Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:blastocyst formation
go back to main search page
Accession:GO:0001825 term browser browse the term
Definition:The initial formation of a blastocyst from a solid ball of cells known as a morula.
Comment:See also the Anatomical Dictionary for Mouse Development ontology term 'TS3, compacted morula ; EMAP:9'.


show annotations for term's descendants           Sort by:
 
blastocyst formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Bysl bystin-like ISO (MGI:3700849|PMID:17242206) RGD PMID:17242206 MGI:3700849 NCBI chr 9:15,393,461...15,403,212
Ensembl chr 9:15,393,330...15,403,117
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 ISO MGI:3050548 (MGI:3757893|PMID:17784788) RGD PMID:17784788 MGI:3757893 NCBI chr15:27,720,220...27,736,528
Ensembl chr15:27,720,223...27,733,785
JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) IEA
ISO
GO_REF:0000107
UniProtKB:Q61139 (MGI:5702364|PMID:26416966)
Ensembl
RGD
PMID:26416966 GO_REF:0000107, MGI:5702364 NCBI chr 1:142,185,092...142,198,167
Ensembl chr 1:142,185,094...142,197,182
JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr11:24,293,845...24,322,822
Ensembl chr11:24,263,281...24,322,815
JBrowse link
G Kdm4c lysine demethylase 4C ISO (MGI:4421125|PMID:19696013) RGD PMID:19696013 MGI:4421125 NCBI chr 5:90,800,139...91,012,662
Ensembl chr 5:90,800,082...91,012,659
JBrowse link
G Matr3 matrin 3 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107, MGI:5913376 NCBI chr18:28,351,691...28,390,764
Ensembl chr18:28,361,283...28,390,717
JBrowse link
G Mfn2 mitofusin 2 ISO (MGI:3587532|PMID:16083859) RGD PMID:16083859 MGI:3587532 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145
JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 7:119,978,981...119,996,824
Ensembl chr 7:119,978,983...119,996,824
JBrowse link
G Mxi1 MAX interactor 1, dimerization protein ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:274,030,748...274,090,071
Ensembl chr 1:274,030,978...274,090,071
JBrowse link
G Nop2 NOP2 nucleolar protein ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:157,646,759...157,658,502
Ensembl chr 4:157,647,082...157,658,390
JBrowse link
G Pbrm1 polybromo 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr16:7,103,714...7,202,899
Ensembl chr16:7,103,998...7,200,362
JBrowse link
G Pnldc1 PARN like, ribonuclease domain containing 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:48,038,830...48,058,400
Ensembl chr 1:48,039,909...48,058,400
JBrowse link
G Prickle2 prickle planar cell polarity protein 2 ISO MGI:4941925 (MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:5319591 NCBI chr 4:124,238,167...124,584,176
Ensembl chr 4:124,238,167...124,338,176
JBrowse link
G Ptpn18 protein tyrosine phosphatase, non-receptor type 18 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 9:40,972,089...40,988,790
Ensembl chr 9:40,972,089...40,988,790
JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737, PMID:27869233 MGI:5605165, MGI:5913376 NCBI chr 9:16,508,477...16,516,502
Ensembl chr 9:16,508,799...16,513,120
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737, PMID:27869233 MGI:5605165, MGI:5913376 NCBI chr 7:123,980,251...123,990,139
Ensembl chr 7:123,980,251...123,990,139
JBrowse link
G Rtn4 reticulon 4 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107, MGI:5913376 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737, PMID:27869233 MGI:5605165, MGI:5913376 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737, PMID:27869233 MGI:5605165, MGI:5913376 NCBI chr 6:29,991,232...29,999,668
Ensembl chr 6:29,991,307...29,999,410
JBrowse link
G Skil SKI-like proto-oncogene ISO MGI:2387096 (MGI:1858539|PMID:10811619) RGD PMID:10811619 MGI:1858539 NCBI chr 2:115,862,932...115,891,304
Ensembl chr 2:115,866,701...115,891,097
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
JBrowse link
G Tead4 TEA domain transcription factor 4 ISO MGI:3763362 (MGI:3811945|PMID:18804437) RGD PMID:18804437 MGI:3811945 NCBI chr 4:161,542,566...161,619,848
Ensembl chr 4:161,540,130...161,587,222
JBrowse link
G Tjp1 tight junction protein 1 ISO (MGI:3797149|PMID:18423437) RGD PMID:18423437 MGI:3797149 NCBI chr 1:126,146,489...126,515,359
Ensembl chr 1:126,146,489...126,227,469
JBrowse link
G Tm4sf1 transmembrane 4 L six family member 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:147,382,866...147,392,062
Ensembl chr 2:147,382,866...147,392,062
JBrowse link
G Txnrd3 thioredoxin reductase 3 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:121,612,332...121,650,543
Ensembl chr 4:121,612,332...121,650,571
JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:6,930,018...6,957,027
Ensembl chr12:6,929,978...6,956,984
JBrowse link
G Wdr74 WD repeat domain 74 ISO (MGI:5287298|PMID:21799883), (MGI:5913376|PMID:27869233) RGD PMID:21799883, PMID:27869233 MGI:5287298, MGI:5913376 NCBI chr 1:224,933,906...224,938,659
Ensembl chr 1:224,933,529...224,938,662
JBrowse link
G Zp3 zona pellucida glycoprotein 3 IEA
ISO
ISS
GO_REF:0000107
(MGI:4943828|PMID:20382503)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20382503 GO_REF:0000024, GO_REF:0000107, MGI:4943828 NCBI chr12:23,735,225...23,752,734
Ensembl chr12:23,735,223...23,742,190
JBrowse link
inner cell mass cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:1857856 (MGI:1346632|PMID:10518496) RGD PMID:10518496 MGI:1346632 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Nle1 notchless homolog 1 ISO MGI:3624778 (MGI:3623851|PMID:16611995) RGD PMID:16611995 MGI:3623851 NCBI chr10:70,250,959...70,261,880
Ensembl chr10:70,250,959...70,259,553
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO (MGI:3844762|PMID:19372391), (MGI:4822076|PMID:20639862), (MGI:4939073|PMID:21295276) RGD PMID:19372391, PMID:20639862, PMID:21295276 MGI:3844762, MGI:4822076, MGI:4939073 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
inner cell mass cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 ISO MGI:1354386 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr 1:1,784,078...1,817,310
Ensembl chr 1:1,784,078...1,817,310
JBrowse link
G Lats2 large tumor suppressor kinase 2 ISO MGI:1333883 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr15:37,943,609...37,995,175
Ensembl chr15:37,943,609...37,983,882
JBrowse link
G Prdm14 PR/SET domain 14 ISO (MGI:5528721|PMID:24183668) RGD PMID:24183668 MGI:5528721 NCBI chr 5:5,710,076...5,730,560
Ensembl chr 5:5,710,392...5,730,560
JBrowse link
inner cell mass cellular morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 ISO MGI:1354386 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr 1:1,784,078...1,817,310
Ensembl chr 1:1,784,078...1,817,310
JBrowse link
G Lats2 large tumor suppressor kinase 2 ISO MGI:1333883 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr15:37,943,609...37,995,175
Ensembl chr15:37,943,609...37,983,882
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:3717121 (MGI:4946462|PMID:21146513) RGD PMID:21146513 MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
trophectodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:1857117 (MGI:1095761|PMID:9272950) RGD PMID:9272950 MGI:1095761 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Bysl bystin-like IEA
ISO
GO_REF:0000107
(MGI:3700849|PMID:17242206)
Ensembl
RGD
PMID:17242206 GO_REF:0000107, MGI:3700849 NCBI chr 9:15,393,461...15,403,212
Ensembl chr 9:15,393,330...15,403,117
JBrowse link
G Cdh1 cadherin 1 ISO MGI:3696711 (MGI:3695521|PMID:17138661) RGD PMID:17138661 MGI:3695521 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Cdx2 caudal type homeo box 2 ISO MGI:1857928 (MGI:3612803|PMID:16325584), (MGI:4819480|PMID:20404091), (MGI:5644240|PMID:25397698) RGD PMID:16325584, PMID:20404091, PMID:25397698 MGI:3612803, MGI:4819480, MGI:5644240 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:2176158 (MGI:3628724|PMID:16579983) RGD PMID:16579983 MGI:3628724 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr 7:59,526,105...59,617,307
Ensembl chr 7:59,527,124...59,587,385
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr 1:64,130,823...64,147,066
Ensembl chr 1:64,130,908...64,147,251
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Eomes eomesodermin ISO MGI:101893 (MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:3612803 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Foxd3 forkhead box D3 ISO MGI:2388719 (MGI:3604420|PMID:16039639) RGD PMID:16039639 MGI:3604420 NCBI chr 5:118,346,283...118,349,120 JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hopx HOP homeobox ISO (PMID:17576768)
MGI:2389233 (MGI:3722454|PMID:17576768)
RGD PMID:17576768 MGI:3722454 NCBI chr14:33,354,803...33,362,547
Ensembl chr14:33,354,807...33,362,551
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit IEA
ISO
GO_REF:0000107
MGI:2153821 (MGI:1332277|PMID:10022836), (MGI:2138058|PMID:11456449)
Ensembl
RGD
PMID:10022836, PMID:11456449 GO_REF:0000107, MGI:1332277, MGI:2138058 NCBI chr19:26,092,972...26,094,756
Ensembl chr19:26,092,974...26,094,756
JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:2138058 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO MGI:1201683 (MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:3612803 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Rbm46 RNA binding motif protein 46 ISO (MGI:5644240|PMID:25397698) RGD PMID:25397698 MGI:5644240 NCBI chr 2:181,828,931...181,874,223
Ensembl chr 2:181,831,244...181,874,223
JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G Srf serum response factor ISO (PMID:17576768) RGD PMID:17576768 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tfap2c transcription factor AP-2 gamma ISO MGI:3040993 (MGI:4819480|PMID:20404091) RGD PMID:20404091 MGI:4819480 NCBI chr 3:170,550,314...170,558,197
Ensembl chr 3:170,550,314...170,558,194
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO MGI:3056522|MGI:4819826 (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle2 prickle planar cell polarity protein 2 ISO MGI:4941925 (MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:5319591 NCBI chr 4:124,238,167...124,584,176
Ensembl chr 4:124,238,167...124,338,176
JBrowse link
G Tead4 TEA domain transcription factor 4 ISO MGI:106907 (MGI:3770613|PMID:18083014) RGD PMID:18083014 MGI:3770613 NCBI chr 4:161,542,566...161,619,848
Ensembl chr 4:161,540,130...161,587,222
JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 IEA
ISO
GO_REF:0000107
MGI:2651546 (MGI:1345775|PMID:10500095)
Ensembl
RGD
PMID:10500095 GO_REF:0000107, MGI:1345775 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Esrrb estrogen-related receptor beta ISO MGI:1857422 (MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:1095811 NCBI chr 6:110,360,940...110,458,406
Ensembl chr 6:110,410,141...110,455,906
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:1856970|MGI:2158730 (MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:2138058 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure formation involved in morphogenesis 1214
        blastocyst formation 59
          inner cell mass cell differentiation + 8
          trophectodermal cell differentiation + 26
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          embryo development 1307
            embryo development ending in birth or egg hatching 861
              chordate embryonic development 845
                in utero embryonic development 545
                  blastocyst development 157
                    blastocyst formation 59
                      inner cell mass cell differentiation + 8
                      trophectodermal cell differentiation + 26
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.