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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear pore
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Accession:GO:0005643 term browser browse the term
Definition:Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
Synonyms:exact_synonym: NPC;   nuclear pore complex;   nucleopore
 narrow_synonym: nuclear pore membrane protein
 alt_id: GO:0005644
 xref: NIF_Subcellular:sao220861693;   Wikipedia:Nuclear_pore


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nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aaas achalasia, adrenocortical insufficiency, alacrimia JBrowse link 15 102,338,247 102,350,759 RGD:2290270
G Ahctf1 AT hook containing transcription factor 1 JBrowse link 1 179,744,904 179,804,015 RGD:2290270
G Bicd2 BICD cargo adaptor 2 JBrowse link 13 49,341,549 49,387,026 RGD:2290270
G Cetn2 centrin 2 JBrowse link X 72,913,565 72,918,344 RGD:2290270
G Cetn3 centrin 3 JBrowse link 13 81,780,636 81,797,155 RGD:2290270
G Eif5a eukaryotic translation initiation factor 5A JBrowse link 11 69,916,712 69,921,958 RGD:2290270
G Eif5a2 eukaryotic translation initiation factor 5A2 JBrowse link 3 28,781,032 28,798,846 RGD:2290270
G Eny2 ENY2 transcription and export complex 2 subunit JBrowse link 15 44,428,082 44,438,256 RGD:2290270
G Gle1 GLE1 RNA export mediator (yeast) JBrowse link 2 29,935,409 29,959,432 RGD:2290270
G Kpnb1 karyopherin (importin) beta 1 JBrowse link 11 97,159,710 97,187,892 RGD:2290270
G Lbr lamin B receptor JBrowse link 1 181,815,315 181,842,401 RGD:2290270
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 10 76,468,902 76,515,859 RGD:2290270
G Myo1c myosin IC JBrowse link 11 75,650,519 75,674,643 RGD:2290270
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link 4 107,368,047 107,416,346 RGD:2290270
G Nup107 nucleoporin 107 JBrowse link 10 117,750,621 117,792,736 RGD:2290270
G Nup133 nucleoporin 133 JBrowse link 8 123,897,114 123,949,265 RGD:2290270
G Nup153 nucleoporin 153 JBrowse link 13 46,679,902 46,727,849 RGD:2290270
G Nup155 nucleoporin 155 JBrowse link 15 8,109,263 8,159,859 RGD:2290270
G Nup160 nucleoporin 160 JBrowse link 2 90,677,215 90,739,327 RGD:2290270
G Nup188 nucleoporin 188 JBrowse link 2 30,286,407 30,344,266 RGD:2290270
G Nup205 nucleoporin 205 JBrowse link 6 35,177,616 35,247,599 RGD:2290270
G Nup210 nucleoporin 210 JBrowse link 6 91,013,067 91,118,322 RGD:2290270
G Nup210l nucleoporin 210-like JBrowse link 3 90,101,007 90,212,151 RGD:2290270
G Nup214 nucleoporin 214 JBrowse link 2 31,974,408 32,053,975 RGD:2290270
G Nup35 nucleoporin 35 JBrowse link 2 80,638,812 80,660,071 RGD:2290270
G Nup37 nucleoporin 37 JBrowse link 10 88,146,976 88,178,395 RGD:2290270
G Nup43 nucleoporin 43 JBrowse link 10 7,667,504 7,678,886 RGD:2290270
G Nup50 nucleoporin 50 JBrowse link 15 84,923,428 84,942,963 RGD:2290270
G Nup54 nucleoporin 54 JBrowse link 5 92,415,540 92,435,259 RGD:2290270
G Nup62 nucleoporin 62 JBrowse link 7 44,816,088 44,831,836 RGD:2290270
G Nup85 nucleoporin 85 JBrowse link 11 115,564,432 115,583,924 RGD:2290270
G Nup88 nucleoporin 88 JBrowse link 11 70,943,058 70,969,973 RGD:2290270
G Nup93 nucleoporin 93 JBrowse link 8 94,214,564 94,328,100 RGD:2290270
G Nup98 nucleoporin 98 JBrowse link 7 102,119,400 102,210,166 RGD:2290270
G Nupl1 nucleoporin like 1 JBrowse link 14 60,205,284 60,251,479 RGD:2290270
G Nupl2 nucleoporin like 2 JBrowse link 5 24,164,963 24,184,013 RGD:2290270
G Nxf1 nuclear RNA export factor 1 JBrowse link 19 8,757,103 8,770,910 RGD:2290270
G Nxt1 NTF2-related export protein 1 JBrowse link 2 148,672,615 148,676,026 RGD:2290270
G Parp11 poly (ADP-ribose) polymerase family, member 11 JBrowse link 6 127,446,830 127,514,233 RGD:2290270
G Pom121 nuclear pore membrane protein 121 JBrowse link 5 135,376,140 135,404,841 RGD:2290270
G Pom121l12 POM121 membrane glycoprotein-like 12 JBrowse link 11 14,599,240 14,600,316 RGD:2290270
G Pom121l2 POM121 membrane glycoprotein-like 2 (rat) JBrowse link 13 21,981,181 21,988,734 RGD:2290270
G Rae1 ribonucleic acid export 1 JBrowse link 2 173,000,116 173,015,739 RGD:2290270
G Ran RAN, member RAS oncogene family JBrowse link 5 129,020,156 129,024,322 RGD:2290270
G Ranbp1 RAN binding protein 1 JBrowse link 16 18,239,979 18,248,694 RGD:2290270
G Ranbp17 RAN binding protein 17 JBrowse link 11 33,211,794 33,513,784 RGD:2290270
G Ranbp2 RAN binding protein 2 JBrowse link 10 58,446,852 58,494,155 RGD:2290270
G Ranbp3 RAN binding protein 3 JBrowse link 17 56,673,225 56,711,769 RGD:2290270
G Ranbp3l RAN binding protein 3-like JBrowse link 15 8,967,949 9,067,335 RGD:2290270
G Rangap1 RAN GTPase activating protein 1 JBrowse link 15 81,704,248 81,730,798 RGD:2290270
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 6 113,728,052 113,740,681 RGD:2290270
G Seh1l SEH1-like (S. cerevisiae JBrowse link 18 67,774,876 67,795,487 RGD:2290270
G Senp2 SUMO/sentrin specific peptidase 2 JBrowse link 16 22,009,432 22,049,269 RGD:2290270
G Tnks tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase JBrowse link 8 34,829,179 34,965,690 RGD:2290270
G Tpr translocated promoter region, nuclear basket protein JBrowse link 1 150,392,802 150,449,935 RGD:2290270
G Xpo4 exportin 4 JBrowse link 14 57,577,521 57,668,232 RGD:2290270
G Xpo7 exportin 7 JBrowse link 14 70,662,126 70,770,864 RGD:2290270
G Xpot exportin, tRNA (nuclear export receptor for tRNAs) JBrowse link 10 121,587,380 121,626,506 RGD:2290270
cytoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup214 nucleoporin 214 JBrowse link 2 31,974,408 32,053,975 RGD:2290270
nuclear pore central transport channel term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup153 nucleoporin 153 JBrowse link 13 46,679,902 46,727,849 RGD:2290270
G Nup35 nucleoporin 35 JBrowse link 2 80,638,812 80,660,071 RGD:2290270
G Nup54 nucleoporin 54 JBrowse link 5 92,415,540 92,435,259 RGD:2290270
G Nup62 nucleoporin 62 JBrowse link 7 44,816,088 44,831,836 RGD:2290270
G Nup62cl nucleoporin 62 C-terminal like JBrowse link X 140,006,802 140,062,707 RGD:2290270
G Nutf2 nuclear transport factor 2 JBrowse link 8 105,860,533 105,880,402 RGD:2290270
G Nxt1 NTF2-related export protein 1 JBrowse link 2 148,672,615 148,676,026 RGD:2290270
G Nxt2 nuclear transport factor 2-like export factor 2 JBrowse link X 142,226,770 142,239,700 RGD:2290270
nuclear pore cytoplasmic filaments term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gle1 GLE1 RNA export mediator (yeast) JBrowse link 2 29,935,409 29,959,432 RGD:2290270
G Ranbp2 RAN binding protein 2 JBrowse link 10 58,446,852 58,494,155 RGD:9068941
G Rangap1 RAN GTPase activating protein 1 JBrowse link 15 81,704,248 81,730,798 RGD:2290270
nuclear pore inner ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup155 nucleoporin 155 JBrowse link 15 8,109,263 8,159,859 RGD:2290270
G Nup188 nucleoporin 188 JBrowse link 2 30,286,407 30,344,266 RGD:2290270
G Nup205 nucleoporin 205 JBrowse link 6 35,177,616 35,247,599 RGD:2290270
nuclear pore nuclear basket term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cetn2 centrin 2 JBrowse link X 72,913,565 72,918,344 RGD:2290270
G Cetn3 centrin 3 JBrowse link 13 81,780,636 81,797,155 RGD:2290270
G Eny2 ENY2 transcription and export complex 2 subunit JBrowse link 15 44,428,082 44,438,256 RGD:2290270
G Mad1l1 MAD1 mitotic arrest deficient 1-like 1 JBrowse link 5 140,008,689 140,321,608 RGD:2290270
G Mad2l1 MAD2 mitotic arrest deficient-like 1 JBrowse link 6 66,535,221 66,541,107 RGD:2290270
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 10 76,468,902 76,515,859 RGD:2290270
G Nup153 nucleoporin 153 JBrowse link 13 46,679,902 46,727,849 RGD:2290270
G Nup35 nucleoporin 35 JBrowse link 2 80,638,812 80,660,071 RGD:2290270
G Nup98 nucleoporin 98 JBrowse link 7 102,119,400 102,210,166 RGD:2290270
G Pcid2 PCI domain containing 2 JBrowse link 8 13,075,476 13,105,343 RGD:2290270
G Ranbp2 RAN binding protein 2 JBrowse link 10 58,446,852 58,494,155 RGD:9068941
G Tpr translocated promoter region, nuclear basket protein JBrowse link 1 150,392,802 150,449,935 RGD:2290270
nuclear pore outer ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahctf1 AT hook containing transcription factor 1 JBrowse link 1 179,744,904 179,804,015 RGD:2290270
G Nup107 nucleoporin 107 JBrowse link 10 117,750,621 117,792,736 RGD:2290270
G Nup133 nucleoporin 133 JBrowse link 8 123,897,114 123,949,265 RGD:2290270
G Nup160 nucleoporin 160 JBrowse link 2 90,677,215 90,739,327 RGD:2290270
G Nup37 nucleoporin 37 JBrowse link 10 88,146,976 88,178,395 RGD:2290270
G Nup43 nucleoporin 43 JBrowse link 10 7,667,504 7,678,886 RGD:2290270
G Nup85 nucleoporin 85 JBrowse link 11 115,564,432 115,583,924 RGD:2290270
G Nup98 nucleoporin 98 JBrowse link 7 102,119,400 102,210,166 RGD:2290270
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 6 113,728,052 113,740,681 RGD:2290270
G Seh1l SEH1-like (S. cerevisiae JBrowse link 18 67,774,876 67,795,487 RGD:2290270
nuclear pore transmembrane ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link 4 107,368,047 107,416,346 RGD:2290270
nucleoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup153 nucleoporin 153 JBrowse link 13 46,679,902 46,727,849 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23077
    protein-containing complex 5480
      nuclear pore 64
        cytoplasmic side of nuclear pore 1
        nuclear pore central transport channel 8
        nuclear pore cytoplasmic filaments 3
        nuclear pore inner ring 3
        nuclear pore linkers 0
        nuclear pore nuclear basket 12
        nuclear pore outer ring 10
        nuclear pore transmembrane ring 1
        nucleoplasmic side of nuclear pore 1
Path 2
Term Annotations click to browse term
  cellular_component 23077
    cellular anatomical entity 18808
      organelle 12634
        membrane-bounded organelle 11384
          intracellular membrane-bounded organelle 10614
            nucleus 7056
              nuclear envelope 430
                nuclear pore 64
                  cytoplasmic side of nuclear pore 1
                  nuclear pore central transport channel 8
                  nuclear pore cytoplasmic filaments 3
                  nuclear pore inner ring 3
                  nuclear pore linkers 0
                  nuclear pore nuclear basket 12
                  nuclear pore outer ring 10
                  nuclear pore transmembrane ring 1
                  nucleoplasmic side of nuclear pore 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.