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ONTOLOGY REPORT - ANNOTATIONS


Term:inner cell mass cell differentiation
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Accession:GO:0001826 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of an inner cell mass cell.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, inner cell mass ; EMAP:14'.


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inner cell mass cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:1857856 (MGI:1346632|PMID:10518496) RGD PMID:10518496 MGI:1346632 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Nle1 notchless homolog 1 ISO MGI:3624778 (MGI:3623851|PMID:16611995) RGD PMID:16611995 MGI:3623851 NCBI chr10:70,250,959...70,261,880
Ensembl chr10:70,250,959...70,259,553
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO (MGI:3844762|PMID:19372391), (MGI:4822076|PMID:20639862), (MGI:4939073|PMID:21295276) RGD PMID:19372391, PMID:20639862, PMID:21295276 MGI:3844762, MGI:4822076, MGI:4939073 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
inner cell mass cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 ISO MGI:1354386 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr 1:1,784,078...1,817,310
Ensembl chr 1:1,784,078...1,817,310
JBrowse link
G Lats2 large tumor suppressor kinase 2 ISO MGI:1333883 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr15:37,943,609...37,995,175
Ensembl chr15:37,943,609...37,983,882
JBrowse link
G Prdm14 PR/SET domain 14 ISO (MGI:5528721|PMID:24183668) RGD PMID:24183668 MGI:5528721 NCBI chr 5:5,710,076...5,730,560
Ensembl chr 5:5,710,392...5,730,560
JBrowse link
inner cell mass cellular morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 ISO MGI:1354386 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr 1:1,784,078...1,817,310
Ensembl chr 1:1,784,078...1,817,310
JBrowse link
G Lats2 large tumor suppressor kinase 2 ISO MGI:1333883 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr15:37,943,609...37,995,175
Ensembl chr15:37,943,609...37,983,882
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:3717121 (MGI:4946462|PMID:21146513) RGD PMID:21146513 MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      cellular developmental process 4457
        cell differentiation 4362
          inner cell mass cell differentiation 8
            inner cell mass cell fate commitment 3
            inner cell mass cellular morphogenesis 3
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          embryo development 1307
            embryo development ending in birth or egg hatching 861
              chordate embryonic development 845
                in utero embryonic development 545
                  blastocyst development 157
                    blastocyst formation 59
                      inner cell mass cell differentiation 8
                        inner cell mass cell fate commitment 3
                        inner cell mass cellular morphogenesis 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.