Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:growth plate cartilage development
go back to main search page
Accession:GO:0003417 term browser browse the term
Definition:The process whose specific outcome is the progression of the cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow.


show annotations for term's descendants           Sort by:
 
growth plate cartilage development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain IEP spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col9a1 collagen type IX alpha 1 chain ISO MGI:2152964|MGI:88469|MGI:98737|MGI:98739 (MGI:3795666|PMID:18467703), (MGI:3807836|PMID:18191556) RGD PMID:18191556, PMID:18467703 MGI:3795666, MGI:3807836 NCBI chr 9:30,419,001...30,502,307
Ensembl chr 9:30,419,001...30,502,298
JBrowse link
G Comp cartilage oligomeric matrix protein IEA
ISO
GO_REF:0000107
MGI:2180787|MGI:3758741|MGI:88465|MGI:98737|MGI:98739 (MGI:3723532|PMID:17588960), (MGI:3795666|PMID:18467703), (MGI:3807836|PMID:18191556)
Ensembl
RGD
PMID:17588960, PMID:18191556, PMID:18467703 GO_REF:0000107, MGI:3723532, MGI:3795666, MGI:3807836 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Ift80 intraflagellar transport 80 ISO MGI:3665440|MGI:5818514 (MGI:5817320|PMID:26098911) RGD PMID:26098911 MGI:5817320 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G Mmp13 matrix metallopeptidase 13 IEA
ISO
GO_REF:0000107
MGI:98729 (MGI:4949554|PMID:21444811)
Ensembl
RGD
PMID:21444811 GO_REF:0000107, MGI:4949554 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Rara retinoic acid receptor, alpha ISO MGI:97858 (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:97858 (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:97856|MGI:97857 (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO MGI:1340026 (MGI:4949016|PMID:21420963) RGD PMID:21420963 MGI:4949016 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Thbs1 thrombospondin 1 ISO MGI:2154534|MGI:88465|MGI:88469|MGI:98739 (MGI:3795666|PMID:18467703) RGD PMID:18467703 MGI:3795666 NCBI chr 3:109,862,120...109,873,466
Ensembl chr 3:109,862,117...109,873,466
JBrowse link
G Thbs3 thrombospondin 3 ISO MGI:3581964|MGI:88465|MGI:88469|MGI:98737 (MGI:3795666|PMID:18467703) RGD PMID:18467703 MGI:3795666 NCBI chr 2:188,528,979...188,540,738
Ensembl chr 2:188,528,979...188,540,736
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:2180033 (MGI:2178865|PMID:11923874) RGD PMID:11923874 MGI:2178865 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:50,891,137...50,901,791
Ensembl chr15:50,891,127...50,903,162
JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain ISO MGI:5315593 (MGI:5315238|PMID:22206015) RGD PMID:22206015 MGI:5315238 NCBI chr 5:79,054,004...79,172,442
Ensembl chr 5:79,055,521...79,170,765
JBrowse link
G Poc1a POC1 centriolar protein A ISO MGI:2135614 (MGI:5700251|PMID:26496357) RGD PMID:26496357 MGI:5700251 NCBI chr 8:114,982,764...115,050,844
Ensembl chr 8:114,986,326...115,050,728
JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa6 annexin A6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:40,320,581...40,375,605
Ensembl chr10:40,320,581...40,375,605
JBrowse link
G Ift80 intraflagellar transport 80 ISO MGI:3665440|MGI:5818514 (MGI:5817320|PMID:26098911) RGD PMID:26098911 MGI:5817320 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G Nppc natriuretic peptide C ISS
ISO
GO_REF:0000024
(MGI:2177134|PMID:11259675)
UniProt
RGD
PMID:11259675 GO_REF:0000024, MGI:2177134 NCBI chr 9:93,731,436...93,735,636
Ensembl chr 9:93,731,436...93,735,636
JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rarg retinoic acid receptor, gamma ISO (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO
GO_REF:0000024
(MGI:5317468|PMID:22421045)
UniProt
RGD
PMID:22421045 GO_REF:0000024, MGI:5317468 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO MGI:2384513 (MGI:4949016|PMID:21420963) RGD PMID:21420963 MGI:4949016 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1 ISO MGI:2153042|MGI:3663272 (MGI:3655339|PMID:16877353) RGD PMID:16877353 MGI:3655339 NCBI chr 5:149,077,412...149,086,957
Ensembl chr 5:149,077,412...149,086,957
JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist ISO (PMID:19113921) RGD PMID:19113921 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Nppc natriuretic peptide C ISS
ISO
GO_REF:0000024
(MGI:2177134|PMID:11259675)
UniProt
RGD
PMID:11259675 GO_REF:0000024, MGI:2177134 NCBI chr 9:93,731,436...93,735,636
Ensembl chr 9:93,731,436...93,735,636
JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein ISO MGI:2653208 (MGI:6187806|PMID:26972716) RGD PMID:26972716 MGI:6187806 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 ISO MGI:2663959 (MGI:4365886|PMID:19725955) RGD PMID:19725955 MGI:4365886 NCBI chr 8:22,577,723...22,622,555
Ensembl chr 8:22,577,715...22,622,560
JBrowse link
G Por cytochrome p450 oxidoreductase IMP positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr12:23,998,411...24,017,063
Ensembl chr12:23,998,411...24,046,814
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    multicellular organismal process 9047
      organ growth 214
        bone growth 37
          endochondral bone growth 32
            growth plate cartilage development 23
              growth plate cartilage chondrocyte differentiation + 9
              growth plate cartilage chondrocyte proliferation + 5
              growth plate cartilage morphogenesis + 2
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            animal organ development 4033
              animal organ morphogenesis 1151
                skeletal system morphogenesis 262
                  bone morphogenesis 114
                    endochondral bone morphogenesis 66
                      cartilage development involved in endochondral bone morphogenesis 39
                        growth plate cartilage development 23
                          growth plate cartilage chondrocyte differentiation + 9
                          growth plate cartilage chondrocyte proliferation + 5
                          growth plate cartilage morphogenesis + 2
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.