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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleus
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Accession:GO:0005634 term browser browse the term
Definition:A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Synonyms:exact_synonym: cell nucleus
 narrow_synonym: horsetail nucleus
 xref: NIF_Subcellular:sao1702920020;   Wikipedia:Cell_nucleus
 only_in_taxon: NCBITaxon:2759 ! Eukaryota


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Path 1
Term Annotations click to browse term
  cellular_component 132215
    intracellular 98756
      intracellular organelle 86411
        intracellular membrane-bounded organelle 73627
          nucleus 50308
            ARC complex 1
            ATF1-ATF4 transcription factor complex 16
            ATF4-CREB1 transcription factor complex 16
            ATR-ATRIP complex 0
            BRCA1-A complex 58
            BRCA1-B complex 0
            BRCA1-C complex 0
            BRCA1-Rad51 complex 0
            BRCA2-BRAF35 complex 1
            BRISC complex 41
            CAK-ERCC2 complex 32
            CLOCK-BMAL transcription complex 2
            COP9 signalosome 271
            CSL-Notch-Mastermind transcription factor complex 0
            CURI complex 11
            Cry-Per complex 5
            DNA helicase A complex 0
            DNA ligase III-XRCC1 complex 8
            DNA ligase IV complex 20
            DNA-dependent protein kinase complex 16
            DNA-dependent protein kinase-DNA ligase 4 complex 26
            E.F.G complex 0
            FHL2-CREB complex 0
            FHL3-CREB complex 0
            GATA1-TAL1-TCF3-Lmo2 complex 0
            GATA2-TAL1-TCF3-Lmo2 complex 0
            Ku70:Ku80 complex 25
            Lid2 complex 0
            LinE complex 0
            Mei2 nuclear dot complex 0
            Mre11 complex 52
            MutLalpha complex 21
            MutLbeta complex 0
            MutSalpha complex 18
            MutSbeta complex 16
            MutSgamma complex 0
            NURS complex 0
            Noc complex + 23
            P-TEFb-cap methyltransferase complex 0
            PCNA-p21 complex 16
            PDX1-PBX1b-MRG1 complex 0
            PcG protein complex + 366
            RC-1 DNA recombination complex 0
            RCAF complex 0
            RES complex 5
            RGS6-DNMT1-DMAP1 complex 0
            Rad51B-Rad51C complex 0
            Rad51B-Rad51C-Rad51D-XRCC2 complex 33
            Rad51C-XRCC3 complex 16
            Rhp55-Rhp57 complex 0
            SMC loading complex + 16
            SOSS complex 32
            SUMO activating enzyme complex 16
            THO complex + 53
            TRAMP complex 30
            Tor2-Mei2-Ste11 complex 0
            U2AF complex 32
            XRCC2-RAD51D complex 0
            activated SUMO-E1 ligase complex 0
            apolipoprotein B mRNA editing enzyme complex 10
            ascospore-type prospore nucleus 0
            assemblon 0
            carboxy-terminal domain protein kinase complex + 151
            catenin-TCF7L2 complex + 32
            chromatin silencing complex + 50
            core mediator complex 39
            dense nuclear body 0
            dosage compensation complex + 0
            exon-exon junction complex + 164
            generative cell nucleus 0
            germ cell nucleus + 268
            heteromeric SMAD protein complex 22
            histone pre-mRNA 3'end processing complex 52
            integrator complex 152
            left nucleus 0
            lobed nucleus 0
            mRNA cap methyltransferase complex 16
            macronucleus 0
            megasporocyte nucleus + 0
            micronucleus 0
            microprocessor complex 16
            microsporocyte nucleus 0
            mitotic checkpoint complex + 5
            nuclear DNA-directed RNA polymerase complex + 765
            nuclear RNA-directed RNA polymerase complex 6
            nuclear aryl hydrocarbon receptor complex 1
            nuclear cyclin-dependent protein kinase holoenzyme complex + 102
            nuclear envelope + 3314
            nuclear inclusion body 99
            nuclear lumen + 31338
            nuclear microtubule 6
            nuclear stress granule 48
            nuclear telomere cap complex + 81
            nuclear ubiquitin ligase complex + 314
            nucleosome disassembly/reassembly complex 0
            nucleotide-excision repair complex + 98
            nucleus lagging edge 0
            nucleus leading edge 0
            primary endosperm nucleus 0
            pronucleus + 181
            retrotransposon nucleocapsid 0
            right nucleus 0
            small nuclear ribonucleoprotein complex + 447
            spliceosomal complex + 1350
            tRNA-intron endonuclease complex 25
            telomerase holoenzyme complex + 154
            transcription export complex + 107
            transcription export complex 2 42
            transcription factor TFIIH core complex + 77
            upstream stimulatory factor complex 0
Path 2
Term Annotations click to browse term
  cellular_component 132215
    cellular anatomical entity 126642
      organelle 90683
        membrane-bounded organelle 80750
          intracellular membrane-bounded organelle 73627
            nucleus 50308
              ARC complex 1
              ATF1-ATF4 transcription factor complex 16
              ATF4-CREB1 transcription factor complex 16
              ATR-ATRIP complex 0
              BRCA1-A complex 58
              BRCA1-B complex 0
              BRCA1-C complex 0
              BRCA1-Rad51 complex 0
              BRCA2-BRAF35 complex 1
              BRISC complex 41
              CAK-ERCC2 complex 32
              CLOCK-BMAL transcription complex 2
              COP9 signalosome 271
              CSL-Notch-Mastermind transcription factor complex 0
              CURI complex 11
              Cry-Per complex 5
              DNA helicase A complex 0
              DNA ligase III-XRCC1 complex 8
              DNA ligase IV complex 20
              DNA-dependent protein kinase complex 16
              DNA-dependent protein kinase-DNA ligase 4 complex 26
              E.F.G complex 0
              FHL2-CREB complex 0
              FHL3-CREB complex 0
              GATA1-TAL1-TCF3-Lmo2 complex 0
              GATA2-TAL1-TCF3-Lmo2 complex 0
              Ku70:Ku80 complex 25
              Lid2 complex 0
              LinE complex 0
              Mei2 nuclear dot complex 0
              Mre11 complex 52
              MutLalpha complex 21
              MutLbeta complex 0
              MutSalpha complex 18
              MutSbeta complex 16
              MutSgamma complex 0
              NURS complex 0
              Noc complex + 23
              P-TEFb-cap methyltransferase complex 0
              PCNA-p21 complex 16
              PDX1-PBX1b-MRG1 complex 0
              PcG protein complex + 366
              RC-1 DNA recombination complex 0
              RCAF complex 0
              RES complex 5
              RGS6-DNMT1-DMAP1 complex 0
              Rad51B-Rad51C complex 0
              Rad51B-Rad51C-Rad51D-XRCC2 complex 33
              Rad51C-XRCC3 complex 16
              Rhp55-Rhp57 complex 0
              SMC loading complex + 16
              SOSS complex 32
              SUMO activating enzyme complex 16
              THO complex + 53
              TRAMP complex 30
              Tor2-Mei2-Ste11 complex 0
              U2AF complex 32
              XRCC2-RAD51D complex 0
              activated SUMO-E1 ligase complex 0
              apolipoprotein B mRNA editing enzyme complex 10
              ascospore-type prospore nucleus 0
              assemblon 0
              carboxy-terminal domain protein kinase complex + 151
              catenin-TCF7L2 complex + 32
              chromatin silencing complex + 50
              core mediator complex 39
              dense nuclear body 0
              dosage compensation complex + 0
              exon-exon junction complex + 164
              generative cell nucleus 0
              germ cell nucleus + 268
              heteromeric SMAD protein complex 22
              histone pre-mRNA 3'end processing complex 52
              integrator complex 152
              left nucleus 0
              lobed nucleus 0
              mRNA cap methyltransferase complex 16
              macronucleus 0
              megasporocyte nucleus + 0
              micronucleus 0
              microprocessor complex 16
              microsporocyte nucleus 0
              mitotic checkpoint complex + 5
              nuclear DNA-directed RNA polymerase complex + 765
              nuclear RNA-directed RNA polymerase complex 6
              nuclear aryl hydrocarbon receptor complex 1
              nuclear cyclin-dependent protein kinase holoenzyme complex + 102
              nuclear envelope + 3314
              nuclear inclusion body 99
              nuclear lumen + 31338
              nuclear microtubule 6
              nuclear stress granule 48
              nuclear telomere cap complex + 81
              nuclear ubiquitin ligase complex + 314
              nucleosome disassembly/reassembly complex 0
              nucleotide-excision repair complex + 98
              nucleus lagging edge 0
              nucleus leading edge 0
              primary endosperm nucleus 0
              pronucleus + 181
              retrotransposon nucleocapsid 0
              right nucleus 0
              small nuclear ribonucleoprotein complex + 447
              spliceosomal complex + 1350
              tRNA-intron endonuclease complex 25
              telomerase holoenzyme complex + 154
              transcription export complex + 107
              transcription export complex 2 42
              transcription factor TFIIH core complex + 77
              upstream stimulatory factor complex 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.