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ONTOLOGY REPORT - ANNOTATIONS


Term:U2 snRNP
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Accession:GO:0005686 term browser browse the term
Definition:A ribonucleoprotein complex that contains small nuclear RNA U2.
Comment:U2 snRNP refers to the U2 small nuclear RNA and the proteins that associate with it. U2 snRNP is not considered to be a type of spliceosomal complex by itself.
Synonyms:narrow_synonym: 17S U2 snRNP


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U2 snRNP term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Htatsf1 HIV-1 Tat specific factor 1 JBrowse link NW_004955489 8,607,649 8,622,044 RGD:9068941
G Phf5a PHD finger protein 5A JBrowse link NW_004955413 27,018,730 27,026,937 RGD:9068941
G Rbmx2 RNA binding motif protein X-linked 2 JBrowse link NW_004955473 4,654,257 4,664,419 RGD:9068941
G Sf3a1 splicing factor 3a subunit 1 JBrowse link NW_004955455 4,579,153 4,601,942 RGD:9068941
G Sf3a2 splicing factor 3a subunit 2 JBrowse link NW_004955495 5,896,648 5,904,287 RGD:9068941
G Sf3a3 splicing factor 3a subunit 3 JBrowse link NW_004955452 15,691,729 15,715,782 RGD:9068941
G Sf3b1 splicing factor 3b subunit 1 JBrowse link NW_004955403 3,134,960 3,163,395 RGD:9068941
G Sf3b2 splicing factor 3b subunit 2 JBrowse link NW_004955422 19,242,041 19,266,479 RGD:9068941
G Sf3b5 splicing factor 3b subunit 5 JBrowse link NW_004955436 16,380,412 16,381,373 RGD:9068941
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' JBrowse link NW_004955416 28,166,885 28,178,404 RGD:9068941
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link NW_004955415 13,522,638 13,530,725 RGD:9068941
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link NW_004955415 25,880,013 25,889,295 RGD:9068941
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link NW_004955402 10,283,970 10,294,869 RGD:9068941
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link NW_004955574 157,769 164,947 RGD:9068941
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link NW_004955455 8,021,946 8,045,325 RGD:9068941
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link NW_004955406 39,725,841 39,732,527 RGD:9068941
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link NW_004955424 14,844,318 14,851,720 RGD:9068941
G Snrpn small nuclear ribonucleoprotein polypeptide N JBrowse link NW_004955416 31,668,789 31,674,144 RGD:9068941
G Snurf SNRPN upstream reading frame JBrowse link NW_004955416 31,655,664 31,668,803 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 15283
    protein-containing complex 4766
      Sm-like protein family complex 69
        small nuclear ribonucleoprotein complex 61
          spliceosomal snRNP complex 55
            U2 snRNP 19
Path 2
Term Annotations click to browse term
  cellular_component 15283
    cellular anatomical entity 15156
      organelle 11927
        membrane-bounded organelle 10969
          intracellular membrane-bounded organelle 9516
            nucleus 6481
              small nuclear ribonucleoprotein complex 61
                spliceosomal snRNP complex 55
                  U2 snRNP 19
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.