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ONTOLOGY REPORT - ANNOTATIONS


Term:fibrillar collagen trimer
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Accession:GO:0005583 term browser browse the term
Definition:Any triple helical collagen trimer that forms fibrils.


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fibrillar collagen trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col27a1 collagen type XXVII alpha 1 chain JBrowse link 5 79,054,004 79,172,442 RGD:1624291
G Lum lumican JBrowse link 7 38,820,058 38,826,862 RGD:1624291
collagen type I trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:1624291
RGD:13792537
G Col1a2 collagen type I alpha 2 chain JBrowse link 4 31,534,225 31,569,152 RGD:1624291
RGD:13792537
collagen type II trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:1624291
RGD:13792537
RGD:1600115
collagen type III trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:1624291
RGD:13792537
collagen type V trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col5a1 collagen type V alpha 1 chain JBrowse link 3 6,430,180 6,581,010 RGD:70693
RGD:13792537
RGD:1624291
RGD:1600115
G Col5a2 collagen type V alpha 2 chain JBrowse link 9 52,091,088 52,238,735 RGD:70694
RGD:13792537
RGD:1624291
G Col5a3 collagen type V alpha 3 chain JBrowse link 8 21,786,324 21,831,751 RGD:70693
RGD:1624291
collagen type XI trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col11a1 collagen type XI alpha 1 chain JBrowse link 2 216,863,423 217,056,523 RGD:1624291
RGD:13792537
G Marco macrophage receptor with collagenous structure JBrowse link 16 85,115,199 85,147,683 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19949
    protein-containing complex 5829
      collagen trimer 72
        fibrillar collagen trimer 11
          collagen type I trimer 2
          collagen type II trimer 1
          collagen type III trimer 1
          collagen type V trimer 3
          collagen type XI trimer 2
          collagen type XXIV trimer 0
          collagen type XXVII trimer 0
Path 2
Term Annotations click to browse term
  cellular_component 19949
    cellular anatomical entity 19598
      extracellular region 2422
        extracellular matrix 391
          collagen-containing extracellular matrix 244
            complex of collagen trimers 20
              banded collagen fibril 11
                fibrillar collagen trimer 11
                  collagen type I trimer 2
                  collagen type II trimer 1
                  collagen type III trimer 1
                  collagen type V trimer 3
                  collagen type XI trimer 2
                  collagen type XXIV trimer 0
                  collagen type XXVII trimer 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.