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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleus
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Accession:GO:0005634 term browser browse the term
Definition:A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Synonyms:exact_synonym: cell nucleus
 narrow_synonym: horsetail nucleus
 xref: MIPS_funcat:70.10;   NIF_Subcellular:sao1702920020;   Wikipedia:Cell_nucleus
 only_in_taxon: NCBITaxon:2759 ! Eukaryota


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Path 1
Term Annotations click to browse term
  cellular_component 19644
    intracellular 13631
      intracellular organelle 11901
        intracellular membrane-bounded organelle 9915
          nucleus 6776
            ARC complex 0
            ATR-ATRIP complex 0
            BRCA1-A complex 7
            BRCA1-B complex 0
            BRCA1-C complex 0
            BRCA1-Rad51 complex 0
            BRCA2-BRAF35 complex 0
            BRISC complex 5
            CAK-ERCC2 complex 1
            COP9 signalosome 34
            CURI complex 2
            DNA helicase A complex 0
            DNA ligase III-XRCC1 complex 1
            DNA ligase IV complex 3
            DNA-dependent protein kinase complex 2
            DNA-dependent protein kinase-DNA ligase 4 complex 4
            E.F.G complex 0
            FHL2-CREB complex 0
            FHL3-CREB complex 0
            GATA1-TAL1-TCF3-Lmo2 complex 0
            GATA2-TAL1-TCF3-Lmo2 complex 0
            Ku70:Ku80 complex 3
            Lid2 complex 0
            LinE complex 0
            MTREC complex 0
            Mei2 nuclear dot complex 0
            Mre11 complex 7
            MutLalpha complex 3
            MutLbeta complex 0
            MutSalpha complex 3
            MutSbeta complex 2
            MutSgamma complex 0
            Noc complex + 4
            P-TEFb-cap methyltransferase complex 0
            PCNA-p21 complex 2
            PDX1-PBX1b-MRG1 complex 0
            PcG protein complex + 49
            RC-1 DNA recombination complex 0
            RCAF complex 0
            RES complex 1
            RGS6-DNMT1-DMAP1 complex 0
            Rad51B-Rad51C complex 0
            Rad51B-Rad51C-Rad51D-XRCC2 complex 4
            Rad51C-XRCC3 complex 2
            Rhp55-Rhp57 complex 0
            SMC loading complex + 2
            SOSS complex 4
            SUMO activating enzyme complex 3
            THO complex + 8
            TRAMP complex 4
            Tor2-Mei2-Ste11 complex 0
            U2AF 5
            XRCC2-RAD51D complex 0
            activated SUMO-E1 ligase complex 0
            apolipoprotein B mRNA editing enzyme complex 1
            ascospore-type prospore nucleus 0
            assemblon 0
            carboxy-terminal domain protein kinase complex + 22
            catenin-TCF7L2 complex + 4
            dense nuclear body 0
            dosage compensation complex + 0
            exon-exon junction complex + 22
            generative cell nucleus 0
            germ cell nucleus + 35
            histone pre-mRNA 3'end processing complex 8
            integrator complex 21
            left nucleus 0
            lobed nucleus 0
            mRNA cap methyltransferase complex 2
            macronucleus 0
            megasporocyte nucleus + 0
            micronucleus 0
            microprocessor complex 2
            microsporocyte nucleus 0
            mitotic checkpoint complex + 1
            nuclear DNA-directed RNA polymerase complex + 108
            nuclear RNA-directed RNA polymerase complex 1
            nuclear aryl hydrocarbon receptor complex 0
            nuclear cyclin-dependent protein kinase holoenzyme complex + 15
            nuclear envelope + 464
            nuclear inclusion body 13
            nuclear lumen + 4045
            nuclear microtubule 1
            nuclear stress granule 5
            nuclear transcription factor complex + 200
            nuclear ubiquitin ligase complex + 43
            nucleosome disassembly/reassembly complex 0
            nucleotide-excision repair complex + 14
            nucleus lagging edge 0
            nucleus leading edge 0
            primary endosperm nucleus 0
            pronucleus + 24
            retrotransposon nucleocapsid 0
            right nucleus 0
            small nuclear ribonucleoprotein complex + 65
            spliceosomal complex + 185
            tRNA-intron endonuclease complex 5
            telomerase holoenzyme complex + 21
            transcription export complex + 16
            transcription export complex 2 5
Path 2
Term Annotations click to browse term
  cellular_component 19644
    cellular anatomical entity 19270
      organelle 12422
        membrane-bounded organelle 10803
          intracellular membrane-bounded organelle 9915
            nucleus 6776
              ARC complex 0
              ATR-ATRIP complex 0
              BRCA1-A complex 7
              BRCA1-B complex 0
              BRCA1-C complex 0
              BRCA1-Rad51 complex 0
              BRCA2-BRAF35 complex 0
              BRISC complex 5
              CAK-ERCC2 complex 1
              COP9 signalosome 34
              CURI complex 2
              DNA helicase A complex 0
              DNA ligase III-XRCC1 complex 1
              DNA ligase IV complex 3
              DNA-dependent protein kinase complex 2
              DNA-dependent protein kinase-DNA ligase 4 complex 4
              E.F.G complex 0
              FHL2-CREB complex 0
              FHL3-CREB complex 0
              GATA1-TAL1-TCF3-Lmo2 complex 0
              GATA2-TAL1-TCF3-Lmo2 complex 0
              Ku70:Ku80 complex 3
              Lid2 complex 0
              LinE complex 0
              MTREC complex 0
              Mei2 nuclear dot complex 0
              Mre11 complex 7
              MutLalpha complex 3
              MutLbeta complex 0
              MutSalpha complex 3
              MutSbeta complex 2
              MutSgamma complex 0
              Noc complex + 4
              P-TEFb-cap methyltransferase complex 0
              PCNA-p21 complex 2
              PDX1-PBX1b-MRG1 complex 0
              PcG protein complex + 49
              RC-1 DNA recombination complex 0
              RCAF complex 0
              RES complex 1
              RGS6-DNMT1-DMAP1 complex 0
              Rad51B-Rad51C complex 0
              Rad51B-Rad51C-Rad51D-XRCC2 complex 4
              Rad51C-XRCC3 complex 2
              Rhp55-Rhp57 complex 0
              SMC loading complex + 2
              SOSS complex 4
              SUMO activating enzyme complex 3
              THO complex + 8
              TRAMP complex 4
              Tor2-Mei2-Ste11 complex 0
              U2AF 5
              XRCC2-RAD51D complex 0
              activated SUMO-E1 ligase complex 0
              apolipoprotein B mRNA editing enzyme complex 1
              ascospore-type prospore nucleus 0
              assemblon 0
              carboxy-terminal domain protein kinase complex + 22
              catenin-TCF7L2 complex + 4
              dense nuclear body 0
              dosage compensation complex + 0
              exon-exon junction complex + 22
              generative cell nucleus 0
              germ cell nucleus + 35
              histone pre-mRNA 3'end processing complex 8
              integrator complex 21
              left nucleus 0
              lobed nucleus 0
              mRNA cap methyltransferase complex 2
              macronucleus 0
              megasporocyte nucleus + 0
              micronucleus 0
              microprocessor complex 2
              microsporocyte nucleus 0
              mitotic checkpoint complex + 1
              nuclear DNA-directed RNA polymerase complex + 108
              nuclear RNA-directed RNA polymerase complex 1
              nuclear aryl hydrocarbon receptor complex 0
              nuclear cyclin-dependent protein kinase holoenzyme complex + 15
              nuclear envelope + 464
              nuclear inclusion body 13
              nuclear lumen + 4045
              nuclear microtubule 1
              nuclear stress granule 5
              nuclear transcription factor complex + 200
              nuclear ubiquitin ligase complex + 43
              nucleosome disassembly/reassembly complex 0
              nucleotide-excision repair complex + 14
              nucleus lagging edge 0
              nucleus leading edge 0
              primary endosperm nucleus 0
              pronucleus + 24
              retrotransposon nucleocapsid 0
              right nucleus 0
              small nuclear ribonucleoprotein complex + 65
              spliceosomal complex + 185
              tRNA-intron endonuclease complex 5
              telomerase holoenzyme complex + 21
              transcription export complex + 16
              transcription export complex 2 5
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.