Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear pore
go back to main search page
Accession:GO:0005643 term browser browse the term
Definition:Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
Synonyms:exact_synonym: NPC;   nuclear pore complex;   nucleopore
 narrow_synonym: nuclear pore membrane protein
 alt_id: GO:0005644
 xref: NIF_Subcellular:sao220861693;   Wikipedia:Nuclear_pore


show annotations for term's descendants       view all columns           Sort by:
 
nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aaas aladin WD repeat nucleoporin JBrowse link 7 143,937,198 143,956,668 RGD:1624291
RGD:13792537
G AABR07065139.1 RGD:1600115
G Ahctf1 AT hook containing transcription factor 1 JBrowse link 13 98,023,528 98,079,138 RGD:1624291
G Bicd2 BICD cargo adaptor 2 JBrowse link 17 15,673,649 15,718,035 RGD:1624291
G Eif5a eukaryotic translation initiation factor 5A JBrowse link 10 56,527,075 56,531,615 RGD:1624291
G Kpna1 karyopherin subunit alpha 1 JBrowse link 11 67,652,573 67,717,180 RGD:13792537
G Kpna2 karyopherin subunit alpha 2 JBrowse link 10 95,200,029 95,212,111 RGD:13792537
G Kpna3 karyopherin subunit alpha 3 JBrowse link 15 41,696,356 41,770,112 RGD:13792537
G Kpna4 karyopherin subunit alpha 4 JBrowse link 2 165,684,345 165,739,874 RGD:13792537
G Kpna5 karyopherin subunit alpha 5 JBrowse link 20 32,509,573 32,573,591 RGD:13792537
G Kpna6 karyopherin subunit alpha 6 JBrowse link 5 147,852,738 147,867,600 RGD:13792537
G Kpna7 karyopherin subunit alpha 7 JBrowse link 12 11,347,631 11,378,810 RGD:13792537
G Kpnb1 karyopherin subunit beta 1 JBrowse link 10 85,096,517 85,124,641 RGD:9835011
G Lbr lamin B receptor JBrowse link 13 100,431,390 100,450,209 RGD:1600216
G LOC100359600 karyopherin alpha 2-like JBrowse link 6 10,642,705 10,644,673 RGD:13792537
G LOC500265 nucleoporin 50-like JBrowse link 4 128,264,112 128,267,776 RGD:1600115
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link 5 126,976,636 127,022,941 RGD:1624291
RGD:1600115
G Nup107 nucleoporin 107 JBrowse link 7 60,781,724 60,825,225 RGD:10401189
RGD:1624291
RGD:8553287
RGD:1600115
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:1624291
G Nup153 nucleoporin 153 JBrowse link 17 18,358,712 18,411,368 RGD:7327145
RGD:1624291
RGD:1600115
G Nup155 nucleoporin 155 JBrowse link 2 57,206,665 57,258,242 RGD:1600115
G Nup160 nucleoporin 160 JBrowse link 3 79,496,239 79,562,163 RGD:1624291
RGD:13792537
G Nup205 nucleoporin 205 JBrowse link 4 62,703,779 62,773,931 RGD:1624291
G Nup210 nucleoporin 210 JBrowse link 4 122,643,952 122,741,322 RGD:724456
RGD:13792537
G Nup210l nucleoporin 210-like JBrowse link 2 189,453,932 189,571,918 RGD:13792537
G Nup214 nucleoporin 214 JBrowse link 3
3
9,227,869
10,993,584
9,236,878
11,070,638
RGD:13792537
G Nup50 nucleoporin 50 JBrowse link 7 125,833,557 125,850,830 RGD:633381
RGD:1600115
RGD:1624291
G Nup54 nucleoporin 54 JBrowse link 14 17,123,434 17,141,832 RGD:633404
RGD:8553994
G Nup58 nucleoporin 58 JBrowse link 15 40,496,754 40,545,933 RGD:1600115
RGD:13792537
RGD:8553994
RGD:633404
G Nup62 nucleoporin 62 JBrowse link 1 100,811,140 100,827,119 RGD:1624291
RGD:1600115
RGD:8553994
G Nup88 nucleoporin 88 JBrowse link 10 57,581,828 57,606,171 RGD:633582
RGD:1624291
RGD:13792537
G Nup93 nucleoporin 93 JBrowse link 19 11,159,769 11,263,980 RGD:1600115
RGD:13792537
RGD:1624291
G Nup98 nucleoporin 98 and 96 precursor JBrowse link 1 167,213,866 167,308,851 RGD:70632
RGD:1624291
RGD:1600115
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1624291
RGD:1600115
G Nxt1 nuclear transport factor 2-like export factor 1 JBrowse link 3 142,993,658 142,996,580 RGD:1624291
G Pom121 POM121 transmembrane nucleoporin JBrowse link 12 24,316,575 24,341,943 RGD:729484
RGD:13792537
G Pom121l12 POM121 transmembrane nucleoporin-like 12 JBrowse link 14 97,686,088 97,687,756 RGD:13792537
G Pom121l2 POM121 transmembrane nucleoporin-like 2 JBrowse link 17 44,588,022 44,595,347 RGD:13792537
G Rae1 ribonucleic acid export 1 JBrowse link 3 171,012,984 171,030,392 RGD:1624291
RGD:13792537
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:9835011
G Ranbp1 RAN binding protein 1 JBrowse link 11 86,890,585 86,898,818 RGD:13792537
G Ranbp17 RAN binding protein 17 JBrowse link 10 18,139,763 18,445,347 RGD:13792537
G Ranbp2 RAN binding protein 2 JBrowse link 20
20
28,027,054
28,365,538
28,076,664
28,375,676
RGD:9835011
RGD:13792537
RGD:1624291
G Ranbp3 RAN binding protein 3 JBrowse link 9 10,344,190 10,381,415 RGD:13792537
G Rangap1 RAN GTPase activating protein 1 JBrowse link 7 122,939,266 122,967,178 RGD:9835351
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 4 145,686,186 145,699,577 RGD:10413910
G Senp2 SUMO specific peptidase 2 JBrowse link 11 82,627,973 82,664,702 RGD:1624291
RGD:1600115
G Snupn snurportin 1 JBrowse link 8 61,614,798 61,654,809 RGD:1331354
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
RGD:13792537
RGD:1600115
G Xpo4 exportin 4 JBrowse link 15 37,835,580 37,926,715 RGD:13792537
G Xpo7 exportin 7 JBrowse link 15 52,357,845 52,443,055 RGD:1624291
RGD:13792537
G Xpot exportin for tRNA JBrowse link 7 63,688,646 63,728,988 RGD:1624291
RGD:13792537
cytoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup214 nucleoporin 214 JBrowse link 3
3
9,227,869
10,993,584
9,236,878
11,070,638
RGD:1624291
nuclear pore central transport channel term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup153 nucleoporin 153 JBrowse link 17 18,358,712 18,411,368 RGD:13792537
G Nup35 nucleoporin 35 JBrowse link 3 67,866,784 67,896,828 RGD:13792537
G Nup54 nucleoporin 54 JBrowse link 14 17,123,434 17,141,832 RGD:13792537
G Nup62 nucleoporin 62 JBrowse link 1 100,811,140 100,827,119 RGD:13792537
G Nup62cl nucleoporin 62 C-terminal like JBrowse link X 111,333,274 111,390,023 RGD:13792537
G Nutf2 nuclear transport factor 2 JBrowse link 19 37,830,917 37,852,192 RGD:9831376
RGD:13792537
G Nxt1 nuclear transport factor 2-like export factor 1 JBrowse link 3 142,993,658 142,996,580 RGD:13792537
G Nxt2 nuclear transport factor 2-like export factor 2 JBrowse link X 113,509,841 113,517,112 RGD:13792537
nuclear pore cytoplasmic filaments term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07065139.2 RGD:13792537
G Gle1 GLE1 RNA export mediator JBrowse link 3 8,498,098 8,530,218 RGD:13792537
G Nup98 nucleoporin 98 and 96 precursor JBrowse link 1 167,213,866 167,308,851 RGD:13792537
G Ranbp2 RAN binding protein 2 JBrowse link 20
20
28,027,054
28,365,538
28,076,664
28,375,676
RGD:9835034
RGD:1624291
G Rangap1 RAN GTPase activating protein 1 JBrowse link 7 122,939,266 122,967,178 RGD:9835354
nuclear pore inner ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup155 nucleoporin 155 JBrowse link 2 57,206,665 57,258,242 RGD:13792537
G Nup188 nucleoporin 188 JBrowse link 3 8,852,271 8,908,608 RGD:13792537
nuclear pore nuclear basket term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cetn2 centrin 2 JBrowse link X 152,927,852 152,933,095 RGD:1624291
G Cetn3 centrin 3 JBrowse link 2 12,101,473 12,115,009 RGD:1624291
G Eny2 ENY2, transcription and export complex 2 subunit JBrowse link 7 83,348,656 83,358,430 RGD:1624291
G Mad1l1 mitotic arrest deficient 1 like 1 JBrowse link 12 16,410,083 16,721,232 RGD:1624291
G Mad2l1 mitotic arrest deficient 2 like 1 JBrowse link 4 97,530,993 97,543,179 RGD:1624291
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 20 12,879,304 12,917,069 RGD:1624291
G Nup153 nucleoporin 153 JBrowse link 17 18,358,712 18,411,368 RGD:8553300
RGD:13792537
RGD:1624291
RGD:1600115
G Nup35 nucleoporin 35 JBrowse link 3 67,866,784 67,896,828 RGD:13792537
G Nup98 nucleoporin 98 and 96 precursor JBrowse link 1 167,213,866 167,308,851 RGD:8553300
RGD:1624291
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:1624291
G Ranbp2 RAN binding protein 2 JBrowse link 20
20
28,027,054
28,365,538
28,076,664
28,375,676
RGD:1624291
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:8553300
RGD:1624291
nuclear pore outer ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07041481.1 RGD:13792537
G Ahctf1 AT hook containing transcription factor 1 JBrowse link 13 98,023,528 98,079,138 RGD:1624291
G Nup107 nucleoporin 107 JBrowse link 7 60,781,724 60,825,225 RGD:1624291
RGD:1600115
RGD:13792537
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:1624291
RGD:13792537
G Nup160 nucleoporin 160 JBrowse link 3 79,496,239 79,562,163 RGD:1624291
G Nup37 nucleoporin 37 JBrowse link 7 28,715,299 28,750,978 RGD:1624291
RGD:13792537
G Nup43 nucleoporin 43 JBrowse link 1 1,771,468 1,781,554 RGD:1624291
RGD:13792537
G Nup85 nucleoporin 85 JBrowse link 10 104,118,999 104,137,258 RGD:1600115
RGD:13792537
RGD:1624291
G Nup98 nucleoporin 98 and 96 precursor JBrowse link 1 167,213,866 167,308,851 RGD:1624291
RGD:1600115
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 4 145,686,186 145,699,577 RGD:1624291
RGD:13792537
RGD:1600115
G Seh1l SEH1-like nucleoporin JBrowse link 18 63,545,150 63,568,101 RGD:1624291
nuclear pore transmembrane ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link 5 126,976,636 127,022,941 RGD:13792537
nucleoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup153 nucleoporin 153 JBrowse link 17 18,358,712 18,411,368 RGD:729043

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19843
    protein-containing complex 5779
      nuclear pore 71
        cytoplasmic side of nuclear pore 1
        nuclear pore central transport channel 8
        nuclear pore cytoplasmic filaments 5
        nuclear pore inner ring 2
        nuclear pore linkers 0
        nuclear pore nuclear basket 12
        nuclear pore outer ring 11
        nuclear pore transmembrane ring 1
        nucleoplasmic side of nuclear pore 1
Path 2
Term Annotations click to browse term
  cellular_component 19843
    cellular anatomical entity 19457
      organelle 12557
        membrane-bounded organelle 10879
          intracellular membrane-bounded organelle 9976
            nucleus 6783
              nuclear envelope 465
                nuclear pore 71
                  cytoplasmic side of nuclear pore 1
                  nuclear pore central transport channel 8
                  nuclear pore cytoplasmic filaments 5
                  nuclear pore inner ring 2
                  nuclear pore linkers 0
                  nuclear pore nuclear basket 12
                  nuclear pore outer ring 11
                  nuclear pore transmembrane ring 1
                  nucleoplasmic side of nuclear pore 1
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.