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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear pore
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Accession:GO:0005643 term browser browse the term
Definition:Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
Synonyms:exact_synonym: NPC;   nuclear pore complex;   nucleopore
 narrow_synonym: nuclear pore membrane protein
 alt_id: GO:0005644
 xref: NIF_Subcellular:sao220861693;   Wikipedia:Nuclear_pore


show annotations for term's descendants       view all columns           Sort by:
 
nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AAAS aladin WD repeat nucleoporin JBrowse link 12 36,214,444 36,227,886 RGD:9068941
G AHCTF1 AT-hook containing transcription factor 1 JBrowse link 1 227,934,111 228,026,820 RGD:9068941
G BICD2 BICD cargo adaptor 2 JBrowse link 9 91,905,982 91,959,186 RGD:9068941
G EIF5A eukaryotic translation initiation factor 5A JBrowse link 17 7,327,363 7,333,270 RGD:9068941
G KPNB1 karyopherin subunit beta 1 JBrowse link 17 10,035,738 10,068,401 RGD:9068941
G LBR lamin B receptor JBrowse link 1 205,870,394 205,893,032 RGD:9068941
G LOC100989340 E3 SUMO-protein ligase RanBP2 JBrowse link 2A 110,010,961 110,039,769 RGD:9068941
G MX2 MX dynamin like GTPase 2 JBrowse link 21 41,024,562 41,071,653 RGD:9068941
G NDC1 NDC1 transmembrane nucleoporin JBrowse link 1 54,637,637 54,708,084 RGD:9068941
G NUP107 nucleoporin 107 JBrowse link 12 68,981,409 69,035,637 RGD:9068941
G NUP133 nucleoporin 133 JBrowse link 1 210,017,649 210,084,746 RGD:9068941
G NUP153 nucleoporin 153 JBrowse link 6 17,826,769 17,918,060 RGD:9068941
G NUP160 nucleoporin 160 JBrowse link 11 48,281,953 48,352,998 RGD:9068941
G NUP205 nucleoporin 205 JBrowse link 7 140,042,087 140,119,175 RGD:9068941
G NUP50 nucleoporin 50 JBrowse link 22 44,231,571 44,254,935 RGD:9068941
G NUP54 nucleoporin 54 JBrowse link 4 53,896,058 53,929,596 RGD:9068941
G NUP58 nucleoporin 58 JBrowse link 13 24,944,910 24,985,657 RGD:9068941
G NUP62 nucleoporin 62 JBrowse link 19 55,835,593 55,858,165 RGD:9068941
G NUP88 nucleoporin 88 JBrowse link 17 5,426,379 5,460,375 RGD:9068941
G NUP93 nucleoporin 93 JBrowse link 16 56,140,546 56,255,561 RGD:9068941
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 11 3,660,482 3,782,552 RGD:9068941
G NXF1 nuclear RNA export factor 1 JBrowse link 11 61,501,541 61,514,943 RGD:9068941
G NXT1 nuclear transport factor 2 like export factor 1 JBrowse link 20 23,643,785 23,647,856 RGD:9068941
G POM121C POM121 transmembrane nucleoporin C JBrowse link 7 80,428,639 80,454,371 RGD:9068941
G RAE1 ribonucleic acid export 1 JBrowse link 20 54,970,065 54,997,278 RGD:9068941
G RAN RAN, member RAS oncogene family JBrowse link 12 132,694,498 132,699,668 RGD:9068941
G RANGAP1 Ran GTPase activating protein 1 JBrowse link 22 40,233,357 40,286,677 RGD:9068941
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 3 10,588,644 10,608,754 RGD:9068941
G SENP2 SUMO specific peptidase 2 JBrowse link 3 191,083,159 191,129,572 RGD:9068941
G TPR translocated promoter region, nuclear basket protein JBrowse link 1 165,993,726 166,055,223 RGD:9068941
G XPO7 exportin 7 JBrowse link 8 18,152,210 18,191,617 RGD:9068941
G XPOT exportin for tRNA JBrowse link 12 24,969,881 25,016,517 RGD:9068941
cytoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUP214 nucleoporin 214 JBrowse link 9 130,893,110 131,001,305 RGD:9068941
nuclear pore central transport channel term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUTF2 nuclear transport factor 2 JBrowse link 16 67,575,435 67,601,053 RGD:9068941
nuclear pore cytoplasmic filaments term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100989340 E3 SUMO-protein ligase RanBP2 JBrowse link 2A 110,010,961 110,039,769 RGD:9068941
G RANGAP1 Ran GTPase activating protein 1 JBrowse link 22 40,233,357 40,286,677 RGD:9068941
nuclear pore nuclear basket term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CETN2 centrin 2 JBrowse link X 152,320,893 152,324,362 RGD:9068941
G CETN3 centrin 3 JBrowse link 5 25,098,973 25,114,676 RGD:9068941
G ENY2 ENY2 transcription and export complex 2 subunit JBrowse link 8 108,129,872 108,141,478 RGD:9068941
G LOC100989340 E3 SUMO-protein ligase RanBP2 JBrowse link 2A 110,010,961 110,039,769 RGD:9068941
G MAD1L1 mitotic arrest deficient 1 like 1 JBrowse link 7 2,187,104 2,604,168 RGD:9068941
G MAD2L1 mitotic arrest deficient 2 like 1 JBrowse link 4 123,397,355 123,405,535 RGD:9068941
G MCM3AP minichromosome maintenance complex component 3 associated protein JBrowse link 21 45,828,365 45,878,100 RGD:9068941
G NUP153 nucleoporin 153 JBrowse link 6 17,826,769 17,918,060 RGD:9068941
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 11 3,660,482 3,782,552 RGD:9068941
G PCID2 PCI domain containing 2 JBrowse link 13 113,388,251 113,419,523 RGD:9068941
G TPR translocated promoter region, nuclear basket protein JBrowse link 1 165,993,726 166,055,223 RGD:9068941
nuclear pore outer ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCTF1 AT-hook containing transcription factor 1 JBrowse link 1 227,934,111 228,026,820 RGD:9068941
G NUP107 nucleoporin 107 JBrowse link 12 68,981,409 69,035,637 RGD:9068941
G NUP133 nucleoporin 133 JBrowse link 1 210,017,649 210,084,746 RGD:9068941
G NUP160 nucleoporin 160 JBrowse link 11 48,281,953 48,352,998 RGD:9068941
G NUP37 nucleoporin 37 JBrowse link 12 103,059,232 103,105,066 RGD:9068941
G NUP43 nucleoporin 43 JBrowse link 6 152,245,700 152,267,747 RGD:9068941
G NUP85 nucleoporin 85 JBrowse link 17 74,715,056 74,735,706 RGD:9068941
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 11 3,660,482 3,782,552 RGD:9068941
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 3 10,588,644 10,608,754 RGD:9068941
G SEH1L SEH1 like nucleoporin JBrowse link 18 16,464,446 16,500,693 RGD:9068941
nucleoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUP153 nucleoporin 153 JBrowse link 6 17,826,769 17,918,060 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12611
    protein-containing complex 3912
      nuclear pore 45
        cytoplasmic side of nuclear pore 1
        nuclear pore central transport channel 1
        nuclear pore cytoplasmic filaments 2
        nuclear pore inner ring 0
        nuclear pore linkers 0
        nuclear pore nuclear basket 11
        nuclear pore outer ring 10
        nuclear pore transmembrane ring 0
        nucleoplasmic side of nuclear pore 1
Path 2
Term Annotations click to browse term
  cellular_component 12611
    cellular anatomical entity 12428
      organelle 9689
        membrane-bounded organelle 8601
          intracellular membrane-bounded organelle 7856
            nucleus 5405
              nuclear envelope 373
                nuclear pore 45
                  cytoplasmic side of nuclear pore 1
                  nuclear pore central transport channel 1
                  nuclear pore cytoplasmic filaments 2
                  nuclear pore inner ring 0
                  nuclear pore linkers 0
                  nuclear pore nuclear basket 11
                  nuclear pore outer ring 10
                  nuclear pore transmembrane ring 0
                  nucleoplasmic side of nuclear pore 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.