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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear pore
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Accession:GO:0005643 term browser browse the term
Definition:Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
Synonyms:exact_synonym: NPC;   nuclear pore complex;   nucleopore
 narrow_synonym: nuclear pore membrane protein
 alt_id: GO:0005644
 xref: NIF_Subcellular:sao220861693;   Wikipedia:Nuclear_pore


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nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AAAS aladin WD repeat nucleoporin JBrowse link 27 1,889,078 1,900,097 RGD:13508589
G AHCTF1 AT-hook containing transcription factor 1 JBrowse link 7 37,550,045 37,627,428 RGD:9068941
G BICD2 BICD cargo adaptor 2 JBrowse link 1 98,697,050 98,736,296 RGD:13508589
G EIF5A eukaryotic translation initiation factor 5A JBrowse link 5 32,268,103 32,272,970 RGD:9068941
G ENY2 ENY2, transcription and export complex 2 subunit JBrowse link 13 9,895,537 9,905,081 RGD:13508589
G ENY2 ENY2 transcription and export complex 2 subunit RGD:13508589
G KPNB1 karyopherin subunit beta 1 JBrowse link 9 24,004,191 24,031,370 RGD:9068941
G LBR lamin B receptor JBrowse link 7 39,289,517 39,309,026 RGD:9068941
G LOC100685083 nuclear envelope pore membrane protein POM 121-like JBrowse link 11 1,051,404 1,095,033 RGD:13508589
G LOC100688271 transcription and mRNA export factor ENY2 pseudogene JBrowse link 26 5,027,290 5,027,643 RGD:13508589
G LOC474539 E3 SUMO-protein ligase RanBP2 JBrowse link 10 35,088,175 35,181,248 RGD:13508589
G LOC489812 nuclear envelope pore membrane protein POM 121C JBrowse link 6 6,900,191 6,926,128 RGD:13508589
G MX2 MX dynamin like GTPase 2 JBrowse link 31 35,860,596 35,883,607 RGD:9068941
G NDC1 NDC1 transmembrane nucleoporin JBrowse link 5 55,161,079 55,207,969 RGD:9068941
G NUP107 nucleoporin 107 JBrowse link 10 10,838,881 10,887,347 RGD:9068941
G NUP133 nucleoporin 133 JBrowse link 4 9,751,902 9,805,796 RGD:9068941
G NUP153 nucleoporin 153 JBrowse link 35 16,517,992 16,598,472 RGD:9068941
G NUP155 nucleoporin 155 JBrowse link 4 71,340,109 71,409,286 RGD:13508589
G NUP160 nucleoporin 160 JBrowse link 18 41,859,697 41,902,677 RGD:13508589
G NUP205 nucleoporin 205 JBrowse link 16 12,609,392 12,688,871 RGD:13508589
G NUP210 nucleoporin 210 JBrowse link 20 3,635,355 3,740,689 RGD:13508589
G NUP210L nucleoporin 210 like JBrowse link 7 43,068,259 43,149,202 RGD:13508589
G NUP214 nucleoporin 214 JBrowse link 9 52,840,300 52,943,785 RGD:13508589
G NUP50 nucleoporin 50 JBrowse link 10 20,828,879 20,846,539 RGD:13508589
G NUP54 nucleoporin 54 JBrowse link 32 751,568 782,342 RGD:13508589
G NUP58 nucleoporin 58 JBrowse link 25 14,106,135 14,158,518 RGD:13508589
G NUP62 nucleoporin 62 JBrowse link 1 106,636,282 106,661,250 RGD:9068941
G NUP88 nucleoporin 88 JBrowse link 5 31,366,213 31,389,780 RGD:13508589
G NUP93 nucleoporin 93 JBrowse link 2 59,465,482 59,573,871 RGD:13508589
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 21 26,231,585 26,348,019 RGD:13508589
G NXF1 nuclear RNA export factor 1 JBrowse link 18 53,884,512 53,895,168 RGD:13508589
G NXT1 nuclear transport factor 2 like export factor 1 JBrowse link 24 295,064 299,316 RGD:9068941
G RAE1 ribonucleic acid export 1 JBrowse link 24 42,364,559 42,385,209 RGD:13508589
G RAN RAN, member RAS oncogene family JBrowse link 26 1,435,077 1,436,893 RGD:9068941
G RANBP1 RAN binding protein 1 JBrowse link 26 29,211,559 29,219,247 RGD:13508589
G RANBP17 RAN binding protein 17 JBrowse link 4 40,828,393 41,126,981 RGD:13508589
G RANBP3 RAN binding protein 3 JBrowse link 20 54,121,976 54,176,056 RGD:13508589
G RANGAP1 Ran GTPase activating protein 1 JBrowse link 10 23,953,877 23,985,622 RGD:9068941
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 20 8,041,485 8,075,078 RGD:9068941
G SENP2 SUMO specific peptidase 2 JBrowse link 34 18,325,373 18,357,152 RGD:13508589
G TPR translocated promoter region, nuclear basket protein JBrowse link 7 19,376,951 19,442,368 RGD:13508589
G XPO7 exportin 7 JBrowse link 25 35,236,794 35,277,211 RGD:13508589
G XPOT exportin for tRNA JBrowse link 10 7,121,275 7,163,692 RGD:13508589
RGD:9068941
cytoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUP214 nucleoporin 214 JBrowse link 9 52,840,300 52,943,785 RGD:13508589
nuclear pore central transport channel term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUP153 nucleoporin 153 JBrowse link 35 16,517,992 16,598,472 RGD:13508589
G NUP35 nucleoporin 35 JBrowse link 36 26,128,838 26,168,664 RGD:13508589
G NUP54 nucleoporin 54 JBrowse link 32 751,568 782,342 RGD:13508589
G NUP62CL nucleoporin 62 C-terminal like JBrowse link X 80,708,829 80,787,441 RGD:13508589
G NUTF2 nuclear transport factor 2 JBrowse link 5 81,614,916 81,632,933 RGD:9068941
G NXT2 nuclear transport factor 2 like export factor 2 JBrowse link X 82,787,663 82,794,575 RGD:13508589
nuclear pore cytoplasmic filaments term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLE1 GLE1 RNA export mediator JBrowse link 9 55,024,673 55,059,297 RGD:13508589
G LOC474539 E3 SUMO-protein ligase RanBP2 JBrowse link 10 35,088,175 35,181,248 RGD:9068941
G RANGAP1 Ran GTPase activating protein 1 JBrowse link 10 23,953,877 23,985,622 RGD:9068941
nuclear pore inner ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUP155 nucleoporin 155 JBrowse link 4 71,340,109 71,409,286 RGD:13508589
G NUP188 nucleoporin 188 JBrowse link 9 54,657,520 54,712,900 RGD:13508589
G NUP205 nucleoporin 205 JBrowse link 16 12,609,392 12,688,871 RGD:13508589
nuclear pore nuclear basket term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CETN2 centrin 2 JBrowse link X 120,714,676 120,720,012 RGD:9068941
G CETN3 centrin 3 JBrowse link 3 18,529,198 18,547,195 RGD:9068941
G ENY2 ENY2, transcription and export complex 2 subunit JBrowse link 13 9,895,537 9,905,081 RGD:9068941
G LOC474539 E3 SUMO-protein ligase RanBP2 JBrowse link 10 35,088,175 35,181,248 RGD:9068941
G MAD1L1 mitotic arrest deficient 1 like 1 JBrowse link 6 14,889,126 15,236,194 RGD:13508589
G MAD2L1 mitotic arrest deficient 2 like 1 JBrowse link 18 55,653,677 55,661,017 RGD:9068941
G MCM3AP minichromosome maintenance complex component 3 associated protein JBrowse link 31 39,507,714 39,559,855 RGD:13508589
G NUP153 nucleoporin 153 JBrowse link 35 16,517,992 16,598,472 RGD:13508589
G NUP35 nucleoporin 35 JBrowse link 36 26,128,838 26,168,664 RGD:13508589
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 21 26,231,585 26,348,019 RGD:13508589
G PCID2 PCI domain containing 2 JBrowse link 22 60,602,440 60,623,811 RGD:13508589
G TPR translocated promoter region, nuclear basket protein JBrowse link 7 19,376,951 19,442,368 RGD:13508589
nuclear pore outer ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCTF1 AT-hook containing transcription factor 1 JBrowse link 7 37,550,045 37,627,428 RGD:9068941
G NUP107 nucleoporin 107 JBrowse link 10 10,838,881 10,887,347 RGD:13508589
G NUP133 nucleoporin 133 JBrowse link 4 9,751,902 9,805,796 RGD:13508589
G NUP160 nucleoporin 160 JBrowse link 18 41,859,697 41,902,677 RGD:13508589
G NUP37 nucleoporin 37 JBrowse link 15 40,930,321 40,972,092 RGD:13508589
G NUP43 nucleoporin 43 JBrowse link 1 40,481,447 40,491,903 RGD:13508589
G NUP85 nucleoporin 85 JBrowse link 9 5,251,387 5,298,096 RGD:13508589
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 21 26,231,585 26,348,019 RGD:13508589
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 20 8,041,485 8,075,078 RGD:13508589
G SEH1L SEH1 like nucleoporin JBrowse link 7 78,352,153 78,383,546 RGD:9068941
nuclear pore transmembrane ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NDC1 NDC1 transmembrane nucleoporin JBrowse link 5 55,161,079 55,207,969 RGD:13508589
nucleoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUP153 nucleoporin 153 JBrowse link 35 16,517,992 16,598,472 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16225
    protein-containing complex 5103
      nuclear pore 59
        cytoplasmic side of nuclear pore 1
        nuclear pore central transport channel 6
        nuclear pore cytoplasmic filaments 3
        nuclear pore inner ring 3
        nuclear pore linkers 0
        nuclear pore nuclear basket 12
        nuclear pore outer ring 10
        nuclear pore transmembrane ring 1
        nucleoplasmic side of nuclear pore 1
Path 2
Term Annotations click to browse term
  cellular_component 16225
    cellular anatomical entity 16057
      organelle 11223
        membrane-bounded organelle 9921
          intracellular membrane-bounded organelle 9142
            nucleus 6261
              nuclear envelope 412
                nuclear pore 59
                  cytoplasmic side of nuclear pore 1
                  nuclear pore central transport channel 6
                  nuclear pore cytoplasmic filaments 3
                  nuclear pore inner ring 3
                  nuclear pore linkers 0
                  nuclear pore nuclear basket 12
                  nuclear pore outer ring 10
                  nuclear pore transmembrane ring 1
                  nucleoplasmic side of nuclear pore 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.