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ONTOLOGY REPORT - ANNOTATIONS


Term:small nucleolar ribonucleoprotein complex
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Accession:GO:0005732 term browser browse the term
Definition:A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
Comment:Note that 'nucleolar' in the term name is part of the RNA family designation 'small nucleolar', and does not necessarily reflect the location of the complex.
Synonyms:exact_synonym: small nucleolar ribonucleoprotein;   snoRNP


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small nucleolar ribonucleoprotein complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
G LOC100360750 Sm protein F-like JBrowse link 13 47,380,376 47,382,933 RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:13792537
G Mphosph10 M-phase phosphoprotein 10 JBrowse link 1 125,212,869 125,229,060 RGD:1600115
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1600115
RGD:13792537
RGD:1624291
G Nop56 NOP56 ribonucleoprotein JBrowse link 3 122,803,726 122,808,564 RGD:1624291
G Nop58 NOP58 ribonucleoprotein JBrowse link 9 66,495,881 66,520,521 RGD:1624291
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link 7 34,478,331 34,485,034 RGD:1600115
box C/D snoRNP complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:13792537
G Fbll1 fibrillarin-like 1 JBrowse link 10 20,620,957 20,622,600 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G Nolc1 nucleolar and coiled-body phosphoprotein 1 JBrowse link 1 265,829,055 265,839,819 RGD:633515
G Nop56 NOP56 ribonucleoprotein JBrowse link 3 122,803,726 122,808,564 RGD:13792537
G Nop58 NOP58 ribonucleoprotein JBrowse link 9 66,495,881 66,520,521 RGD:13792537
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein JBrowse link 8 115,179,899 115,188,551 RGD:1624291
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:1624291
RGD:13792537
box H/ACA snoRNP complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:633515
RGD:13792537
RGD:633420
RGD:1624291
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:1624291
RGD:13792537
RGD:633420
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:1624291
RGD:13792537
RGD:633420
G Nolc1 nucleolar and coiled-body phosphoprotein 1 JBrowse link 1 265,829,055 265,839,819 RGD:633515
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:1624291
RGD:13792537
RGD:633420
box H/ACA telomerase RNP complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:1624291
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:1624291
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:1624291
RGD:13792537
ribonuclease MRP complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 7 73,270,403 73,298,209 RGD:1624291
RGD:13792537
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 1 94,661,127 94,669,461 RGD:13792537
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:1624291
RGD:13792537
G Pop7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link 12 22,259,713 22,260,754 RGD:1624291
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link 8 62,283,336 62,284,716 RGD:1624291
RGD:13792537
G Rpp25l ribonuclease P/MRP subunit p25 like JBrowse link 5 58,096,037 58,097,577 RGD:13792537
G Rpp30 ribonuclease P/MRP subunit p30 JBrowse link 1 254,697,247 254,720,093 RGD:1624291
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:13792537

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  cellular_component 19951
    protein-containing complex 5828
      ribonucleoprotein complex 1100
        small nucleolar ribonucleoprotein complex 27
          box C/D snoRNP complex 8
          box H/ACA RNP complex + 6
          ribonuclease MRP complex 8
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.