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ONTOLOGY REPORT - ANNOTATIONS


Term:lymph vessel development
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Accession:GO:0001945 term browser browse the term
Definition:The process whose specific outcome is the progression of a lymph vessel over time, from its formation to the mature structure.


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lymph vessel development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccbe1 collagen and calcium binding EGF domains 1 ISO MGI:MGI:5495674 (MGI:MGI:5582954|PMID:24733830) RGD PMID:24733830 MGI:MGI:5582954 NCBI chr18:61,758,754...62,013,194
Ensembl chr18:61,759,289...61,788,863
JBrowse link
G Efnb2 ephrin B2 ISO MGI:MGI:3573787 (MGI:MGI:3527923|PMID:15687262) RGD PMID:15687262 MGI:MGI:3527923 NCBI chr16:86,631,151...86,672,050
Ensembl chr16:86,631,064...86,675,049
JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 ISO MGI:MGI:3039635 (MGI:MGI:4436974|PMID:19903896), (MGI:MGI:4443218|PMID:20439428) RGD PMID:19903896, PMID:20439428 MGI:MGI:4436974, MGI:MGI:4443218 NCBI chr10:35,078,782...35,120,296
Ensembl chr10:35,078,726...35,121,599
JBrowse link
G Foxc1 forkhead box C1 ISO MGI:MGI:1347481 (MGI:MGI:3701373|PMID:16678147) RGD PMID:16678147 MGI:MGI:3701373 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:MGI:1347466 (MGI:MGI:3701373|PMID:16678147) RGD PMID:16678147 MGI:MGI:3701373 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Heg1 heart development protein with EGF-like domains 1 ISO MGI:MGI:3838392 (MGI:MGI:3837878|PMID:19151727) RGD PMID:19151727 MGI:MGI:3837878 NCBI chr11:70,234,248...70,322,966
Ensembl chr11:70,236,888...70,322,690
JBrowse link
G Kdr kinase insert domain receptor ISO MGI:MGI:3039635 (MGI:MGI:4443218|PMID:20439428) RGD PMID:20439428 MGI:MGI:4443218 NCBI chr14:34,727,677...34,787,127
Ensembl chr14:34,727,623...34,787,183
JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 ISO (PMID:19210544) RGD PMID:19210544 NCBI chr 1:131,447,671...131,465,749
Ensembl chr 1:131,448,447...131,460,473
JBrowse link
G Prox1 prospero homeobox 1 ISO MGI:MGI:2450311|MGI:MGI:3609548 (MGI:MGI:3607876|PMID:16170315) RGD PMID:16170315 MGI:MGI:3607876 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Sox18 SRY-box transcription factor 18 ISO MGI:MGI:1856135|MGI:MGI:2178809 (MGI:MGI:3850578|PMID:19515696), (MGI:MGI:54697|PMID:291594) RGD PMID:291594, PMID:19515696 MGI:MGI:3850578, MGI:MGI:54697 NCBI chr 3:177,177,237...177,179,039
Ensembl chr 3:177,177,310...177,179,127
JBrowse link
G Svep1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 ISO MGI:MGI:5286317 (MGI:MGI:5913245|PMID:28179432) RGD PMID:28179432 MGI:MGI:5913245 NCBI chr 5:75,147,245...75,320,873
Ensembl chr 5:75,143,867...75,319,765
JBrowse link
G Syk spleen associated tyrosine kinase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3653293|PMID:12522250)
Ensembl
UniProt
RGD
PMID:12522250 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3653293 NCBI chr17:12,614,311...12,669,568
Ensembl chr17:12,614,311...12,669,573
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
MGI:MGI:2450311|MGI:MGI:3046793 (MGI:MGI:4452526|PMID:20439995)
GO_REF:0000024
RGD
UniProt
PMID:20439995 GO_REF:0000024, MGI:MGI:4452526 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tmem204 transmembrane protein 204 ISO
IBA
MGI:MGI:95561|MGI:MGI:96683 (MGI:MGI:4443218|PMID:20439428)
PMID:21873635
RGD PMID:20439428, PMID:21873635 MGI:MGI:4443218, RGD:13792537 NCBI chr10:14,417,608...14,446,272
Ensembl chr10:14,417,609...14,443,010
JBrowse link
branching involved in lymph vessel morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfatc1 nuclear factor of activated T-cells 1 ISO MGI:MGI:2181762 (MGI:MGI:3848105|PMID:19233265) RGD PMID:19233265 MGI:MGI:3848105 NCBI chr18:77,203,517...77,322,690
Ensembl chr18:77,203,525...77,322,690
JBrowse link
lymph vessel morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1 polycystin 1, transient receptor potential channel interacting ISO MGI:MGI:3612341 (MGI:MGI:5576424|PMID:24767999) RGD PMID:24767999 MGI:MGI:5576424 NCBI chr10:13,914,057...13,962,008
Ensembl chr10:13,915,214...13,962,008
JBrowse link
G Svep1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 IEA
ISO
GO_REF:0000107
MGI:MGI:5286317|MGI:MGI:6188639 (MGI:MGI:5913245|PMID:28179432), (MGI:MGI:6156694|PMID:28179430)
Ensembl
RGD
PMID:28179430, PMID:28179432 GO_REF:0000107, MGI:MGI:5913245, MGI:MGI:6156694 NCBI chr 5:75,147,245...75,320,873
Ensembl chr 5:75,143,867...75,319,765
JBrowse link
G Vegfa vascular endothelial growth factor A ISO (MGI:MGI:4461879|PMID:18093989) RGD PMID:18093989 MGI:MGI:4461879 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
lymphangiogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B ISO
IEA
(MGI:MGI:4436974|PMID:19903896)
GO_REF:0000107
RGD
Ensembl
PMID:19903896 GO_REF:0000107, MGI:MGI:4436974 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Acvrl1 activin A receptor like type 1 ISO (MGI:MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:MGI:4436974 NCBI chr 7:142,769,942...142,787,336
Ensembl chr 7:142,776,252...142,787,335
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (MGI:MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:MGI:4436974 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Ccbe1 collagen and calcium binding EGF domains 1 ISO
IEA
MGI:MGI:5007046 (MGI:MGI:5432672|PMID:21778431)
GO_REF:0000107
(PMID:19935664)
RGD
Ensembl
PMID:19935664, PMID:21778431 GO_REF:0000107, MGI:MGI:5432672 NCBI chr18:61,758,754...62,013,194
Ensembl chr18:61,759,289...61,788,863
JBrowse link
G Clec14a C-type lectin domain containing 14A ISO MGI:MGI:6404416 (MGI:MGI:5881854|PMID:27991863) RGD PMID:27991863 MGI:MGI:5881854 NCBI chr 6:79,303,301...79,306,443
Ensembl chr 6:79,303,304...79,306,443
JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5294901|PMID:20697430)
(PMID:19779139)
Ensembl
UniProt
RGD
PMID:19779139, PMID:20697430 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5294901 NCBI chr10:35,078,782...35,120,296
Ensembl chr10:35,078,726...35,121,599
JBrowse link
G Foxc2 forkhead box C2 ISO (PMID:12114478) RGD PMID:12114478 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 ISO MGI:MGI:103178|MGI:MGI:107163 (MGI:MGI:3848105|PMID:19233265) RGD PMID:19233265 MGI:MGI:3848105 NCBI chr18:77,203,517...77,322,690
Ensembl chr18:77,203,525...77,322,690
JBrowse link
G Pdpn podoplanin ISO
ISS
MGI:MGI:2657021 (MGI:MGI:3522394|PMID:12853470)
GO_REF:0000024
RGD
UniProt
PMID:12853470 GO_REF:0000024, MGI:MGI:3522394 NCBI chr 5:161,947,137...161,981,441
Ensembl chr 5:161,947,137...161,981,441
JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta ISO
IEA
MGI:MGI:102469|MGI:MGI:103178 (MGI:MGI:3848104|PMID:19233846)
GO_REF:0000107
RGD
Ensembl
PMID:19233846 GO_REF:0000107, MGI:MGI:3848104 NCBI chr15:4,209,702...4,236,895
Ensembl chr15:4,209,703...4,236,895
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:12412020) RGD PMID:12412020 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Ptpn14 protein tyrosine phosphatase, non-receptor type 14 ISO
IBA
(PMID:20826270)
PMID:21873635
(MGI:MGI:4939987|PMID:20826270)
RGD PMID:20826270, PMID:21873635 MGI:MGI:4939987, RGD:13792537 NCBI chr13:108,689,916...108,841,593
Ensembl chr13:108,696,336...108,841,511
JBrowse link
G Sox18 SRY-box transcription factor 18 ISO
IBA
MGI:MGI:2178809 (MGI:MGI:3828192|PMID:18931657)
PMID:21873635
(PMID:12740761)
RGD PMID:12740761, PMID:18931657, PMID:21873635 MGI:MGI:3828192, RGD:13792537 NCBI chr 3:177,177,237...177,179,039
Ensembl chr 3:177,177,310...177,179,127
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:102469|MGI:MGI:107163 (MGI:MGI:3848105|PMID:19233265) RGD PMID:19233265 MGI:MGI:3848105 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
lymphatic endothelial cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B ISO
IEA
(MGI:MGI:4436974|PMID:19903896)
GO_REF:0000107
RGD
Ensembl
PMID:19903896 GO_REF:0000107, MGI:MGI:4436974 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Acvrl1 activin A receptor like type 1 ISO (PMID:19903896)
(MGI:MGI:4436974|PMID:19903896)
RGD PMID:19903896 MGI:MGI:4436974 NCBI chr 7:142,769,942...142,787,336
Ensembl chr 7:142,776,252...142,787,335
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (MGI:MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:MGI:4436974 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:12198161)
MGI:MGI:2182767|MGI:MGI:3609548 (MGI:MGI:3820329|PMID:19056883)
RGD PMID:12198161, PMID:19056883 MGI:MGI:3820329 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Sox18 SRY-box transcription factor 18 ISO MGI:MGI:2178809 (MGI:MGI:3828192|PMID:18931657) RGD PMID:18931657 MGI:MGI:3828192 NCBI chr 3:177,177,237...177,179,039
Ensembl chr 3:177,177,310...177,179,127
JBrowse link
lymphatic endothelial cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdpn podoplanin ISO
ISS
(MGI:MGI:4453945|PMID:20110424)
GO_REF:0000024
RGD
UniProt
PMID:20110424 GO_REF:0000024, MGI:MGI:4453945 NCBI chr 5:161,947,137...161,981,441
Ensembl chr 5:161,947,137...161,981,441
JBrowse link
lymphatic endothelial cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lgals12 galectin 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,891,626...222,903,728
Ensembl chr 1:222,891,626...222,902,320
JBrowse link
G Lgals8 galectin 8 ISO
ISS
IEA
IBA
(PMID:19268462)
GO_REF:0000024
GO_REF:0000107
PMID:21873635
RGD
UniProt
Ensembl
PMID:19268462, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr17:66,487,451...66,515,316
Ensembl chr17:66,487,457...66,511,870
JBrowse link
negative regulation of lymphangiogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epha2 Eph receptor A2 ISO MGI:MGI:3040415 (MGI:MGI:3847147|PMID:19443703) RGD PMID:19443703 MGI:MGI:3847147 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
G Foxc1 forkhead box C1 ISO (MGI:MGI:5314489|PMID:22171010) RGD PMID:22171010 MGI:MGI:5314489 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Vash1 vasohibin 1 ISO UniProtKB:P97953|UniProtKB:Q00731 (PMID:20133819) RGD PMID:20133819 NCBI chr 6:110,624,377...110,640,942
Ensembl chr 6:110,624,856...110,637,382
JBrowse link
positive regulation of lymphangiogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccbe1 collagen and calcium binding EGF domains 1 ISO (MGI:MGI:5568630|PMID:24552833) RGD PMID:24552833 MGI:MGI:5568630 NCBI chr18:61,758,754...62,013,194
Ensembl chr18:61,759,289...61,788,863
JBrowse link
G Vegfa vascular endothelial growth factor A ISO (MGI:MGI:4439256|PMID:20133819) RGD PMID:20133819 MGI:MGI:4439256 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Vegfc vascular endothelial growth factor C ISO (MGI:MGI:4439256|PMID:20133819), (MGI:MGI:5568630|PMID:24552833) RGD PMID:20133819, PMID:24552833 MGI:MGI:4439256, MGI:MGI:5568630 NCBI chr16:40,440,371...40,555,178
Ensembl chr16:40,440,207...40,555,576
JBrowse link
regulation of transcription involved in lymphatic endothelial cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 ISO (PMID:18815287) RGD PMID:18815287 NCBI chr 1:131,447,671...131,465,749
Ensembl chr 1:131,448,447...131,460,473
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:18815287) RGD PMID:18815287 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        lymph vessel development 29
          lymph vessel morphogenesis + 22
          lymphatic endothelial cell differentiation + 7
          venous endothelial cell migration involved in lymph vessel development 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            circulatory system development 1224
              vasculature development 772
                lymph vessel development 29
                  lymph vessel morphogenesis + 22
                  lymphatic endothelial cell differentiation + 7
                  venous endothelial cell migration involved in lymph vessel development 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.