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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear pore
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Accession:GO:0005643 term browser browse the term
Definition:Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
Synonyms:exact_synonym: NPC;   nuclear pore complex;   nucleopore
 narrow_synonym: nuclear pore membrane protein
 alt_id: GO:0005644
 xref: NIF_Subcellular:sao220861693;   Wikipedia:Nuclear_pore


show annotations for term's descendants       view all columns           Sort by:
 
nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aaas aladin WD repeat nucleoporin JBrowse link NW_004936512 10,589,549 10,604,831 RGD:9068941
G Ahctf1 AT-hook containing transcription factor 1 JBrowse link NW_004936526 4,143,002 4,209,689 RGD:9068941
G Bicd2 BICD cargo adaptor 2 JBrowse link NW_004936487 2,287,736 2,335,674 RGD:9068941
G Eif5a eukaryotic translation initiation factor 5A JBrowse link NW_004936595 604,268 609,075 RGD:9068941
G Kpnb1 karyopherin subunit beta 1 JBrowse link NW_004936490 13,603,520 13,635,567 RGD:9068941
G Lbr lamin B receptor JBrowse link NW_004936526 2,254,463 2,282,785 RGD:9068941
G LOC101974817 E3 SUMO-protein ligase RanBP2 JBrowse link NW_004936829 261,017 333,910 RGD:9068941
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link NW_004936522 7,303,366 7,353,700 RGD:9068941
G Nup107 nucleoporin 107 JBrowse link NW_004936545 6,600,124 6,642,839 RGD:9068941
G Nup133 nucleoporin 133 JBrowse link NW_004936484 20,185,558 20,230,904 RGD:9068941
G Nup153 nucleoporin 153 JBrowse link NW_004936552 3,529,506 3,588,830 RGD:9068941
G Nup160 nucleoporin 160 JBrowse link NW_004936562 1,435,938 1,491,439 RGD:9068941
G Nup205 nucleoporin 205 JBrowse link NW_004936592 363,723 431,966 RGD:9068941
G Nup50 nucleoporin 50 JBrowse link NW_004936629 4,499,105 4,511,437 RGD:9068941
G Nup54 nucleoporin 54 JBrowse link NW_004936676 130,877 161,914 RGD:9068941
G Nup58 nucleoporin 58 JBrowse link NW_004936688 986,037 1,025,351 RGD:9068941
G Nup62 nucleoporin 62 JBrowse link NW_004936664 3,690,728 3,713,819 RGD:9068941
G Nup88 nucleoporin 88 JBrowse link NW_004936677 2,385,289 2,417,398 RGD:9068941
G Nup93 nucleoporin 93 JBrowse link NW_004936475 8,930,320 9,027,840 RGD:9068941
G Nup98 nucleoporin 98 and 96 precursor JBrowse link NW_004936498 1,112,724 1,219,790 RGD:9068941
G Nxf1 nuclear RNA export factor 1 JBrowse link NW_004936581 488,691 501,323 RGD:9068941
G Nxt1 nuclear transport factor 2 like export factor 1 JBrowse link NW_004936620 2,243,181 2,246,244 RGD:9068941
G Rae1 ribonucleic acid export 1 JBrowse link NW_004936530 200,369 219,807 RGD:9068941
G Ran RAN, member RAS oncogene family JBrowse link NW_004936660 1,669,352 1,673,972 RGD:9068941
G Rangap1 Ran GTPase activating protein 1 JBrowse link NW_004936492 595,905 626,219 RGD:9068941
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link NW_004936602 3,013,490 3,030,489 RGD:9068941
G Senp2 SUMO specific peptidase 2 JBrowse link NW_004936578 4,252,718 4,290,452 RGD:9068941
G Tpr translocated promoter region, nuclear basket protein JBrowse link NW_004936481 4,050,693 4,111,682 RGD:9068941
G Xpo7 exportin 7 JBrowse link NW_004936555 5,793,382 5,841,019 RGD:9068941
G Xpot exportin for tRNA JBrowse link NW_004936545 2,721,437 2,762,785 RGD:9068941
cytoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup214 nucleoporin 214 JBrowse link NW_004936487 17,981,402 18,067,828 RGD:9068941
nuclear pore central transport channel term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nutf2 nuclear transport factor 2 JBrowse link NW_004936475 18,214,593 18,232,406 RGD:9068941
nuclear pore cytoplasmic filaments term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC101974817 E3 SUMO-protein ligase RanBP2 JBrowse link NW_004936829 261,017 333,910 RGD:9068941
G Rangap1 Ran GTPase activating protein 1 JBrowse link NW_004936492 595,905 626,219 RGD:9068941
nuclear pore nuclear basket term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cetn2 centrin 2 JBrowse link NW_004936714 274,098 279,177 RGD:9068941
G Cetn3 centrin 3 JBrowse link NW_004936469 8,501,572 8,516,722 RGD:9068941
G Eny2 ENY2 transcription and export complex 2 subunit JBrowse link NW_004936470 35,634,650 35,649,683 RGD:9068941
G LOC101974817 E3 SUMO-protein ligase RanBP2 JBrowse link NW_004936829 261,017 333,910 RGD:9068941
G Mad1l1 mitotic arrest deficient 1 like 1 JBrowse link NW_004936754 1,842,588 1,957,116 RGD:9068941
G Mad2l1 mitotic arrest deficient 2 like 1 JBrowse link NW_004936662 92,421 98,531 RGD:9068941
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link NW_004936778 273,152 318,157 RGD:9068941
G Nup153 nucleoporin 153 JBrowse link NW_004936552 3,529,506 3,588,830 RGD:9068941
G Nup98 nucleoporin 98 and 96 precursor JBrowse link NW_004936498 1,112,724 1,219,790 RGD:9068941
G Pcid2 PCI domain containing 2 JBrowse link NW_004936472 440,440 464,116 RGD:9068941
G Tpr translocated promoter region, nuclear basket protein JBrowse link NW_004936481 4,050,693 4,111,682 RGD:9068941
nuclear pore outer ring term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahctf1 AT-hook containing transcription factor 1 JBrowse link NW_004936526 4,143,002 4,209,689 RGD:9068941
G Nup107 nucleoporin 107 JBrowse link NW_004936545 6,600,124 6,642,839 RGD:9068941
G Nup133 nucleoporin 133 JBrowse link NW_004936484 20,185,558 20,230,904 RGD:9068941
G Nup160 nucleoporin 160 JBrowse link NW_004936562 1,435,938 1,491,439 RGD:9068941
G Nup37 nucleoporin 37 JBrowse link NW_004936492 11,998,967 12,036,357 RGD:9068941
G Nup43 nucleoporin 43 JBrowse link NW_004936489 2,657,657 2,674,942 RGD:9068941
G Nup85 nucleoporin 85 JBrowse link NW_004936594 503,698 531,851 RGD:9068941
G Nup98 nucleoporin 98 and 96 precursor JBrowse link NW_004936498 1,112,724 1,219,790 RGD:9068941
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link NW_004936602 3,013,490 3,030,489 RGD:9068941
G Seh1l SEH1 like nucleoporin JBrowse link NW_004936626 2,538,655 2,562,468 RGD:9068941
nucleoplasmic side of nuclear pore term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nup153 nucleoporin 153 JBrowse link NW_004936552 3,529,506 3,588,830 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12054
    protein-containing complex 3839
      nuclear pore 43
        cytoplasmic side of nuclear pore 1
        nuclear pore central transport channel 1
        nuclear pore cytoplasmic filaments 2
        nuclear pore inner ring 0
        nuclear pore linkers 0
        nuclear pore nuclear basket 11
        nuclear pore outer ring 10
        nuclear pore transmembrane ring 0
        nucleoplasmic side of nuclear pore 1
Path 2
Term Annotations click to browse term
  cellular_component 12054
    cellular anatomical entity 11885
      organelle 9318
        membrane-bounded organelle 8263
          intracellular membrane-bounded organelle 7550
            nucleus 5193
              nuclear envelope 359
                nuclear pore 43
                  cytoplasmic side of nuclear pore 1
                  nuclear pore central transport channel 1
                  nuclear pore cytoplasmic filaments 2
                  nuclear pore inner ring 0
                  nuclear pore linkers 0
                  nuclear pore nuclear basket 11
                  nuclear pore outer ring 10
                  nuclear pore transmembrane ring 0
                  nucleoplasmic side of nuclear pore 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.