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ONTOLOGY REPORT - ANNOTATIONS


Term:U2 snRNP
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Accession:GO:0005686 term browser browse the term
Definition:A ribonucleoprotein complex that contains small nuclear RNA U2.
Comment:U2 snRNP refers to the U2 small nuclear RNA and the proteins that associate with it. U2 snRNP is not considered to be a type of spliceosomal complex by itself.
Synonyms:narrow_synonym: 17S U2 snRNP


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U2 snRNP term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HTATSF1 HIV-1 Tat specific factor 1 JBrowse link X 106,848,455 106,866,540 RGD:13508589
G LOC100686524 U2 small nuclear ribonucleoprotein B''-like JBrowse link 34 35,173,550 35,174,340 RGD:13508589
G LOC102152884 small nuclear ribonucleoprotein Sm D3 pseudogene JBrowse link X 60,094,850 60,095,507 RGD:13508589
G PHF5A PHD finger protein 5A JBrowse link 10 23,798,854 23,809,024 RGD:13508589
G SF3A1 splicing factor 3a subunit 1 JBrowse link 26 23,485,551 23,504,242 RGD:13508589
G SF3A2 splicing factor 3a subunit 2 JBrowse link 20 56,789,450 56,796,004 RGD:13508589
G SF3A3 splicing factor 3a subunit 3 JBrowse link 15 4,595,812 4,620,565 RGD:13508589
G SF3B1 splicing factor 3b subunit 1 JBrowse link 37 6,922,150 6,962,474 RGD:13508589
G SF3B2 splicing factor 3b subunit 2 JBrowse link 18 51,197,924 51,212,397 RGD:13508589
G SF3B5 splicing factor 3b subunit 5 JBrowse link 1 35,558,249 35,558,998 RGD:13508589
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 3 39,777,947 39,791,256 RGD:13508589
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 24 18,673,975 18,683,315 RGD:13508589
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 24 6,106,217 6,117,369 RGD:13508589
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 7 66,407,313 66,421,193 RGD:13508589
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 109,891,253 109,896,712 RGD:13508589
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 26 28,247,878 28,263,519 RGD:13508589
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 38 515,808 521,536 RGD:13508589
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 10 68,826,250 68,836,755 RGD:13508589
G SNRPN small nuclear ribonucleoprotein polypeptide N JBrowse link 3 35,837,582 35,842,925 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 14547
    protein-containing complex 4078
      Sm-like protein family complex 69
        small nuclear ribonucleoprotein complex 58
          spliceosomal snRNP complex 55
            U2 snRNP 19
Path 2
Term Annotations click to browse term
  cellular_component 14547
    cellular anatomical entity 14400
      organelle 9046
        membrane-bounded organelle 7853
          intracellular membrane-bounded organelle 7195
            nucleus 4936
              small nuclear ribonucleoprotein complex 58
                spliceosomal snRNP complex 55
                  U2 snRNP 19
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.