:15755804 GO_REF:0000107, MGI:MGI:3577662 NCBI chr17:89,951,662...90,033,334
Ensembl chr17:89,951,752...90,033,328
JBrowse link
G Atm ATM serine/threonine kinase ISO MGI:MGI:104779 (MGI:MGI:3624894|PMID:16687486) RGD PMID:16687486 MGI:MGI:3624894 NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045
JBrowse link
G Axin2 axin 2 ISO
IEA
(MGI:MGI:3037351|PMID:12636920)
GO_REF:0000107
RGD
Ensembl
PMID:12636920 GO_REF:0000107, MGI:MGI:3037351 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:MGI:2158343 (MGI:MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:MGI:3702797 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISO
ISS
(MGI:MGI:5296388|PMID:22072575)
GO_REF:0000024
RGD
UniProt
PMID:22072575 GO_REF:0000024, MGI:MGI:5296388 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISS
ISO
GO_REF:0000024
MGI:MGI:1096325 (MGI:MGI:3578712|PMID:15902259), (MGI:MGI:5545944|PMID:23072809)
UniProt
RGD
PMID:15902259, PMID:23072809 GO_REF:0000024, MGI:MGI:3578712, MGI:MGI:5545944 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dll3 delta like canonical Notch ligand 3 IEA
ISO
GO_REF:0000107
MGI:MGI:1857008 (MGI:MGI:1095777|PMID:9272948), (MGI:MGI:3620337|PMID:15170697)
Ensembl
RGD
PMID:9272948, PMID:15170697 GO_REF:0000107, MGI:MGI:1095777, MGI:MGI:3620337 NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
JBrowse link
G Ep300 E1A binding protein p300 ISO MGI:MGI:1343101 (MGI:MGI:3583034|PMID:15937931) RGD PMID:15937931 MGI:MGI:3583034 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3822451 (MGI:MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Foxb1 forkhead box B1 ISO
ISS
(MGI:MGI:3771770|PMID:18064677)
GO_REF:0000024
RGD
UniProt
PMID:18064677 GO_REF:0000024, MGI:MGI:3771770 NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
JBrowse link
G Foxc1 forkhead box C1 ISO UniProtKB:Q61850 (MGI:MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:MGI:2150572 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO UniProtKB:Q61572 (MGI:MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:MGI:2150572 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Foxf1 forkhead box F1 ISO MGI:MGI:1929432 (MGI:MGI:1928688|PMID:11124112) RGD PMID:11124112 MGI:MGI:1928688 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Hes7 hes family bHLH transcription factor 7 ISO MGI:MGI:2652222|MGI:MGI:3046536 (MGI:MGI:2152470|PMID:11641270), (MGI:MGI:3046002|PMID:15170214), (MGI:MGI:4367298|PMID:19779553) RGD PMID:11641270, PMID:15170214, PMID:19779553 MGI:MGI:2152470, MGI:MGI:3046002, MGI:MGI:4367298 NCBI chr10:55,704,485...55,710,523
Ensembl chr10:55,707,164...55,709,687
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 ISO (MGI:MGI:3578569|PMID:15857914) RGD PMID:15857914 MGI:MGI:3578569 NCBI chr 1:213,765,825...213,767,841
Ensembl chr 1:213,766,758...213,767,815
JBrowse link
G Kat2a lysine acetyltransferase 2A ISO MGI:MGI:1276116|MGI:MGI:3711317 (MGI:MGI:3583034|PMID:15937931), (MGI:MGI:3709911|PMID:17325035) RGD PMID:15937931, PMID:17325035 MGI:MGI:3583034, MGI:MGI:3709911 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IEA
ISO
GO_REF:0000107
MGI:MGI:1933764|MGI:MGI:98504 (MGI:MGI:1334099|PMID:10090727), (MGI:MGI:3510574|PMID:15545629)
Ensembl
RGD
PMID:10090727, PMID:15545629 GO_REF:0000107, MGI:MGI:1334099, MGI:MGI:3510574 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISS
ISO
GO_REF:0000024
MGI:MGI:3775061 (MGI:MGI:3774705|PMID:18234727), (MGI:MGI:5545944|PMID:23072809)
UniProt
RGD
PMID:18234727, PMID:23072809 GO_REF:0000024, MGI:MGI:3774705, MGI:MGI:5545944 NCBI chr12:16,117,767...16,126,211
Ensembl chr12:16,118,634...16,126,953
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:98958 (MGI:MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:MGI:4413372 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:MGI:4839486 (MGI:MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:MGI:4839544 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 ISO MGI:MGI:104659|MGI:MGI:3580268 (MGI:MGI:3578712|PMID:15902259) RGD PMID:15902259 MGI:MGI:3578712 NCBI chr 1:141,550,633...141,553,239
Ensembl chr 1:141,550,633...141,553,230
JBrowse link
G Mib1 mindbomb E3 ubiquitin protein ligase 1 ISO MGI:MGI:3603514 (MGI:MGI:3603078|PMID:16000382) RGD PMID:16000382 MGI:MGI:3603078 NCBI chr18:1,970,914...2,094,920
Ensembl chr18:1,970,914...2,094,920
JBrowse link
G Msgn1 mesogenin 1 ISO MGI:MGI:1933263 (MGI:MGI:1928575|PMID:11124811), (MGI:MGI:5545970|PMID:21750544) RGD PMID:11124811, PMID:21750544 MGI:MGI:1928575, MGI:MGI:5545970 NCBI chr 6:36,876,165...36,876,805
Ensembl chr 6:36,876,165...36,876,805
JBrowse link
G Myf5 myogenic factor 5 ISO MGI:MGI:1857219|MGI:MGI:1857973|MGI:MGI:2449231 (MGI:MGI:1861090|PMID:10929709), (MGI:MGI:3849775|PMID:19531352), (MGI:MGI:78390|PMID:8565825) RGD PMID:8565825, PMID:10929709, PMID:19531352 MGI:MGI:1861090, MGI:MGI:3849775, MGI:MGI:78390 NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764
JBrowse link
G Myf6 myogenic factor 6 ISO MGI:MGI:1857220 (MGI:MGI:76810|PMID:7588068) RGD PMID:7588068 MGI:MGI:76810 NCBI chr 7:49,739,643...49,741,490
Ensembl chr 7:49,739,646...49,741,540
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:MGI:3578145 (MGI:MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nkx3-1 NK3 homeobox 1 ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:51,065,316...51,067,908
Ensembl chr15:51,065,316...51,068,421
JBrowse link
G Nle1 notchless homolog 1 ISO MGI:MGI:2176174|MGI:MGI:5553357 (MGI:MGI:5608942|PMID:24875805) RGD PMID:24875805 MGI:MGI:5608942 NCBI chr10:70,250,959...70,261,880
Ensembl chr10:70,250,959...70,259,553
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO MGI:MGI:3801303 (MGI:MGI:4459579|PMID:20484223) RGD PMID:20484223 MGI:MGI:4459579 NCBI chr 1:192,064,586...192,088,547
Ensembl chr 1:192,064,589...192,088,520
JBrowse link
G Pax1 paired box 1 ISO MGI:MGI:3603176 (MGI:MGI:3590033|PMID:16093716) RGD PMID:16093716 MGI:MGI:3590033 NCBI chr 3:141,577,124...141,589,849
Ensembl chr 3:141,577,504...141,589,849
JBrowse link
G Pcdh8 protocadherin 8 ISO (MGI:MGI:2451199|PMID:12591245) RGD PMID:12591245 MGI:MGI:2451199 NCBI chr15:62,196,469...62,201,498
Ensembl chr15:62,197,060...62,200,837
JBrowse link
G Plxna2 plexin A2 ISO (PMID:19666519) RGD PMID:19666519 NCBI chr13:113,373,569...113,570,774
Ensembl chr13:113,373,578...113,571,648
JBrowse link
G Pofut1 protein O-fucosyltransferase 1 ISO MGI:MGI:2662305 (MGI:MGI:2660984|PMID:12697902) RGD PMID:12697902 MGI:MGI:2660984 NCBI chr 3:148,722,864...148,749,743
Ensembl chr 3:148,722,955...148,747,208
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 ISO
IEA
MGI:MGI:2137554 (MGI:MGI:1267118|PMID:9636176)
GO_REF:0000107
RGD
Ensembl
PMID:9636176 GO_REF:0000107, MGI:MGI:1267118 NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO MGI:MGI:107202 (MGI:MGI:3624894|PMID:16687486) RGD PMID:16687486 MGI:MGI:3624894 NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
JBrowse link
G Psen1 presenilin 1 ISO MGI:MGI:109284|MGI:MGI:1930934 (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553), (MGI:MGI:87649|PMID:9153393) RGD PMID:9153393, PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298, MGI:MGI:87649 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Psen2 presenilin 2 ISO MGI:MGI:1202717 (MGI:MGI:1347695|PMID:10557208), (MGI:MGI:4367298|PMID:19779553) RGD PMID:10557208, PMID:19779553 MGI:MGI:1347695, MGI:MGI:4367298 NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO MGI:MGI:1857411 (MGI:MGI:4367298|PMID:19779553) RGD PMID:19779553 MGI:MGI:4367298 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO MGI:MGI:3513254 (MGI:MGI:3613215|PMID:16326386), (MGI:MGI:3715395|PMID:17531978) RGD PMID:16326386, PMID:17531978 MGI:MGI:3613215, MGI:MGI:3715395 NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 ISO MGI:MGI:2183225 (MGI:MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:MGI:3037488 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
JBrowse link
G Sema3c semaphorin 3C ISO (PMID:19666519) RGD PMID:19666519 NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO MGI:MGI:108078 (MGI:MGI:3618960|PMID:16467359), (PMID:10654605) RGD PMID:10654605, PMID:16467359 MGI:MGI:3618960 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:892014 (MGI:MGI:3618960|PMID:16467359) RGD PMID:16467359 MGI:MGI:3618960 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:MGI:108051 (MGI:MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Tbx18 T-box transcription factor 18 ISO
IBA
MGI:MGI:3044914 (MGI:MGI:3044041|PMID:15155583)
PMID:21873635
RGD PMID:15155583, PMID:21873635 MGI:MGI:3044041, RGD:13792537 NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363
JBrowse link
G Tbx19 T-box transcription factor 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:83,403,263...83,426,305
Ensembl chr13:83,403,264...83,425,641
JBrowse link
G Tbxt T-box transcription factor T ISO
IBA
MGI:MGI:1856158|MGI:MGI:1857760|MGI:MGI:3042264 (MGI:MGI:3056222|PMID:15384171), (MGI:MGI:3701028|PMID:16835439), (MGI:MGI:64493|PMID:8293872)
PMID:21873635
RGD PMID:8293872, PMID:15384171, PMID:16835439, PMID:21873635 MGI:MGI:3056222, MGI:MGI:3701028, MGI:MGI:64493, RGD:13792537 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Tcap titin-cap ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:86,337,705...86,338,414
Ensembl chr10:86,337,728...86,338,411
JBrowse link
G Tcf15 transcription factor 15 ISO MGI:MGI:1929775 (MGI:MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:MGI:84545 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 ISO MGI:MGI:4456438 (MGI:MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:MGI:4453264 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Tp53 tumor protein p53 ISO MGI:MGI:1343101 (MGI:MGI:3709913|PMID:17320900) RGD PMID:17320900 MGI:MGI:3709913 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Ttn titin ISO (PMID:9817758) RGD PMID:9817758 NCBI chr 3:63,565,160...63,837,815 JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:MGI:1857088|MGI:MGI:1857489 (MGI:MGI:3037351|PMID:12636920), (MGI:MGI:3611726|PMID:16291790), (MGI:MGI:64780|PMID:8299937) RGD PMID:8299937, PMID:12636920, PMID:16291790 MGI:MGI:3037351, MGI:MGI:3611726, MGI:MGI:64780 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1298218 (MGI:MGI:4413372|PMID:19795512)
GO_REF:0000107
RGD
Ensembl
PMID:19795512 GO_REF:0000107, MGI:MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO MGI:MGI:1927345 (MGI:MGI:3708426|PMID:17116431) RGD PMID:17116431 MGI:MGI:3708426 NCBI chr 4:5,842,013...5,860,516
Ensembl chr 4:5,841,998...5,860,527
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO MGI:MGI:2387501 (MGI:MGI:3590396|PMID:16157277), (MGI:MGI:3624924|PMID:16598713) RGD PMID:16157277, PMID:16598713 MGI:MGI:3590396, MGI:MGI:3624924 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:98956 (MGI:MGI:1891551|PMID:11029008)
PMID:21873635
RGD PMID:11029008, PMID:21873635 MGI:MGI:1891551, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:MGI:4839484 (MGI:MGI:4839483|PMID:20630950) RGD PMID:20630950 MGI:MGI:4839483 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:MGI:1298218 (MGI:MGI:1891551|PMID:11029008) RGD PMID:11029008 MGI:MGI:1891551 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 ISO
IEA
MGI:MGI:108078|MGI:MGI:1860298 (MGI:MGI:3793375|PMID:18257070)
GO_REF:0000107
RGD
Ensembl
PMID:18257070 GO_REF:0000107, MGI:MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO
ISS
(MGI:MGI:5545944|PMID:23072809)
GO_REF:0000024
RGD
UniProt
PMID:23072809 GO_REF:0000024, MGI:MGI:5545944 NCBI chr12:16,117,767...16,126,211
Ensembl chr12:16,118,634...16,126,953
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein ISO MGI:MGI:5317888 (MGI:MGI:5317364|PMID:21795391) RGD PMID:21795391 MGI:MGI:5317364 NCBI chr 3:2,396,143...2,398,697
Ensembl chr 3:2,396,143...2,398,689
JBrowse link
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha ISO UniProtKB:F6T226 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:109,481,352...109,621,462
Ensembl chr 8:109,482,614...109,621,408
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeo box 1 ISO
IEA
ISS
(MGI:MGI:5301472|PMID:22015720)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22015720 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5301472 NCBI chr18:56,337,485...56,355,477
Ensembl chr18:56,338,336...56,355,490
JBrowse link
G Cdx2 caudal type homeo box 2 ISO (MGI:MGI:5301472|PMID:22015720) RGD PMID:22015720 MGI:MGI:5301472 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5689216|PMID:26114479)
Ensembl
UniProt
RGD
PMID:26114479 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5689216 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 ISO MGI:MGI:3512139|MGI:MGI:97487 (MGI:MGI:3820487|PMID:17974128) RGD PMID:17974128 MGI:MGI:3820487 NCBI chr 1:243,662,819...243,669,312
Ensembl chr 1:243,662,823...243,669,312
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO MGI:MGI:1933734 (MGI:MGI:4367298|PMID:19779553)
(PMID:19061953)
RGD PMID:19061953, PMID:19779553 MGI:MGI:4367298 NCBI chr12:16,117,767...16,126,211
Ensembl chr12:16,118,634...16,126,953
JBrowse link
G Notch1 notch receptor 1 ISO MGI:MGI:1857230 (MGI:MGI:72973|PMID:7789282) RGD PMID:7789282 MGI:MGI:72973 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Pax3 paired box 3 ISO MGI:MGI:1330307|MGI:MGI:1856173 (MGI:MGI:3820487|PMID:17974128) RGD PMID:17974128 MGI:MGI:3820487 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:MGI:1100864|MGI:MGI:1857891 (MGI:MGI:3578715|PMID:15889094) RGD PMID:15889094 MGI:MGI:3578715 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3822451 (MGI:MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:MGI:1857725 (MGI:MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:MGI:2157654 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Gdf3 growth differentiation factor 3 ISO MGI:MGI:3612535 (MGI:MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:MGI:3611720 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998
JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:MGI:5448825 (MGI:MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Lhx1 LIM homeobox 1 ISO MGI:MGI:1857502|MGI:MGI:1857848 (MGI:MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:MGI:2157654 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 ISO
IBA
MGI:MGI:3580268 (MGI:MGI:4459001|PMID:20346937)
PMID:21873635
RGD PMID:20346937, PMID:21873635 MGI:MGI:4459001, RGD:13792537 NCBI chr 1:141,550,633...141,553,239
Ensembl chr 1:141,550,633...141,553,230
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein ISO MGI:MGI:5438570 (MGI:MGI:5438472|PMID:21998026) RGD PMID:21998026 MGI:MGI:5438472 NCBI chr 3:2,396,143...2,398,697
Ensembl chr 3:2,396,143...2,398,689
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:1857502 (MGI:MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:MGI:2157654 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Ripply1 ripply transcriptional repressor 1 ISO MGI:MGI:2685968 (MGI:MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:MGI:4459001 NCBI chr  X:111,099,420...111,114,835
Ensembl chr  X:111,099,930...111,102,464
JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO MGI:MGI:3614797 (MGI:MGI:3613215|PMID:16326386), (MGI:MGI:4459001|PMID:20346937) RGD PMID:16326386, PMID:20346937 MGI:MGI:3613215, MGI:MGI:4459001 NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041
JBrowse link
G Smad4 SMAD family member 4 ISO
IEA
MGI:MGI:1858049 (MGI:MGI:1195384|PMID:9420335)
GO_REF:0000107
RGD
Ensembl
PMID:9420335 GO_REF:0000107, MGI:MGI:1195384 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Tbx6 T-box transcription factor 6 ISO (MGI:MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:MGI:4459001 NCBI chr 1:198,214,797...198,218,706
Ensembl chr 1:198,214,797...198,218,706
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 ISO MGI:MGI:4456438 (MGI:MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:MGI:4453264 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
somite specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein ISO
IEA
(PMID:7586755)
GO_REF:0000107
RGD
Ensembl
PMID:7586755 GO_REF:0000107 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO
IEA
MGI:MGI:3038950 (MGI:MGI:3034157|PMID:14960495)
GO_REF:0000107
RGD
Ensembl
PMID:14960495 GO_REF:0000107, MGI:MGI:3034157 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Meox1 mesenchyme homeobox 1 ISO MGI:MGI:103219 (MGI:MGI:2669571|PMID:12925591) RGD PMID:12925591 MGI:MGI:2669571 NCBI chr10:89,797,011...89,817,009
Ensembl chr10:89,797,038...89,816,491
JBrowse link
G Meox2 mesenchyme homeobox 2 ISO
IEA
MGI:MGI:103220 (MGI:MGI:2669571|PMID:12925591)
GO_REF:0000107
RGD
Ensembl
PMID:12925591 GO_REF:0000107, MGI:MGI:2669571 NCBI chr 6:56,625,768...56,689,195
Ensembl chr 6:56,625,650...56,689,238
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO MGI:MGI:108078|MGI:MGI:892014 (MGI:MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:MGI:3793375 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:2673982 (MGI:MGI:3055483|PMID:15469977)
PMID:21873635
RGD PMID:15469977, PMID:21873635 MGI:MGI:3055483, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO
IEA
MGI:MGI:108078|MGI:MGI:1329040 (MGI:MGI:3793375|PMID:18257070)
GO_REF:0000107
RGD
Ensembl
PMID:18257070 GO_REF:0000107, MGI:MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:1329040|MGI:MGI:892014 (MGI:MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:MGI:3793375 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    developmental process 6813
      anatomical structure formation involved in morphogenesis 1210
        somitogenesis 77
          Notch signaling pathway involved in somitogenesis + 2
          Wnt signaling pathway involved in somitogenesis 4
          axis elongation involved in somitogenesis + 5
          fibroblast growth factor receptor signaling pathway involved in somitogenesis 0
          regulation of somitogenesis + 9
          retinoic acid receptor signaling pathway involved in somitogenesis 1
          somite rostral/caudal axis specification 14
          somite specification 4
Path 2
Term Annotations click to browse term
  biological_process 20017
    developmental process 6813
      anatomical structure development 6256
        multicellular organism development 5735
          pattern specification process 496
            regionalization 392
              segmentation 108
                somitogenesis 77
                  Notch signaling pathway involved in somitogenesis + 2
                  Wnt signaling pathway involved in somitogenesis 4
                  axis elongation involved in somitogenesis + 5
                  fibroblast growth factor receptor signaling pathway involved in somitogenesis 0
                  regulation of somitogenesis + 9
                  retinoic acid receptor signaling pathway involved in somitogenesis 1
                  somite rostral/caudal axis specification 14
                  somite specification 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.