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ONTOLOGY REPORT - ANNOTATIONS


Term:blastocyst growth
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Accession:GO:0001832 term browser browse the term
Definition:An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, blastocoelic cavity ; EMAP:17', 'TS5, blastocoelic cavity ; EMAP:27' and 'TS6, blastocoelic cavity ; EMAP:36'.


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blastocyst growth term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO MGI:MGI:101893 (MGI:MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Ints1 integrator complex subunit 1 ISO MGI:MGI:3663683 (MGI:MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:MGI:3722560 NCBI chr12:16,950,704...16,974,896 JBrowse link
G Nbn nibrin IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:2680772|PMID:14612522)
Ensembl
UniProt
RGD
PMID:14612522 GO_REF:0000024, GO_REF:0000107, MGI:MGI:2680772 NCBI chr 5:29,622,347...29,656,877
Ensembl chr 5:29,622,281...29,656,864
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO MGI:MGI:109345 (MGI:MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:MGI:5528755 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Rad51b RAD51 paralog B ISO MGI:MGI:3621480 (MGI:MGI:1349263|PMID:10567591) RGD PMID:10567591 MGI:MGI:1349263 NCBI chr 6:102,473,978...103,018,185
Ensembl chr 6:102,477,036...102,512,505
JBrowse link
G Rln1 relaxin 1 ISO (PMID:21272344) RGD PMID:21272344 NCBI chr 1:247,483,298...247,486,331
Ensembl chr 1:247,483,302...247,486,202
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO (MGI:MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:MGI:5528755 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:MGI:2386105 (MGI:MGI:1929360|PMID:11163203) RGD PMID:11163203 MGI:MGI:1929360 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Ubtfl1 upstream binding transcription factor like 1 ISO (MGI:MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:MGI:4414743
G Ubtfl6-p1 UBTF like 6, pseudogene 1 ISO (MGI:MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:MGI:4414743 NCBI chr 8:17,525,070...17,530,404 JBrowse link
G Zfp830 zinc finger protein 830 ISO MGI:MGI:3583779 (MGI:MGI:3582017|PMID:15988037) RGD PMID:15988037 MGI:MGI:3582017 NCBI chr10:70,118,250...70,119,714
Ensembl chr10:70,118,250...70,119,716
JBrowse link
inner cell mass cell proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated ISO
IEA
MGI:MGI:1930617 (MGI:MGI:707943|PMID:9171369)
GO_REF:0000107
RGD
Ensembl
PMID:9171369 GO_REF:0000107, MGI:MGI:707943 NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
JBrowse link
G Brd4 bromodomain containing 4 ISO MGI:MGI:2674141 (MGI:MGI:2179909|PMID:11997514) RGD PMID:11997514 MGI:MGI:2179909 NCBI chr 7:14,222,101...14,303,055
Ensembl chr 7:14,222,101...14,303,055
JBrowse link
G Chek1 checkpoint kinase 1 ISO MGI:MGI:1928818 (MGI:MGI:1860048|PMID:10859163) RGD PMID:10859163 MGI:MGI:1860048 NCBI chr 8:39,181,162...39,201,588
Ensembl chr 8:39,181,163...39,243,882
JBrowse link
G Cops2 COP9 signalosome subunit 2 ISO MGI:MGI:2678281 (MGI:MGI:2676528|PMID:12972599) RGD PMID:12972599 MGI:MGI:2676528 NCBI chr 3:118,109,394...118,137,125
Ensembl chr 3:118,109,406...118,137,191
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 ISO (MGI:MGI:3057099|PMID:15452149) RGD PMID:15452149 MGI:MGI:3057099 NCBI chr 1:201,620,642...201,689,905
NCBI chr 1:203,149,414...203,228,705
JBrowse link
G Gins1 GINS complex subunit 1 ISO MGI:MGI:3706309 (MGI:MGI:3703396|PMID:16287864) RGD PMID:16287864 MGI:MGI:3703396 NCBI chr 3:146,695,366...146,716,787
Ensembl chr 3:146,695,344...146,716,816
JBrowse link
G Gins4 GINS complex subunit 4 ISO
IEA
MGI:MGI:5575557 (MGI:MGI:5568335|PMID:24244394)
GO_REF:0000107
RGD
Ensembl
PMID:24244394 GO_REF:0000107, MGI:MGI:5568335 NCBI chr16:73,584,412...73,596,808
Ensembl chr16:73,584,521...73,596,793
JBrowse link
G Ints1 integrator complex subunit 1 ISO MGI:MGI:3663683 (MGI:MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:MGI:3722560 NCBI chr12:16,950,704...16,974,896 JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 ISO MGI:MGI:3039486 (MGI:MGI:3027420|PMID:14729962) RGD PMID:14729962 MGI:MGI:3027420 NCBI chr 6:144,291,313...144,362,454
Ensembl chr 6:144,291,974...144,363,947
JBrowse link
G Ndel1 nudE neurodevelopment protein 1-like 1 ISO MGI:MGI:3589467 (MGI:MGI:3588829|PMID:16107726) RGD PMID:16107726 MGI:MGI:3588829 NCBI chr10:55,398,919...55,456,654
Ensembl chr10:55,411,901...55,444,861
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO MGI:MGI:3801303 (MGI:MGI:4459579|PMID:20484223) RGD PMID:20484223 MGI:MGI:4459579 NCBI chr 1:192,064,586...192,088,547
Ensembl chr 1:192,064,589...192,088,520
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor ISO MGI:MGI:2450933 (MGI:MGI:2450001|PMID:12556505) RGD PMID:12556505 MGI:MGI:2450001 NCBI chr 2:47,266,758...47,268,526
Ensembl chr 2:47,266,738...47,268,625
JBrowse link
G Prpf19 pre-mRNA processing factor 19 ISO MGI:MGI:3711357 (MGI:MGI:3709933|PMID:17283042) RGD PMID:17283042 MGI:MGI:3709933 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Sall4 spalt-like transcription factor 4 ISO MGI:MGI:3699175 (MGI:MGI:3698636|PMID:16790473) RGD PMID:16790473 MGI:MGI:3698636 NCBI chr 3:165,520,155...165,538,176
Ensembl chr 3:165,520,392...165,537,940
JBrowse link
G Sbds SBDS, ribosome maturation factor ISO MGI:MGI:3664792 (MGI:MGI:3655752|PMID:16914746) RGD PMID:16914746 MGI:MGI:3655752 NCBI chr12:29,921,443...29,930,602
Ensembl chr12:29,921,443...29,930,600
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO MGI:MGI:3040431 (MGI:MGI:3038026|PMID:14993285) RGD PMID:14993285 MGI:MGI:3038026 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 ISO MGI:MGI:3033758 (MGI:MGI:1926844|PMID:11076765) RGD PMID:11076765 MGI:MGI:1926844 NCBI chr 9:15,513,048...15,532,992
Ensembl chr 9:15,513,063...15,529,800
JBrowse link
G Zpr1 ZPR1 zinc finger ISO (MGI:MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:MGI:3575865 NCBI chr 8:50,563,047...50,572,621
Ensembl chr 8:50,563,047...50,572,621
JBrowse link
positive regulation of trophectodermal cell proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf2 colony stimulating factor 2 ISO (PMID:16792532), (PMID:24520418) RGD PMID:16792532, PMID:24520418 NCBI chr10:39,602,089...39,604,070
Ensembl chr10:39,602,089...39,604,070
JBrowse link
G Igf1 insulin-like growth factor 1 ISO
IEA
(PMID:24508636)
GO_REF:0000107
RGD
Ensembl
PMID:24508636 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
trophectodermal cell proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C ISO
IEA
(PMID:15150278)
GO_REF:0000107
RGD
Ensembl
PMID:15150278 GO_REF:0000107 NCBI chr 3:44,272,859...44,342,501
Ensembl chr 3:44,270,653...44,342,355
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (MGI:MGI:4829413|PMID:20708584) RGD PMID:20708584 MGI:MGI:4829413 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Esrrb estrogen-related receptor beta ISO MGI:MGI:1857422 (MGI:MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:MGI:1095811 NCBI chr 6:110,360,940...110,458,406
Ensembl chr 6:110,410,141...110,455,906
JBrowse link
G Zpr1 ZPR1 zinc finger ISO (MGI:MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:MGI:3575865 NCBI chr 8:50,563,047...50,572,621
Ensembl chr 8:50,563,047...50,572,621
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      developmental growth 819
        blastocyst growth 33
          inner cell mass cell proliferation 18
          trophectodermal cell proliferation + 6
Path 2
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          embryo development 1307
            embryo development ending in birth or egg hatching 861
              chordate embryonic development 845
                in utero embryonic development 545
                  blastocyst development 157
                    blastocyst growth 33
                      inner cell mass cell proliferation 18
                      trophectodermal cell proliferation + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.