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ONTOLOGY REPORT - ANNOTATIONS


Term:columnar/cuboidal epithelial cell development
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Accession:GO:0002066 term browser browse the term
Definition:The process whose specific outcome is the progression of a columnar/cuboidal epithelial cell over time, from its formation to the mature structure. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.


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columnar/cuboidal epithelial cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ros1 ROS proto-oncogene 1 , receptor tyrosine kinase ISO
ISS
(MGI:MGI:80739|PMID:8675006)
GO_REF:0000024
RGD
UniProt
PMID:8675006 GO_REF:0000024, MGI:MGI:80739 NCBI chr20:33,100,190...33,323,544
Ensembl chr20:33,100,191...33,323,367
JBrowse link
G Shroom3 shroom family member 3 ISO (MGI:MGI:3610718|PMID:16249236) RGD PMID:16249236 MGI:MGI:3610718 NCBI chr14:16,622,767...16,903,265
Ensembl chr14:16,622,760...16,903,242
JBrowse link
auditory receptor cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg10 ALG10, alpha-1,2-glucosyltransferase ISO MGI:MGI:2671810 (MGI:MGI:5568671|PMID:24303013) RGD PMID:24303013 MGI:MGI:5568671 NCBI chr 7:131,330,913...131,336,183
Ensembl chr 7:131,330,913...131,336,183
JBrowse link
G Clrn1 clarin 1 ISO MGI:MGI:3850171 (MGI:MGI:3849925|PMID:19414487) RGD PMID:19414487 MGI:MGI:3849925 NCBI chr 2:149,049,925...149,088,787
Ensembl chr 2:149,049,925...149,088,787
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO
IEA
MGI:MGI:3574787 (MGI:MGI:3527944|PMID:15630379)
GO_REF:0000107
RGD
Ensembl
PMID:15630379 GO_REF:0000107, MGI:MGI:3527944 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Lrtomt leucine rich transmembrane and O-methyltransferase domain containing ISO (MGI:MGI:3799635|PMID:18794526) RGD PMID:18794526 MGI:MGI:3799635 NCBI chr 1:166,985,468...166,989,681
Ensembl chr 1:166,986,013...166,988,062
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 ISO (MGI:MGI:5477842|PMID:23533177) RGD PMID:23533177 MGI:MGI:5477842 NCBI chr10:61,456,144...61,577,412
Ensembl chr10:61,456,145...61,577,412
JBrowse link
G Pdzd7 PDZ domain containing 7 ISO MGI:MGI:4433578 (MGI:MGI:5565635|PMID:24334608) RGD PMID:24334608 MGI:MGI:5565635 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO
IBA
MGI:MGI:2682641 (MGI:MGI:2680888|PMID:12808454)
PMID:21873635
RGD PMID:12808454, PMID:21873635 MGI:MGI:2680888, RGD:13792537 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
G Tmc1 transmembrane channel-like 1 ISO MGI:MGI:5427097 (MGI:MGI:5320864|PMID:22105175) RGD PMID:22105175 MGI:MGI:5320864 NCBI chr 1:238,336,919...238,525,792
Ensembl chr 1:238,336,919...238,441,500
JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 ISO MGI:MGI:4354110 (MGI:MGI:4353582|PMID:19363478) RGD PMID:19363478 MGI:MGI:4353582 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:MGI:2663662|MGI:MGI:2663669 (MGI:MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:MGI:2139764 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:MGI:2145950|MGI:MGI:4440621 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:MGI:4417931 (MGI:MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:MGI:4413621 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO
IEA
MGI:MGI:5558098 (MGI:MGI:5544506|PMID:24302887)
GO_REF:0000107
RGD
Ensembl
PMID:24302887 GO_REF:0000107, MGI:MGI:5544506 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:MGI:1856799 (MGI:MGI:3709803|PMID:11875276) RGD PMID:11875276 MGI:MGI:3709803 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Cdh23 cadherin-related 23 ISO MGI:MGI:1856228|MGI:MGI:1856681|MGI:MGI:1891428|MGI:MGI:2154548|MGI:MGI:2154549 (MGI:MGI:1929001|PMID:11138008), (MGI:MGI:1933915|PMID:11322776), (MGI:MGI:3526751|PMID:15537665), (MGI:MGI:3625226|PMID:12121736), (MGI:MGI:3686545|PMID:17050716), (MGI:MGI:5468200|PMID:23217710), (MGI:MGI:75953|PMID:7610888), (MGI:MGI:81497|PMID:8790740), (MGI:MGI:86134|PMID:9039475) RGD PMID:7610888, PMID:8790740, PMID:9039475, PMID:11138008, PMID:11322776, PMID:12121736, PMID:15537665, PMID:17050716, PMID:23217710 MGI:MGI:1929001, MGI:MGI:1933915, MGI:MGI:3526751, MGI:MGI:3625226, MGI:MGI:3686545, MGI:MGI:5468200, MGI:MGI:75953, MGI:MGI:81497, MGI:MGI:86134 NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111
JBrowse link
G Clic5 chloride intracellular channel 5 ISO
IBA
MGI:MGI:3663254 (MGI:MGI:3663248|PMID:17021174)
PMID:21873635
RGD PMID:17021174, PMID:21873635 MGI:MGI:3663248, RGD:13792537 NCBI chr 9:19,121,676...19,372,673
Ensembl chr 9:19,121,677...19,372,673
JBrowse link
G Clrn1 clarin 1 IEA
ISO
GO_REF:0000107
MGI:MGI:3850171 (MGI:MGI:3849925|PMID:19414487), (MGI:MGI:4353469|PMID:19423712)
Ensembl
RGD
PMID:19414487, PMID:19423712 GO_REF:0000107, MGI:MGI:3849925, MGI:MGI:4353469 NCBI chr 2:149,049,925...149,088,787
Ensembl chr 2:149,049,925...149,088,787
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 ISO MGI:MGI:2139535|MGI:MGI:6281113|MGI:MGI:6281114 (MGI:MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:MGI:6278501 NCBI chr18:36,308,925...36,334,643
Ensembl chr18:36,308,925...36,322,320
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 ISO MGI:MGI:3055797|MGI:MGI:3718054 (MGI:MGI:3578102|PMID:15905332), (MGI:MGI:3759710|PMID:17876667), (MGI:MGI:5468200|PMID:23217710) RGD PMID:15905332, PMID:17876667, PMID:23217710 MGI:MGI:3578102, MGI:MGI:3759710, MGI:MGI:5468200 NCBI chr20:5,815,837...5,826,137
Ensembl chr20:5,815,837...5,826,137
JBrowse link
G Myo3a myosin IIIA ISO MGI:MGI:2448580 (MGI:MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:MGI:5766107 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo3b myosin IIIB ISO MGI:MGI:2183924 (MGI:MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:MGI:5766107 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
JBrowse link
G Myo7a myosin VIIA ISO MGI:MGI:1860092|MGI:MGI:2155422 (MGI:MGI:2156358|PMID:11753415), (MGI:MGI:3625226|PMID:12121736), (MGI:MGI:3686545|PMID:17050716) RGD PMID:11753415, PMID:12121736, PMID:17050716 MGI:MGI:2156358, MGI:MGI:3625226, MGI:MGI:3686545 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Pcdh15 protocadherin related 15 ISO MGI:MGI:1855958|MGI:MGI:1856394|MGI:MGI:1856396|MGI:MGI:1890219|MGI:MGI:2151877|MGI:MGI:3505691 (MGI:MGI:1928787|PMID:10978835), (MGI:MGI:3526751|PMID:15537665), (MGI:MGI:3619110|PMID:11124469), (MGI:MGI:3654702|PMID:16887306), (MGI:MGI:5468200|PMID:23217710) RGD PMID:10978835, PMID:11124469, PMID:15537665, PMID:16887306, PMID:23217710 MGI:MGI:1928787, MGI:MGI:3526751, MGI:MGI:3619110, MGI:MGI:3654702, MGI:MGI:5468200 NCBI chr20:14,952,213...15,334,745
Ensembl chr20:14,952,213...15,334,745
JBrowse link
G Pdzd7 PDZ domain containing 7 ISO
IBA
MGI:MGI:4433578 (MGI:MGI:5565635|PMID:24334608)
PMID:21873635
RGD PMID:24334608, PMID:21873635 MGI:MGI:5565635, RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G Pls1 plastin 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5608770|PMID:25124451)
Ensembl
RGD
PMID:25124451 GO_REF:0000107, MGI:MGI:5608770 NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913
JBrowse link
G Rest RE1-silencing transcription factor ISS
ISO
GO_REF:0000024
(MGI:MGI:6193260|PMID:29961578)
UniProt
RGD
PMID:29961578 GO_REF:0000024, MGI:MGI:6193260 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 ISO (MGI:MGI:5789047|PMID:27269051) RGD PMID:27269051 MGI:MGI:5789047 NCBI chr17:42,324,594...42,549,907
Ensembl chr17:42,324,594...42,422,053
JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:MGI:2139764 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:MGI:2145950|MGI:MGI:4440621 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Slc9a3r1 SLC9A3 regulator 1 ISO MGI:MGI:3526430 (MGI:MGI:5578076|PMID:24920589) RGD PMID:24920589 MGI:MGI:5578076 NCBI chr10:103,713,045...103,730,145
Ensembl chr10:103,713,045...103,730,145
JBrowse link
G Sod1 superoxide dismutase 1 ISS
ISO
GO_REF:0000024
MGI:MGI:1857872 (MGI:MGI:1344578|PMID:10466888), (MGI:MGI:3700629|PMID:10464373)
UniProt
RGD
PMID:10464373, PMID:10466888 GO_REF:0000024, MGI:MGI:1344578, MGI:MGI:3700629 NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
JBrowse link
G Strc stereocilin ISO MGI:MGI:3818633 (MGI:MGI:3818235|PMID:18849963), (MGI:MGI:5430850|PMID:21165971) RGD PMID:18849963, PMID:21165971 MGI:MGI:3818235, MGI:MGI:5430850 NCBI chr 3:113,324,403...113,343,513
Ensembl chr 3:113,324,698...113,342,675
JBrowse link
G Tprn taperin ISO MGI:MGI:2685697 (MGI:MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:MGI:6278501 NCBI chr 3:2,480,232...2,487,710
Ensembl chr 3:2,480,232...2,487,710
JBrowse link
G Triobp TRIO and F-actin binding protein ISO MGI:MGI:4881773 (MGI:MGI:4881391|PMID:20510926) RGD PMID:20510926 MGI:MGI:4881391 NCBI chr 7:120,173,892...120,237,145
Ensembl chr 7:120,176,530...120,230,420
JBrowse link
G Whrn whirlin ISO
IBA
IEA
MGI:MGI:4432119 (MGI:MGI:5796227|PMID:27117407)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:27117407, PMID:21873635 GO_REF:0000107, MGI:MGI:5796227, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
glandular epithelial cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fasn fatty acid synthase ISO MGI:MGI:3765070 (MGI:MGI:5630041|PMID:25565205) RGD PMID:25565205 MGI:MGI:5630041 NCBI chr10:109,987,735...110,005,901
Ensembl chr10:109,987,735...110,005,901
JBrowse link
G Rara retinoic acid receptor, alpha ISO MGI:MGI:97858 (MGI:MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:MGI:69060 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:MGI:97858 (MGI:MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:MGI:69060 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:97856|MGI:MGI:97857 (MGI:MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:MGI:69060 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
glandular epithelial cell maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpat4 glycerol-3-phosphate acyltransferase 4 ISO MGI:MGI:3624276 (MGI:MGI:3623167|PMID:16449762) RGD PMID:16449762 MGI:MGI:3623167 NCBI chr16:73,615,949...73,649,769
Ensembl chr16:73,615,949...73,649,767
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 ISO
IEA
MGI:MGI:3714051 (MGI:MGI:5002772|PMID:21383503)
GO_REF:0000107
RGD
Ensembl
PMID:21383503 GO_REF:0000107, MGI:MGI:5002772 NCBI chr 4:33,890,353...33,943,219
Ensembl chr 4:33,890,349...33,943,211
JBrowse link
G Cdh1 cadherin 1 ISO (MGI:MGI:5449145|PMID:22766025) RGD PMID:22766025 MGI:MGI:5449145 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:108015 (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Il6st interleukin 6 signal transducer ISO
IEA
(PMID:25731159)
GO_REF:0000107
(MGI:MGI:5629863|PMID:25731159)
RGD
Ensembl
PMID:25731159 GO_REF:0000107, MGI:MGI:5629863 NCBI chr 2:44,279,199...44,319,427
Ensembl chr 2:44,289,393...44,314,944
JBrowse link
G Klf5 Kruppel-like factor 5 ISO MGI:MGI:3806635 (MGI:MGI:5471906|PMID:23266329) RGD PMID:23266329 MGI:MGI:5471906 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Mir3545 microRNA 3545 ISO (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr 6:136,704,947...136,705,061
Ensembl chr 6:136,704,947...136,705,061
JBrowse link
G Mir7-1 microRNA 7-1 ISO (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr17:6,675,016...6,675,112
Ensembl chr17:6,675,016...6,675,112
JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:MGI:2177178 (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Prdm1 PR/SET domain 1 ISO MGI:MGI:3605483|MGI:MGI:3605621 (MGI:MGI:5014435|PMID:21670299) RGD PMID:21670299 MGI:MGI:5014435 NCBI chr20:49,464,921...49,556,623
Ensembl chr20:49,464,919...49,556,518
JBrowse link
G Spdef SAM pointed domain containing ets transcription factor ISO MGI:MGI:4410321 (MGI:MGI:4410300|PMID:19549527) RGD PMID:19549527 MGI:MGI:4410300 NCBI chr20:7,292,823...7,308,053
Ensembl chr20:7,292,824...7,307,284
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO
IEA
(PMID:25731159)
GO_REF:0000107
(MGI:MGI:5629863|PMID:25731159)
RGD
Ensembl
PMID:25731159 GO_REF:0000107, MGI:MGI:5629863 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase ISO MGI:MGI:4391656 (MGI:MGI:5498602|PMID:23726973) RGD PMID:23726973 MGI:MGI:5498602 NCBI chr 4:159,635,145...159,654,108
Ensembl chr 4:159,635,153...159,654,063
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO
IEA
(PMID:25731159)
GO_REF:0000107
(MGI:MGI:5629863|PMID:25731159)
RGD
Ensembl
PMID:25731159 GO_REF:0000107, MGI:MGI:5629863 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
G Yipf6 Yip1 domain family, member 6 ISO MGI:MGI:4839074 (MGI:MGI:5437477|PMID:22802641) RGD PMID:22802641 MGI:MGI:5437477 NCBI chr  X:68,625,760...68,637,780
Ensembl chr  X:68,626,185...68,637,416
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A IEP RGD PMID:20466941 RGD:8662316 NCBI chr20:6,348,422...6,358,864
Ensembl chr20:6,351,458...6,358,864
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA
MGI:MGI:2384429 (MGI:MGI:4830408|PMID:20808783)
GO_REF:0000107
RGD
Ensembl
PMID:20808783 GO_REF:0000107, MGI:MGI:4830408 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:MGI:2150397 (MGI:MGI:1349338|PMID:10564089) RGD PMID:10564089 MGI:MGI:1349338
G Tyms thymidylate synthetase IEP RGD PMID:1260861 RGD:2317427 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
negative regulation of type B pancreatic cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr CF transmembrane conductance regulator IMP RGD PMID:23178930 RGD:11567224 NCBI chr 4:42,693,263...42,860,679
Ensembl chr 4:42,692,836...42,860,676
JBrowse link
pancreatic A cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 ISO
IEA
IMP
(PMID:20592023)
GO_REF:0000107
(MGI:MGI:4943812|PMID:20592023)
RGD
Ensembl
PMID:20592023, PMID:20592023 GO_REF:0000107, MGI:MGI:4943812, RGD:8552352 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
positive regulation of type B pancreatic cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bad BCL2-associated agonist of cell death ISO
ISS
(MGI:MGI:3778846|PMID:18223655)
GO_REF:0000024
RGD
UniProt
PMID:18223655 GO_REF:0000024, MGI:MGI:3778846 NCBI chr 1:222,198,516...222,207,459
Ensembl chr 1:222,198,534...222,207,453
JBrowse link
G Rfx3 regulatory factor X3 ISO (MGI:MGI:4941444|PMID:20413507) RGD PMID:20413507 MGI:MGI:4941444 NCBI chr 1:245,853,332...246,110,648
Ensembl chr 1:245,859,633...246,110,218
JBrowse link
regulation of type B pancreatic cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arntl aryl hydrocarbon receptor nuclear translocator-like IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4819446|PMID:20562852)
Ensembl
UniProt
RGD
PMID:20562852 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4819446 NCBI chr 1:178,039,002...178,137,469
Ensembl chr 1:178,039,063...178,137,465
JBrowse link
G Clock clock circadian regulator IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4819446|PMID:20562852)
Ensembl
UniProt
RGD
PMID:20562852 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4819446 NCBI chr14:34,418,226...34,502,218
Ensembl chr14:34,446,616...34,502,218
JBrowse link
G Rheb Ras homolog, mTORC1 binding ISO
IEA
(PMID:19258434)
GO_REF:0000107
RGD
Ensembl
PMID:19258434 GO_REF:0000107 NCBI chr 4:6,827,429...6,873,384
Ensembl chr 4:6,827,429...6,873,383
JBrowse link
type B pancreatic cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO
ISS
IEA
(PMID:11865031)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:11865031 GO_REF:0000024, GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp5 bone morphogenetic protein 5 ISO (PMID:11865031) RGD PMID:11865031 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO (PMID:11865031) RGD PMID:11865031 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Cdk6 cyclin-dependent kinase 6 ISO (PMID:20668294) RGD PMID:20668294 NCBI chr 4:27,781,728...27,969,653
Ensembl chr 4:27,785,647...27,966,398
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5426345|PMID:22529374)
Ensembl
UniProt
RGD
PMID:22529374 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5426345 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:159,902,441...159,965,003
Ensembl chr 3:159,902,441...159,965,003
JBrowse link
G Insm1 INSM transcriptional repressor 1 ISO MGI:MGI:3656035 (MGI:MGI:3655758|PMID:16951258) RGD PMID:16951258 MGI:MGI:3655758 NCBI chr 3:140,427,961...140,430,467 JBrowse link
G Mir375 microRNA 375 ISO (MGI:MGI:3775688|PMID:17804764) RGD PMID:17804764 MGI:MGI:3775688 NCBI chr 9:82,161,716...82,161,790
Ensembl chr 9:82,161,716...82,161,790
JBrowse link
G Mir503 microRNA 503 ISO (MGI:MGI:3775688|PMID:17804764) RGD PMID:17804764 MGI:MGI:3775688 NCBI chr  X:158,148,476...158,148,546
Ensembl chr  X:158,148,476...158,148,546
JBrowse link
G Mir541 microRNA 541 ISO (MGI:MGI:3775688|PMID:17804764) RGD PMID:17804764 MGI:MGI:3775688 NCBI chr 6:133,892,655...133,892,744
Ensembl chr 6:133,892,655...133,892,744
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO MGI:MGI:1932100 (MGI:MGI:3703458|PMID:17202186), (MGI:MGI:3761395|PMID:17456846) RGD PMID:17202186, PMID:17456846 MGI:MGI:3703458, MGI:MGI:3761395 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Nkx6-1 NK6 homeobox 1 IEP RGD PMID:9603781 RGD:2326025 NCBI chr14:9,555,264...9,562,197
Ensembl chr14:9,555,264...9,562,189
JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase-1 ISO (MGI:MGI:4365695|PMID:19635472) RGD PMID:19635472 MGI:MGI:4365695 NCBI chr10:13,446,373...13,525,248
Ensembl chr10:13,451,624...13,515,448
JBrowse link
G Sidt2 SID1 transmembrane family, member 2 ISO
IEA
MGI:MGI:5532825 (MGI:MGI:5529865|PMID:23776622)
GO_REF:0000107
RGD
Ensembl
PMID:23776622 GO_REF:0000107, MGI:MGI:5529865 NCBI chr 8:50,230,335...50,246,979
Ensembl chr 8:50,230,339...50,246,656
JBrowse link
G Smo smoothened, frizzled class receptor ISO
IEA
MGI:MGI:2176256|MGI:MGI:2684317 (MGI:MGI:4833770|PMID:20185815)
GO_REF:0000107
RGD
Ensembl
PMID:20185815 GO_REF:0000107, MGI:MGI:4833770 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1857617 (MGI:MGI:3663526|PMID:16246260)
GO_REF:0000107
RGD
Ensembl
PMID:16246260 GO_REF:0000107, MGI:MGI:3663526 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
type B pancreatic cell maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfx3 regulatory factor X3 ISO (MGI:MGI:4941444|PMID:20413507) RGD PMID:20413507 MGI:MGI:4941444 NCBI chr 1:245,853,332...246,110,648
Ensembl chr 1:245,859,633...246,110,218
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        cell development 2526
          epithelial cell development 284
            columnar/cuboidal epithelial cell development 80
              auditory receptor cell development + 32
              columnar/cuboidal epithelial cell maturation + 6
              glandular epithelial cell development + 28
              intestinal epithelial cell development + 18
              ovarian follicle cell development + 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        tissue development 2094
          epithelium development 1257
            epithelial cell differentiation 707
              epithelial cell development 284
                columnar/cuboidal epithelial cell development 80
                  auditory receptor cell development + 32
                  columnar/cuboidal epithelial cell maturation + 6
                  glandular epithelial cell development + 28
                  intestinal epithelial cell development + 18
                  ovarian follicle cell development + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.