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ONTOLOGY REPORT - ANNOTATIONS


Term:cardiac chamber formation
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Accession:GO:0003207 term browser browse the term
Definition:The developmental process pertaining to the initial formation of a cardiac chamber from unspecified parts. A cardiac chamber is an enclosed cavity within the heart.
Synonyms:exact_synonym: heart chamber formation


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cardiac chamber formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 ISO (MGI:4837019|PMID:20890042) RGD PMID:20890042 MGI:4837019 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Tbx20 T-box transcription factor 20 ISO MGI:3580099 (MGI:3579960|PMID:15901664), (MGI:4943647|PMID:19661464) RGD PMID:15901664, PMID:19661464 MGI:3579960, MGI:4943647 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
cardiac atrium formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 ISO (MGI:3640731|PMID:16730346) RGD PMID:16730346 MGI:3640731 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (PMID:18297060) RGD PMID:18297060 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
cardiac left ventricle formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:18276607) RGD PMID:18276607 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Tbx5 T-box transcription factor 5 IEA
ISO
IBA
GO_REF:0000107
(MGI:4356350|PMID:19727199)
PMID:21873635
Ensembl
RGD
PMID:19727199, PMID:21873635 GO_REF:0000107, MGI:4356350, RGD:13792537 NCBI chr12:42,059,688...42,148,226
Ensembl chr12:42,097,626...42,148,146
JBrowse link
cardiac right ventricle formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:18276607) RGD PMID:18276607 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IEA
ISO
GO_REF:0000107
(MGI:1926848|PMID:11076755)
Ensembl
RGD
PMID:11076755 GO_REF:0000107, MGI:1926848 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Notch1 notch receptor 1 ISO MGI:1933835|MGI:2447758 (MGI:4438134|PMID:19620969) RGD PMID:19620969 MGI:4438134 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO MGI:2148567 (MGI:3828346|PMID:17519332) RGD PMID:17519332 MGI:3828346 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
cardiac ventricle formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mef2c myocyte enhancer factor 2C IEA
ISO
GO_REF:0000107
MGI:97350 (MGI:3820390|PMID:19035347), (MGI:3830899|PMID:16680724)
Ensembl
RGD
PMID:16680724, PMID:19035347 GO_REF:0000107, MGI:3820390, MGI:3830899 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (PMID:18297060) RGD PMID:18297060 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Nkx2-5 NK2 homeobox 5 IEA
ISO
GO_REF:0000107
MGI:99458 (MGI:3820390|PMID:19035347)
Ensembl
RGD
PMID:19035347 GO_REF:0000107, MGI:3820390 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Sox11 SRY-box transcription factor 11 ISS
ISO
GO_REF:0000024
(MGI:5285157|PMID:20596238)
UniProt
RGD
PMID:20596238 GO_REF:0000024, MGI:5285157 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:5285157|PMID:20596238) RGD PMID:20596238 MGI:5285157 NCBI chr17:37,615,022...37,619,728 JBrowse link
negative regulation of cardiac chamber formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 ISO (MGI:3039059|PMID:15042700) RGD PMID:15042700 MGI:3039059 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure formation involved in morphogenesis 1214
        cardiac chamber formation 13
          bulbus arteriosus formation 0
          cardiac atrium formation + 2
          cardiac ventricle formation + 10
          conus arteriosus formation 0
          negative regulation of cardiac chamber formation + 1
          positive regulation of cardiac chamber formation + 0
          regulation of cardiac chamber formation + 1
          sinus venosus formation 0
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            animal organ development 4033
              heart development 687
                heart morphogenesis 280
                  cardiac chamber morphogenesis 145
                    cardiac chamber formation 13
                      bulbus arteriosus formation 0
                      cardiac atrium formation + 2
                      cardiac ventricle formation + 10
                      conus arteriosus formation 0
                      negative regulation of cardiac chamber formation + 1
                      positive regulation of cardiac chamber formation + 0
                      regulation of cardiac chamber formation + 1
                      sinus venosus formation 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.