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ONTOLOGY REPORT - ANNOTATIONS


Term:heart valve formation
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Accession:GO:0003188 term browser browse the term
Definition:The developmental process pertaining to the initial formation of a heart valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.


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heart valve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scx scleraxis bHLH transcription factor ISO (MGI:MGI:4413438|PMID:18802027) RGD PMID:18802027 MGI:MGI:4413438 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO MGI:MGI:2385468|MGI:MGI:2450311 (MGI:MGI:3709829|PMID:17350610) RGD PMID:17350610 MGI:MGI:3709829 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
atrioventricular valve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata4 GATA binding protein 4 ISO UniProtKB:P97471 (MGI:MGI:4946551|PMID:21330551) RGD PMID:21330551 MGI:MGI:4946551 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO (MGI:MGI:3703467|PMID:17259303) RGD PMID:17259303 MGI:MGI:3703467 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Olfm1 olfactomedin 1 ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 3:6,761,031...6,798,739
Ensembl chr 3:6,773,813...6,798,737
JBrowse link
G Smad4 SMAD family member 4 ISO
IEA
UniProtKB:Q08369 (MGI:MGI:4946551|PMID:21330551)
GO_REF:0000107
RGD
Ensembl
PMID:21330551 GO_REF:0000107, MGI:MGI:4946551 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
endocardial cushion to mesenchymal transition involved in heart valve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efna1 ephrin A1 ISO (MGI:MGI:4847981|PMID:20960543) RGD PMID:20960543 MGI:MGI:4847981 NCBI chr 2:188,588,808...188,596,156
Ensembl chr 2:188,588,796...188,596,222
JBrowse link
G Erg ETS transcription factor ERG ISO MGI:MGI:5443838 (MGI:MGI:5442628|PMID:22932696) RGD PMID:22932696 MGI:MGI:5442628 NCBI chr11:35,645,317...35,749,637
Ensembl chr11:35,646,116...35,749,594
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO MGI:MGI:1341884 (MGI:MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:MGI:3530185 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO MGI:MGI:1341800 (MGI:MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:MGI:3530185 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
mitral valve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dchs1 dachsous cadherin-related 1 ISO (PMID:26258302) RGD PMID:26258302 NCBI chr 1:170,594,981...170,629,062
Ensembl chr 1:170,594,822...170,628,915
JBrowse link
G Notch1 notch receptor 1 ISO (PMID:16025100) RGD PMID:16025100 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Zfpm1 zinc finger protein, multitype 1 ISO (MGI:MGI:3583527|PMID:14614148) RGD PMID:14614148 MGI:MGI:3583527 NCBI chr19:55,094,585...55,150,994
Ensembl chr19:55,094,585...55,150,686
JBrowse link
positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Twist1 twist family bHLH transcription factor 1 ISO (MGI:MGI:4838344|PMID:20804746) RGD PMID:20804746 MGI:MGI:4838344 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
pulmonary valve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja5 gap junction protein, alpha 5 ISO (PMID:22199024) RGD PMID:22199024 NCBI chr 2:199,162,745...199,184,942
Ensembl chr 2:199,162,745...199,184,939
JBrowse link
G Tbx20 T-box transcription factor 20 ISO (MGI:MGI:3604925|PMID:15843409) RGD PMID:15843409 MGI:MGI:3604925 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
tricuspid valve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO MGI:MGI:3574394 (MGI:MGI:3574376|PMID:15297376) RGD PMID:15297376 MGI:MGI:3574376 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Zfpm1 zinc finger protein, multitype 1 ISO (MGI:MGI:3583527|PMID:14614148) RGD PMID:14614148 MGI:MGI:3583527 NCBI chr19:55,094,585...55,150,994
Ensembl chr19:55,094,585...55,150,686
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure formation involved in morphogenesis 1213
        heart valve formation 15
          aortic valve formation 0
          atrioventricular valve formation + 8
          coronary sinus valve formation 0
          endocardial cushion to mesenchymal transition involved in heart valve formation + 5
          pulmonary valve formation 2
          sinoatrial valve formation 0
          ventriculo bulbo valve formation 0
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            animal organ development 4035
              heart development 687
                heart valve development 59
                  heart valve morphogenesis 49
                    heart valve formation 15
                      aortic valve formation 0
                      atrioventricular valve formation + 8
                      coronary sinus valve formation 0
                      endocardial cushion to mesenchymal transition involved in heart valve formation + 5
                      pulmonary valve formation 2
                      sinoatrial valve formation 0
                      ventriculo bulbo valve formation 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.