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ONTOLOGY REPORT - ANNOTATIONS


Term:collagen binding
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Accession:GO:0005518 term browser browse the term
Definition:Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).


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collagen binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abi3bp ABI family member 3 binding protein JBrowse link 11 46,206,932 46,422,791 RGD:1624291
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:1624291
RGD:1600115
G Adam9 ADAM metallopeptidase domain 9 JBrowse link 16 71,810,377 71,887,926 RGD:1624291
G Adgrg1 adhesion G protein-coupled receptor G1 JBrowse link 19 10,423,534 10,460,674 RGD:1600115
RGD:1624291
G Aebp1 AE binding protein 1 JBrowse link 14 86,101,253 86,111,323 RGD:1600115
RGD:1624291
G Antxr1 ANTXR cell adhesion molecule 1 JBrowse link 4 118,946,267 119,131,202 RGD:1600115
RGD:1624291
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 19 41,805,252 41,860,076 RGD:634622
G Aspn asporin JBrowse link 17 14,655,958 14,681,355 RGD:1600115
G Aspnl1 asporin-like 1 JBrowse link 17 15,496,470 15,521,143 RGD:1600115
G C1qtnf1 C1q and TNF related 1 JBrowse link 10 107,455,845 107,477,160 RGD:1600115
RGD:1624291
G Ccbe1 collagen and calcium binding EGF domains 1 JBrowse link 18 61,758,754 62,013,194 RGD:1624291
RGD:1600115
G Chadl chondroadherin-like JBrowse link 7 122,915,847 122,929,127 RGD:1624291
G Coch cochlin JBrowse link 6 72,359,702 72,373,710 RGD:1624291
G Col6a1 collagen type VI alpha 1 chain JBrowse link 20 12,657,913 12,676,370 RGD:1624291
G Col6a2 collagen type VI alpha 2 chain JBrowse link 20 12,773,472 12,801,179 RGD:1624291
G Comp cartilage oligomeric matrix protein JBrowse link 16 20,798,437 20,807,070 RGD:1600115
RGD:1624291
G Cspg4 chondroitin sulfate proteoglycan 4 JBrowse link 8 61,532,465 61,567,510 RGD:8553708
G Ctsb cathepsin B JBrowse link 15 46,316,741 46,337,613 RGD:1624291
RGD:1600115
G Ctsk cathepsin K JBrowse link 2 196,655,469 196,666,447 RGD:1624291
G Ctsl cathepsin L JBrowse link 17 1,873,105 1,879,266 RGD:1624291
G Ctss cathepsin S JBrowse link 2 197,655,780 197,679,768 RGD:1624291
RGD:1600115
G Dcn decorin JBrowse link 7 38,742,250 38,782,282 RGD:728372
G Ddr1 discoidin domain receptor tyrosine kinase 1 JBrowse link 20 3,553,430 3,574,959 RGD:1600115
RGD:13792537
RGD:1624291
G Ddr2 discoidin domain receptor tyrosine kinase 2 JBrowse link 13 88,311,639 88,436,561 RGD:727757
RGD:13792537
RGD:1624291
G Dpp4 dipeptidylpeptidase 4 JBrowse link 3 48,291,055 48,372,672 RGD:1626468
G Dspp dentin sialophosphoprotein JBrowse link 14 6,926,972 6,933,079 RGD:12914146
RGD:13792537
G Ecm2 extracellular matrix protein 2 JBrowse link 17 15,533,760 15,566,403 RGD:1624291
G Gp5 glycoprotein V (platelet) JBrowse link 11 73,015,380 73,017,570 RGD:1624291
G Gp6 glycoprotein VI JBrowse link 1 72,994,977 73,064,639 RGD:1624291
RGD:1600115
G Grm1 glutamate metabotropic receptor 1 JBrowse link 1 4,753,141 5,165,859 RGD:1600115
G Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 JBrowse link 3 82,924,699 83,048,465 RGD:1624291
G Itga1 integrin subunit alpha 1 JBrowse link 2 47,127,403 47,281,387 RGD:2302138
G Itga11 integrin subunit alpha 11 JBrowse link 8 67,566,874 67,683,973 RGD:1624291
G Itga2 integrin subunit alpha 2 JBrowse link 2 46,996,904 47,097,011 RGD:8693310
RGD:1624291
RGD:8693319
G Itga3 integrin subunit alpha 3 JBrowse link 10 82,855,841 82,887,755 RGD:2325829
G Itga9 integrin subunit alpha 9 JBrowse link 8 127,271,029 127,576,709 RGD:2317878
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:2325829
G Lox lysyl oxidase JBrowse link 18 47,500,320 47,577,819 RGD:1624291
RGD:1600115
G Lrrc15 leucine rich repeat containing 15 JBrowse link 11 74,040,846 74,052,179 RGD:1600115
RGD:1624291
G Lum lumican JBrowse link 7 38,820,058 38,826,862 RGD:1624291
RGD:13792537
G Map1a microtubule-associated protein 1A JBrowse link 3 113,251,918 113,272,193 RGD:634622
G Mmp12 matrix metallopeptidase 12 JBrowse link 8 5,594,717 5,616,494 RGD:1600115
RGD:1624291
G Mmp13 matrix metallopeptidase 13 JBrowse link 8 5,522,739 5,533,018 RGD:1600115
RGD:1624291
G Mrc2 mannose receptor, C type 2 JBrowse link 10 93,520,272 93,581,599 RGD:1579812
RGD:1624291
RGD:1600115
G Nid1 nidogen 1 JBrowse link 17 90,553,161 90,627,133 RGD:1624291
RGD:1600115
G Pak1 p21 (RAC1) activated kinase 1 JBrowse link 1 162,768,156 162,883,356 RGD:1624291
RGD:1600115
G Pcolce procollagen C-endopeptidase enhancer JBrowse link 12 22,153,995 22,160,311 RGD:1624291
RGD:1600115
G PCOLCE2 procollagen C-endopeptidase enhancer 2 JBrowse link 8 103,459,219 103,484,557 RGD:1624291
G Pdgfa platelet derived growth factor subunit A JBrowse link 12 17,734,141 17,756,186 RGD:1624291
RGD:1600115
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:1624291
RGD:1600115
G Podn podocan JBrowse link 5 127,617,482 127,637,898 RGD:1624291
G Ppib peptidylprolyl isomerase B JBrowse link 8 71,719,681 71,725,538 RGD:13792537
G Rell2 RELT-like 2 JBrowse link 18 31,094,965 31,098,536 RGD:1624291
G RGD1562885 similar to RIKEN cDNA 2300002M23 JBrowse link 20 3,689,608 3,691,164 RGD:1624291
G Scp2 sterol carrier protein 2 JBrowse link 5 127,647,934 127,735,703 RGD:1600115
G Serpinh1 serpin family H member 1 JBrowse link 1 164,301,010 164,308,306 RGD:68754
RGD:1600115
G Smad3 SMAD family member 3 JBrowse link 8 68,569,530 68,678,349 RGD:1624291
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:1624291
RGD:1600115
G Smad7 SMAD family member 7 JBrowse link 18 71,395,830 71,424,164 RGD:1624291
RGD:1600115
G Sparc secreted protein acidic and cysteine rich JBrowse link 10 40,742,390 40,764,232 RGD:1624291
RGD:13792537
G Sparcl1 SPARC like 1 JBrowse link 14 6,994,261 7,025,309 RGD:13792537
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 JBrowse link 20 29,654,926 29,679,927 RGD:13792537
G Spock3 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 JBrowse link 16 28,372,067 28,716,762 RGD:13792537
G Srgn serglycin JBrowse link 20 32,120,317 32,158,071 RGD:2316806
G Tgfbi transforming growth factor, beta induced JBrowse link 17 8,400,123 8,429,338 RGD:1624291
G Thbs4 thrombospondin 4 JBrowse link 2 22,343,727 22,385,855 RGD:1580072
G Tll1 tolloid-like 1 JBrowse link 16 27,399,467 27,597,240 RGD:1624291
G Tnxb tenascin XB RGD:1624291
G Ush2a usherin JBrowse link 13 106,750,738 107,434,195 RGD:1624291
G Vtn vitronectin JBrowse link 10 65,767,960 65,771,040 RGD:10003090
G Vwf von Willebrand factor JBrowse link 4 158,085,059 158,219,525 RGD:1600115
RGD:1624291
collagen binding involved in cell-matrix adhesion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Itga1 integrin subunit alpha 1 JBrowse link 2 47,127,403 47,281,387 RGD:1624291
G Itga10 integrin subunit alpha 10 JBrowse link 2 198,772,937 198,792,253 RGD:1624291
G Itga11 integrin subunit alpha 11 JBrowse link 8 67,566,874 67,683,973 RGD:1624291
G Itga2 integrin subunit alpha 2 JBrowse link 2 46,996,904 47,097,011 RGD:1624291
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:1600115
RGD:13792537
RGD:1624291
collagen V binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ecm2 extracellular matrix protein 2 JBrowse link 17 15,533,760 15,566,403 RGD:1624291
G Gpc1 glypican 1 JBrowse link 9 99,998,275 100,026,818 RGD:5683638
G Hspg2 heparan sulfate proteoglycan 2 JBrowse link 5 155,812,096 155,913,751 RGD:5683638
G LOC100910978 extracellular matrix protein 2-like JBrowse link 17 14,695,293 14,719,087 RGD:13792537
G RGD1562885 similar to RIKEN cDNA 2300002M23 JBrowse link 20 3,689,608 3,691,164 RGD:1624291
G Thbs1 thrombospondin 1 JBrowse link 3 109,862,120 109,873,466 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19527
    binding 15910
      protein-containing complex binding 1502
        collagen binding 76
          collagen V binding 6
          collagen binding involved in cell-matrix adhesion 5
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.