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ONTOLOGY REPORT - ANNOTATIONS


Term:lens morphogenesis in camera-type eye
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Accession:GO:0002089 term browser browse the term
Definition:The process in which the anatomical structures of the lens are generated and organized. The lens is a transparent structure in the eye through which light is focused onto the retina. An example of this process is found in Mus musculus.
Synonyms:exact_synonym: lens morphogenesis;   lens morphogenesis in camera-style eye


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lens morphogenesis in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member ISO MGI:MGI:4359826 (MGI:MGI:4358852|PMID:19365570) RGD PMID:19365570 MGI:MGI:4358852 NCBI chr 2:226,563,050...226,679,449
Ensembl chr 2:226,563,050...226,679,438
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:3045749|MGI:MGI:3696062 (MGI:MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:MGI:3807101 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:1858023|MGI:MGI:3665274|MGI:MGI:3665275 (MGI:MGI:3655912|PMID:16799046), (MGI:MGI:82388|PMID:8812430) RGD PMID:8812430, PMID:16799046 MGI:MGI:3655912, MGI:MGI:82388 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148567|MGI:MGI:3045749 (MGI:MGI:3603687|PMID:16102745)
GO_REF:0000107
RGD
Ensembl
PMID:16102745 GO_REF:0000107, MGI:MGI:3603687 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO (MGI:MGI:1933072|PMID:11290300) RGD PMID:11290300 MGI:MGI:1933072 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Lctl lactase-like ISO (MGI:MGI:6274960|PMID:29425878) RGD PMID:29425878 MGI:MGI:6274960 NCBI chr 8:69,070,340...69,090,405
Ensembl chr 8:69,070,994...69,086,992
JBrowse link
G Meis1 Meis homeobox 1 ISO MGI:MGI:3029063 (MGI:MGI:3028436|PMID:14713950) RGD PMID:14713950 MGI:MGI:3028436 NCBI chr14:103,182,178...103,321,809
Ensembl chr14:103,181,281...103,321,270
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3605480 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 ISO MGI:MGI:3605481 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr11:57,897,879...57,995,193
Ensembl chr11:57,897,879...57,993,548
JBrowse link
G Pitx3 paired-like homeodomain 3 ISO
ISS
(MGI:MGI:4353482|PMID:19334279)
GO_REF:0000024
RGD
UniProt
PMID:19334279 GO_REF:0000024, MGI:MGI:4353482 NCBI chr 1:265,886,766...265,899,947
Ensembl chr 1:265,887,230...265,899,958
JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:MGI:1332720|PMID:10080188) RGD PMID:10080188 MGI:MGI:1332720 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:MGI:3693412 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:MGI:2137412 (MGI:MGI:1201714|PMID:9512512) RGD PMID:9512512 MGI:MGI:1201714
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3797299|PMID:18423449)
GO_REF:0000024
RGD
UniProt
PMID:18423449 GO_REF:0000024, MGI:MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Tdrd7 tudor domain containing 7 ISO
ISS
(PMID:21436445)
GO_REF:0000024
(MGI:MGI:4943339|PMID:21436445)
RGD
UniProt
PMID:21436445 GO_REF:0000024, MGI:MGI:4943339 NCBI chr 5:61,557,909...61,631,719
Ensembl chr 5:61,564,864...61,631,710
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2176682 (MGI:MGI:1329246|PMID:9918694), (MGI:MGI:3774683|PMID:18224708) RGD PMID:9918694, PMID:18224708 MGI:MGI:1329246, MGI:MGI:3774683 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 ISO (MGI:MGI:3525751|PMID:15572692) RGD PMID:15572692 MGI:MGI:3525751 NCBI chr 9:67,234,612...67,284,504
Ensembl chr 9:67,234,303...67,282,600
JBrowse link
G Atf4 activating transcription factor 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:1339872|PMID:10096021), (MGI:MGI:1859108|PMID:10885750), (MGI:MGI:2158533|PMID:11806972)
UniProt
RGD
PMID:10096021, PMID:10885750, PMID:11806972 GO_REF:0000024, MGI:MGI:1339872, MGI:MGI:1859108, MGI:MGI:2158533 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:3665275|MGI:MGI:3777403 (MGI:MGI:3655912|PMID:16799046), (MGI:MGI:3775669|PMID:18056999) RGD PMID:16799046, PMID:18056999 MGI:MGI:3655912, MGI:MGI:3775669 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Crygb crystallin, gamma B ISO MGI:MGI:1857597 (MGI:MGI:3691890|PMID:12426373), (MGI:MGI:81294|PMID:8626090) RGD PMID:8626090, PMID:12426373 MGI:MGI:3691890, MGI:MGI:81294 NCBI chr 9:71,796,204...71,798,265
Ensembl chr 9:71,796,204...71,798,265
JBrowse link
G Epha2 Eph receptor A2 ISO (MGI:MGI:3831440|PMID:18948590) RGD PMID:18948590 MGI:MGI:3831440 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194)
(MGI:MGI:1332720|PMID:10080188)
RGD PMID:10080188, PMID:11850194 MGI:MGI:1332720 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 ISO MGI:MGI:1856684 (MGI:MGI:5551670|PMID:24239381) RGD PMID:24239381 MGI:MGI:5551670 NCBI chr 3:147,772,006...147,790,946
Ensembl chr 3:147,772,165...147,789,158
JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO
IEA
MGI:MGI:1857137 (MGI:MGI:1316914|PMID:9851982)
GO_REF:0000107
RGD
Ensembl
PMID:9851982 GO_REF:0000107, MGI:MGI:1316914 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO MGI:MGI:98364 (MGI:MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:MGI:3701404 NCBI chr13:84,075,316...84,217,368
Ensembl chr13:84,083,632...84,217,366
JBrowse link
G Six3 SIX homeobox 3 ISO MGI:MGI:3693322 (MGI:MGI:3692850|PMID:17066077) RGD PMID:17066077 MGI:MGI:3692850 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:101898 (MGI:MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:MGI:3701404 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:1888387 (MGI:MGI:1347707|PMID:10571739) RGD PMID:10571739 MGI:MGI:1347707 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure morphogenesis 2872
        lens morphogenesis in camera-type eye 27
          lens fiber cell morphogenesis 7
          lens induction in camera-type eye 7
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            animal organ development 4027
              animal organ morphogenesis 1148
                sensory organ morphogenesis 319
                  eye morphogenesis 185
                    camera-type eye morphogenesis 147
                      lens morphogenesis in camera-type eye 27
                        lens fiber cell morphogenesis 7
                        lens induction in camera-type eye 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.