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ONTOLOGY REPORT - ANNOTATIONS


Term:collagen trimer
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Accession:GO:0005581 term browser browse the term
Definition:A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
Synonyms:xref: Wikipedia:Collagen


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collagen trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07006691.1 RGD:1600115
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:1600115
G C1qa complement C1q A chain JBrowse link 5 155,261,254 155,264,101 RGD:1600115
G C1qb complement C1q B chain JBrowse link 5 155,246,444 155,251,995 RGD:1600115
G C1qc complement C1q C chain JBrowse link 5 155,255,013 155,258,631 RGD:1600115
G C1ql1 complement C1q like 1 JBrowse link 10 91,040,005 91,047,177 RGD:1600115
G C1ql2 complement C1q like 2 JBrowse link 13 36,378,187 36,379,722 RGD:1600115
G C1ql3 complement C1q like 3 JBrowse link 17 80,314,186 80,320,681 RGD:1600115
G C1qtnf1 C1q and TNF related 1 JBrowse link 10 107,455,845 107,477,160 RGD:1600115
G C1qtnf2 C1q and TNF related 2 JBrowse link 10 29,067,102 29,084,035 RGD:1600115
G C1qtnf3 C1q and TNF related 3 JBrowse link 2 60,920,160 60,942,586 RGD:1600115
G C1qtnf5 C1q and TNF related 5 JBrowse link 8 48,443,515 48,445,639 RGD:1600115
G C1qtnf6 C1q and TNF related 6 JBrowse link 7 119,746,150 119,752,727 RGD:1600115
G C1qtnf7 C1q and TNF related 7 JBrowse link 14 72,011,518 72,122,257 RGD:1600115
G C1qtnf9 C1q and TNF related 9 JBrowse link 15 41,069,579 41,080,961 RGD:1600115
G Cert1 ceramide transporter 1 JBrowse link 2 27,365,145 27,469,797 RGD:1600115
G Col10a1 collagen type X alpha 1 chain JBrowse link 20 41,180,295 41,190,664 RGD:1624291
G Col11a1 collagen type XI alpha 1 chain JBrowse link 2 216,863,423 217,056,523 RGD:1624291
G Col11a2 collagen type XI alpha 2 chain JBrowse link 20 3,829,324 3,859,022 RGD:1624291
RGD:13792537
G Col13a1 collagen type XIII alpha 1 chain JBrowse link 20 31,456,502 31,598,360 RGD:1600115
G Col15a1 collagen type XV alpha 1 chain JBrowse link 5 62,840,360 62,950,240 RGD:1600115
G Col17a1 collagen type XVII alpha 1 chain JBrowse link 1 267,416,681 267,465,049 RGD:1600115
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:1624291
G Col1a2 collagen type I alpha 2 chain JBrowse link 4 31,534,225 31,569,152 RGD:1624291
G Col24a1 collagen type XXIV alpha 1 chain JBrowse link 2 251,200,686 251,436,254 RGD:13792537
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:1624291
RGD:13792537
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:1624291
G Col5a1 collagen type V alpha 1 chain JBrowse link 3 6,430,180 6,581,010 RGD:1624291
G Col5a2 collagen type V alpha 2 chain JBrowse link 9 52,091,088 52,238,735 RGD:1624291
G Col6a2 collagen type VI alpha 2 chain JBrowse link 20 12,773,472 12,801,179 RGD:1600115
G Col6a3 collagen type VI alpha 3 chain JBrowse link 9 97,926,784 98,004,643 RGD:1624291
G Col8a1 collagen type VIII alpha 1 chain JBrowse link 11 44,877,690 45,006,203 RGD:1600115
G Col8a2 collagen type VIII alpha 2 chain JBrowse link 5 144,308,527 144,335,142 RGD:1600115
G Colec10 collectin subfamily member 10 JBrowse link 7 93,975,451 94,035,999 RGD:1600115
G Colec11 collectin sub-family member 11 JBrowse link 6 47,857,767 47,889,961 RGD:1600115
G Colec12 collectin sub-family member 12 JBrowse link 18 867,048 1,054,047 RGD:1600115
G Colq collagen like tail subunit of asymmetric acetylcholinesterase JBrowse link 16 7,626,380 7,681,621 RGD:1600115
G Cthrc1 collagen triple helix repeat containing 1 JBrowse link 7 77,966,722 77,977,004 RGD:1600115
G Emilin1 elastin microfibril interfacer 1 JBrowse link 6 26,821,249 26,829,013 RGD:1600115
G Fcna ficolin A JBrowse link 3 2,850,006 2,853,230 RGD:1600115
G Fcnb ficolin B JBrowse link 3 6,617,816 6,626,193 RGD:1600115
G Gldn gliomedin JBrowse link 8 58,870,516 58,914,605 RGD:1600115
G LOC100911854 mannose-binding protein C-like JBrowse link 1 248,723,370 248,730,969 RGD:1600115
G LOC108348074 collagen alpha-1(XV) chain-like JBrowse link 5 64,475,618 64,543,510 RGD:1600115
G Lox lysyl oxidase JBrowse link 18 47,500,320 47,577,819 RGD:1624291
G Mbl1 mannose-binding lectin (protein A) 1 JBrowse link 16 18,736,154 18,742,193 RGD:1600115
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:1600115
G Otol1 otolin 1 JBrowse link 2 166,845,543 166,866,513 RGD:1600115
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 JBrowse link 10 39,435,227 39,464,134 RGD:1600115
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 JBrowse link 5 164,720,629 164,747,071 RGD:1600115
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:1600115
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:1600115
collagen type I trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:1624291
RGD:13792537
G Col1a2 collagen type I alpha 2 chain JBrowse link 4 31,534,225 31,569,152 RGD:1624291
RGD:13792537
collagen type II trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:1624291
RGD:13792537
RGD:1600115
collagen type III trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:1624291
RGD:13792537
collagen type IV trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col23a1 collagen type XXIII alpha 1 chain JBrowse link 10 34,846,618 34,934,991 RGD:13792537
G Col4a1 collagen type IV alpha 1 chain JBrowse link 16 83,522,162 83,632,153 RGD:1624291
RGD:13792537
G Col4a2 collagen type IV alpha 2 chain JBrowse link 16 83,386,388 83,522,169 RGD:1624291
RGD:13792537
G Col4a3 collagen type IV alpha 3 chain JBrowse link 9 88,357,528 88,484,735 RGD:1624291
RGD:13792537
G Col4a4 collagen type IV alpha 4 chain JBrowse link 9 88,314,763 88,357,183 RGD:1624291
RGD:13792537
G Col4a5 collagen type IV alpha 5 chain JBrowse link X 112,769,595 112,983,720 RGD:1624291
RGD:13792537
G Col4a6 collagen type IV alpha 6 chain JBrowse link X 112,405,647 112,768,337 RGD:1624291
RGD:13792537
G LOC100911572 collagen alpha-3(IV) chain-like JBrowse link 9 90,856,897 90,877,771 RGD:13792537
G LOC103693323 collagen alpha-1(XXIII) chain JBrowse link 10 36,741,139 37,031,200 RGD:13792537
collagen type IX trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col5a3 collagen type V alpha 3 chain JBrowse link 8 21,786,324 21,831,751 RGD:13792537
G Col9a1 collagen type IX alpha 1 chain JBrowse link 9 30,419,001 30,502,307 RGD:1624291
RGD:13792537
RGD:1600115
G Col9a2 collagen type IX alpha 2 chain JBrowse link 5 139,962,684 139,979,865 RGD:1624291
RGD:13792537
G Col9a3 collagen type IX alpha 3 chain JBrowse link 3 176,102,287 176,124,839 RGD:1624291
RGD:13792537
G Scara3 scavenger receptor class A, member 3 JBrowse link 15 42,605,505 42,638,409 RGD:13792537
collagen type V trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col5a1 collagen type V alpha 1 chain JBrowse link 3 6,430,180 6,581,010 RGD:70693
RGD:13792537
RGD:1624291
RGD:1600115
G Col5a2 collagen type V alpha 2 chain JBrowse link 9 52,091,088 52,238,735 RGD:70694
RGD:13792537
RGD:1624291
G Col5a3 collagen type V alpha 3 chain JBrowse link 8 21,786,324 21,831,751 RGD:70693
RGD:1624291
collagen type VI trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dcn decorin JBrowse link 7 38,742,250 38,782,282 RGD:728372
collagen type XI trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col11a1 collagen type XI alpha 1 chain JBrowse link 2 216,863,423 217,056,523 RGD:1624291
RGD:13792537
G Marco macrophage receptor with collagenous structure JBrowse link 16 85,115,199 85,147,683 RGD:13792537
collagen type XII trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col12a1 collagen type XII alpha 1 chain JBrowse link 8 87,042,820 87,150,701 RGD:727275
collagen type XVIII trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col18a1 collagen type XVIII alpha 1 chain JBrowse link 20 12,225,202 12,332,858 RGD:632362
fibrillar collagen trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col27a1 collagen type XXVII alpha 1 chain JBrowse link 5 79,054,004 79,172,442 RGD:1624291
G Lum lumican JBrowse link 7 38,820,058 38,826,862 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19737
    protein-containing complex 5748
      collagen trimer 72
        FACIT collagen trimer + 6
        anchoring collagen complex + 1
        basement membrane collagen trimer + 10
        collagen type VI trimer 1
        collagen type XXVI trimer 0
        collagen type XXVIII trimer 0
        fibrillar collagen trimer + 11
        network-forming collagen trimer + 9
        short-chain collagen trimer + 0
        transmembrane collagen trimer + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.