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ONTOLOGY REPORT - ANNOTATIONS


Term:U2 snRNP
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Accession:GO:0005686 term browser browse the term
Definition:A ribonucleoprotein complex that contains small nuclear RNA U2.
Comment:U2 snRNP refers to the U2 small nuclear RNA and the proteins that associate with it. U2 snRNP is not considered to be a type of spliceosomal complex by itself.
Synonyms:narrow_synonym: 17S U2 snRNP


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U2 snRNP term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07042226.1 RGD:13792537
G AC096024.2 RGD:1600115
G Htatsf1 HIV-1 Tat specific factor 1 JBrowse link X 159,514,053 159,528,281 RGD:13792537
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G JBrowse link 1 91,588,215 91,588,629 RGD:13792537
G Phf5a PHD finger protein 5A JBrowse link 7 123,095,286 123,101,851 RGD:1624291
RGD:13792537
RGD:1600115
G Rbmx2 RNA binding motif protein, X-linked 2 JBrowse link X 135,550,931 135,558,440 RGD:13792537
G Sf3a1 splicing factor 3a, subunit 1 JBrowse link 14 84,393,182 84,413,931 RGD:13792537
RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:13792537
RGD:1600115
RGD:1624291
G Sf3a3 splicing factor 3a, subunit 3 JBrowse link 5 142,702,721 142,722,350 RGD:1624291
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:1624291
RGD:13792537
G Sf3b2 splicing factor 3b, subunit 2 JBrowse link 1 220,645,685 220,665,611 RGD:13792537
G Sf3b5 splicing factor 3b, subunit 5 JBrowse link 1 7,101,715 7,102,427 RGD:13792537
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 1 126,961,389 126,974,453 RGD:13792537
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 3 122,696,125 122,703,734 RGD:1601359
RGD:13792537
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 3 137,138,082 137,147,575 RGD:1624291
RGD:13792537
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 1,866,066 1,876,613 RGD:13792537
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 80,057,140 80,059,990 RGD:13792537
G Snrpd2l small nuclear ribonucleoprotein D2-like JBrowse link 20 28,872,902 28,873,434 RGD:13792537
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 20 14,080,562 14,095,644 RGD:13792537
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link 13 50,252,707 50,258,951 RGD:1600115
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link 4 118,167,267 118,174,846 RGD:13792537
G Snrpn small nuclear ribonucleoprotein polypeptide N JBrowse link 1 195,074,328 195,096,460 RGD:1601359
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19736
    protein-containing complex 5748
      Sm-like protein family complex 77
        small nuclear ribonucleoprotein complex 65
          spliceosomal snRNP complex 61
            U2 snRNP 22
Path 2
Term Annotations click to browse term
  cellular_component 19736
    cellular anatomical entity 19352
      organelle 12456
        membrane-bounded organelle 10810
          intracellular membrane-bounded organelle 9923
            nucleus 6746
              small nuclear ribonucleoprotein complex 65
                spliceosomal snRNP complex 61
                  U2 snRNP 22
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.