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ONTOLOGY REPORT - ANNOTATIONS


Term:late endosome
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Accession:GO:0005770 term browser browse the term
Definition:A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
Synonyms:exact_synonym: prevacuolar compartment
 broad_synonym: PVC
 xref: NIF_Subcellular:nlx_subcell_20090702


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late endosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca5 ATP binding cassette subfamily A member 5 JBrowse link 10 98,573,226 98,645,028 RGD:1624291
RGD:13792537
RGD:1600115
G Ankrd13a ankyrin repeat domain 13a JBrowse link 12 47,558,587 47,588,486 RGD:1600115
RGD:1624291
G Ankrd13b ankyrin repeat domain 13B JBrowse link 10 62,674,416 62,691,949 RGD:1600115
RGD:1624291
G Ankrd27 ankyrin repeat domain 27 JBrowse link 1 91,857,048 91,958,763 RGD:1624291
RGD:13792537
G Ap5m1 adaptor related protein complex 5 subunit mu 1 JBrowse link 15 25,933,483 25,955,745 RGD:1624291
RGD:13792537
RGD:1600115
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 JBrowse link 3 123,754,035 123,757,349 RGD:1624291
RGD:13792537
G Apoa5 apolipoprotein A5 JBrowse link 8 50,559,079 50,561,720 RGD:1600115
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:1626382
G Arf1 ADP-ribosylation factor 1 JBrowse link 10 45,562,700 45,579,214 RGD:9684860
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:4889884
RGD:1624291
G Atp13a2 ATPase cation transporting 13A2 JBrowse link 5 159,512,208 159,531,631 RGD:1624291
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1599391
RGD:1624291
G Atp7b ATPase copper transporting beta JBrowse link 16 74,865,516 74,944,935 RGD:1599391
RGD:1624291
RGD:1600115
G Bace1 beta-secretase 1 JBrowse link 8 50,140,092 50,162,388 RGD:1600115
RGD:1624291
G Bst2 bone marrow stromal cell antigen 2 JBrowse link 16 19,938,781 19,942,353 RGD:1600115
G Cd1d1 CD1d1 molecule JBrowse link 2 186,330,298 186,333,805 RGD:1624291
G Cd63 Cd63 molecule JBrowse link 7 3,320,250 3,335,583 RGD:1624291
G Cd74 CD74 molecule JBrowse link 18 56,071,420 56,080,851 RGD:1624291
G Chid1 chitinase domain containing 1 JBrowse link 1 214,476,418 214,511,569 RGD:1624291
G Chmp2b charged multivesicular body protein 2B JBrowse link 11 2,666,405 2,692,213 RGD:1624291
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:4892661
RGD:1624291
G Clcn3 chloride voltage-gated channel 3 JBrowse link 16 32,448,821 32,520,649 RGD:1600115
RGD:1624291
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:13792537
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
RGD:1600115
G Cst7 cystatin F JBrowse link 3 146,363,913 146,373,365 RGD:1624291
G Ctns cystinosin, lysosomal cystine transporter JBrowse link 10 59,749,250 59,772,475 RGD:1624291
RGD:1600115
G Ctss cathepsin S JBrowse link 2 197,655,780 197,679,768 RGD:1624291
RGD:1600115
G Cxcr4 C-X-C motif chemokine receptor 4 JBrowse link 13 45,314,952 45,318,856 RGD:1624291
RGD:1600115
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 7 70,578,564 70,585,074 RGD:1624291
RGD:1600115
G Dennd10 DENN domain containing 10 JBrowse link 1 282,188,080 282,211,588 RGD:1624291
RGD:1600115
G Derl1 derlin 1 JBrowse link 7 97,737,176 97,759,852 RGD:1624291
RGD:1600115
G Derl2 derlin 2 JBrowse link 10 57,641,682 57,653,554 RGD:1624291
RGD:1600115
G Dync1li1 dynein cytoplasmic 1 light intermediate chain 1 JBrowse link 8 122,743,274 122,776,801 RGD:13207422
G Dync1li2 dynein, cytoplasmic 1 light intermediate chain 2 JBrowse link 19 740,007 762,897 RGD:13207422
G Dysf dysferlin JBrowse link 4 115,700,942 115,901,873 RGD:1624291
RGD:1600115
G Ecpas Ecm29 proteasome adaptor and scaffold JBrowse link 5 75,928,510 76,040,771 RGD:1624291
G Exoc8 exocyst complex component 8 JBrowse link 19 57,647,305 57,649,794 RGD:1624291
RGD:1600115
G F2r coagulation factor II (thrombin) receptor JBrowse link 2 26,118,760 26,135,340 RGD:1624291
RGD:1600115
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 JBrowse link 8 132,844,042 132,910,905 RGD:1624291
RGD:13792537
G Gja1 gap junction protein, alpha 1 JBrowse link 20 37,876,650 37,889,097 RGD:1582681
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 JBrowse link 15 19,721,292 19,734,032 RGD:1624291
RGD:1600115
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B JBrowse link 4 169,541,620 170,000,216 RGD:1600115
G Grn granulin precursor JBrowse link 10 90,377,103 90,383,207 RGD:1600115
RGD:1624291
G Hap1 huntingtin-associated protein 1 JBrowse link 10 88,257,975 88,266,210 RGD:625566
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:1624291
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1600115
RGD:1624291
G Igf2r insulin-like growth factor 2 receptor JBrowse link 1 48,176,095 48,264,482 RGD:4892338
RGD:13792537
RGD:1624291
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:1600115
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
RGD:1600115
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 1 216,293,087 216,630,339 RGD:1624291
RGD:1600115
G Kidins220 kinase D-interacting substrate 220 JBrowse link 6 44,225,142 44,322,938 RGD:8554481
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 16 81,689,576 81,714,341 RGD:1624291
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:1624291
G Lamp5 lysosomal-associated membrane protein family, member 5 JBrowse link 3 129,012,677 129,031,522 RGD:1624291
G Lamtor2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 JBrowse link 2 187,911,530 187,914,930 RGD:1624291
G Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 JBrowse link 2 243,160,821 243,173,057 RGD:1624291
G Ldlr low density lipoprotein receptor JBrowse link 8 22,750,425 22,773,305 RGD:1600115
RGD:1624291
G Lgmn legumain JBrowse link 6 126,282,246 126,308,207 RGD:1624291
RGD:1600115
G Lipc lipase C, hepatic type JBrowse link 8 77,272,582 77,398,485 RGD:1625029
G LOC100909593 class II histocompatibility antigen, M alpha chain-like JBrowse link 20 3,935,501 3,938,915 RGD:1624291
G M6pr mannose-6-phosphate receptor, cation dependent JBrowse link 4 155,084,755 155,093,896 RGD:1624291
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 JBrowse link 4 10,995,241 12,472,423 RGD:8554481
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:4892338
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:8553538
G Map2k2 mitogen activated protein kinase kinase 2 JBrowse link 7 11,458,971 11,478,520 RGD:8553538
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:8553538
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:8553538
G Mcoln1 mucolipin 1 JBrowse link 12 2,054,629 2,068,682 RGD:1624291
RGD:1600115
G Mfsd12 major facilitator superfamily domain containing 12 JBrowse link 7 11,214,832 11,223,713 RGD:1600115
RGD:1624291
G Micall1 MICAL-like 1 JBrowse link 7 120,343,900 120,375,151 RGD:1624291
RGD:1600115
G Mtm1 myotubularin 1 JBrowse link 6 18,821,821 18,840,449 RGD:1600115
RGD:1624291
G Mvb12b multivesicular body subunit 12B JBrowse link 3 12,780,196 12,944,542 RGD:1624291
RGD:13792537
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
RGD:1600115
G Nbr1 NBR1, autophagy cargo receptor JBrowse link 10 89,455,202 89,483,791 RGD:1600115
RGD:1624291
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 JBrowse link 13 70,379,346 70,559,311 RGD:1624291
RGD:1600115
G Nsg1 neuronal vesicle trafficking associated 1 JBrowse link 14 77,380,264 77,402,007 RGD:13432228
RGD:1624291
G Nsg2 neuronal vesicle trafficking associated 2 JBrowse link 10 15,867,885 15,928,169 RGD:13432228
G Ntrk1 neurotrophic receptor tyrosine kinase 1 JBrowse link 2 187,143,568 187,160,373 RGD:8554481
RGD:1624291
G Osbpl1a oxysterol binding protein-like 1A JBrowse link 18 4,097,011 4,294,136 RGD:1600115
RGD:1624291
G Parm1 prostate androgen-regulated mucin-like protein 1 JBrowse link 14 17,972,914 18,076,870 RGD:1600115
RGD:1624291
G Pcsk9 proprotein convertase subtilisin/kexin type 9 JBrowse link 5 126,031,368 126,053,726 RGD:1600115
RGD:1624291
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:1624291
RGD:1600115
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 JBrowse link 8 114,300,248 114,350,686 RGD:1624291
RGD:13792537
RGD:1600115
G Psap prosaposin JBrowse link 20 29,831,302 29,856,876 RGD:1600115
RGD:1624291
G Rab14 RAB14, member RAS oncogene family JBrowse link 3 14,373,270 14,395,357 RGD:8554557
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:1624291
RGD:1600115
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:1624291
RGD:1600115
G Rab31 RAB31, member RAS oncogene family JBrowse link 9 113,370,072 113,504,606 RGD:2316821
G Rab34 RAB34, member RAS oncogene family JBrowse link 10 65,448,111 65,452,178 RGD:1624291
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:729760
RGD:13792537
RGD:1624291
RGD:4892338
G Rab7b Rab7b, member RAS oncogene family JBrowse link 13 48,456,143 48,483,714 RGD:1624291
RGD:13792537
G Rab9a RAB9A, member RAS oncogene family JBrowse link X 29,525,256 29,547,295 RGD:1624291
RGD:13792537
G Rab9b RAB9B, member RAS oncogene family JBrowse link X 107,531,404 107,542,510 RGD:13792537
G Rap1a RAP1A, member of RAS oncogene family JBrowse link 2 208,193,950 208,215,186 RGD:8554481
G Rapgef2 Rap guanine nucleotide exchange factor 2 JBrowse link 2 177,836,191 178,057,378 RGD:1600115
RGD:1624291
G RGD1310209 similar to KIAA1324 protein JBrowse link 2 211,243,398 211,323,283 RGD:1624291
G Rhob ras homolog family member B JBrowse link 6 33,689,127 33,691,301 RGD:1624291
G Rilp Rab interacting lysosomal protein JBrowse link 10 63,658,451 63,662,428 RGD:1624291
RGD:1600115
G Rnf128 ring finger protein 128 JBrowse link X 110,789,061 110,877,964 RGD:1624291
RGD:13792537
G Rnf133 ring finger protein 133 JBrowse link 4 50,681,843 50,686,216 RGD:13792537
G Rnf148 ring finger protein 148 JBrowse link 4 50,687,159 50,693,869 RGD:13792537
G Rnf215 ring finger protein 215 JBrowse link 14 84,368,440 84,374,879 RGD:13792537
G RT1-DMa RT1 class II, locus DMa JBrowse link 20 3,935,512 3,938,915 RGD:1624291
G RT1-DMb RT1 class II, locus DMb JBrowse link 20 3,945,383 3,952,838 RGD:1624291
G Rubcn rubicon autophagy regulator JBrowse link 11 71,150,506 71,199,254 RGD:1624291
RGD:13792537
RGD:1600115
G Rufy1 RUN and FYVE domain containing 1 JBrowse link 10 35,882,805 35,927,268 RGD:1624291
G Sdf4 stromal cell derived factor 4 JBrowse link 5 173,425,922 173,444,478 RGD:2312426
RGD:1600115
RGD:1624291
G Siglec1 sialic acid binding Ig like lectin 1 JBrowse link 3 123,612,067 123,631,718 RGD:1624291
G Sla2 Src-like-adaptor 2 JBrowse link 3 152,942,838 153,004,047 RGD:1624291
RGD:1600115
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:1600115
RGD:1624291
G Slc11a2 solute carrier family 11 member 2 JBrowse link 7 142,025,812 142,062,892 RGD:1624291
G Slc30a2 solute carrier family 30 member 2 JBrowse link 5 152,559,577 152,571,800 RGD:1624291
RGD:1600115
G Slc30a3 solute carrier family 30 member 3 JBrowse link 6 26,629,752 26,650,106 RGD:1624291
G Slc30a4 solute carrier family 30 member 4 JBrowse link 3 114,805,919 114,828,154 RGD:1624291
RGD:1600115
G Slc31a1 solute carrier family 31 member 1 JBrowse link 5 78,222,504 78,249,358 RGD:1624291
RGD:1600115
G Slc31a2 solute carrier family 31 member 2 JBrowse link 5 78,120,606 78,131,111 RGD:1624291
RGD:1600115
G Slc38a9 solute carrier family 38, member 9 JBrowse link 2 44,512,556 44,592,793 RGD:1624291
RGD:1600115
G Slc9a6 solute carrier family 9 member A6 JBrowse link X 158,979,081 159,045,019 RGD:1624291
RGD:1600115
G Snx14 sorting nexin 14 JBrowse link 8 96,018,943 96,088,405 RGD:1624291
RGD:1600115
G Snx16 sorting nexin 16 JBrowse link 2 93,518,796 93,541,056 RGD:1600115
RGD:13792537
RGD:1624291
G Sppl2a signal peptide peptidase-like 2A JBrowse link 3 119,361,651 119,405,453 RGD:1624291
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1600115
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:1624291
RGD:1600115
G Stx7 syntaxin 7 JBrowse link 1 22,241,655 22,281,850 RGD:1624291
G Stx8 syntaxin 8 JBrowse link 10 54,512,922 54,753,302 RGD:1624291
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
RGD:1600115
G Tf transferrin JBrowse link 8 111,694,570 111,721,275 RGD:1624291
G Ticam2 toll-like receptor adaptor molecule 2 JBrowse link 18 40,555,106 40,572,569 RGD:1624291
G Tmem192 transmembrane protein 192 JBrowse link 16 26,620,525 26,642,537 RGD:1624291
RGD:1600115
RGD:13792537
G Tmem230 transmembrane protein 230 JBrowse link 3 124,870,867 124,879,274 RGD:1624291
RGD:1600115
G Tmem25 transmembrane protein 25 JBrowse link 8 49,100,759 49,106,258 RGD:1600115
G Tmem59 transmembrane protein 59 JBrowse link 5 126,783,061 126,804,177 RGD:1624291
RGD:13792537
RGD:1600115
G Tmem9 transmembrane protein 9 JBrowse link 13 52,854,031 52,871,300 RGD:1624291
G Trappc9 trafficking protein particle complex 9 JBrowse link 7 113,986,363 114,309,090 RGD:1624291
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:1624291
G Ttpa alpha tocopherol transfer protein JBrowse link 5 34,007,926 34,029,315 RGD:1600431
RGD:13792537
G Unc13d unc-13 homolog D JBrowse link 10 104,613,907 104,628,664 RGD:1600115
G Uvrag UV radiation resistance associated JBrowse link 1 163,844,804 164,101,568 RGD:1624291
RGD:1600115
G Vamp5 vesicle-associated membrane protein 5 JBrowse link 4 100,231,561 100,232,560 RGD:1624291
RGD:1600115
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 6 111,271,283 111,296,013 RGD:1600115
RGD:1624291
G Vps11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 8 48,677,492 48,692,295 RGD:1624291
G Vps16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 3 122,947,887 122,969,543 RGD:1624291
G Vps18 VPS18 core subunit of CORVET and HOPS complexes JBrowse link 3 111,097,352 111,108,206 RGD:1624291
RGD:1600115
G Vps26b VPS26 retromer complex component B JBrowse link 8 28,054,407 28,075,514 RGD:1624291
RGD:1600115
G Vps29 VPS29 retromer complex component JBrowse link 12 39,690,069 39,699,114 RGD:1600115
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 38,459,816 38,482,903 RGD:1624291
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1624291
G Vps35 VPS35 retromer complex component JBrowse link 19 27,464,937 27,500,636 RGD:13792537
G Vps36 vacuolar protein sorting 36 homolog JBrowse link 16 74,719,642 74,743,921 RGD:1624291
G Vps41 VPS41 subunit of HOPS complex JBrowse link 17 48,643,754 48,810,633 RGD:1624291
RGD:13792537
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1624291
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 JBrowse link 4 66,012,111 66,062,160 RGD:1624291
cytoplasmic side of late endosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdip1 cell death-inducing p53 target 1 JBrowse link 10 10,966,819 10,989,937 RGD:1624291
RGD:1600115
G Litaf lipopolysaccharide-induced TNF factor JBrowse link 10 4,753,546 4,763,272 RGD:1624291
RGD:1600115
late endosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca5 ATP binding cassette subfamily A member 5 JBrowse link 10 98,573,226 98,645,028 RGD:1600115
G Abhd6 abhydrolase domain containing 6 JBrowse link 15 18,647,903 18,695,133 RGD:1600115
RGD:1624291
G Anxa2 annexin A2 JBrowse link 8 75,687,134 75,723,589 RGD:1624291
RGD:1600115
G Anxa6 annexin A6 JBrowse link 10 40,320,581 40,375,605 RGD:1600115
RGD:1624291
G Anxa8 annexin A8 JBrowse link 16 10,417,174 10,432,388 RGD:1624291
G Ap5m1 adaptor related protein complex 5 subunit mu 1 JBrowse link 15 25,933,483 25,955,745 RGD:1600115
G Arl8b ADP-ribosylation factor like GTPase 8B JBrowse link 4 140,837,745 140,881,866 RGD:1600115
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:1600115
G Baiap3 BAI1-associated protein 3 JBrowse link 10 14,601,133 14,613,881 RGD:1624291
RGD:1600115
G Cd63 Cd63 molecule JBrowse link 7 3,320,250 3,335,583 RGD:1624291
RGD:1600115
G Cd68 Cd68 molecule JBrowse link 10 56,268,726 56,270,605 RGD:13792537
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:1600115
G Chmp4c charged multivesicular body protein 4C JBrowse link 2 93,574,554 93,641,497 RGD:1600115
G Clcn3 chloride voltage-gated channel 3 JBrowse link 16 32,448,821 32,520,649 RGD:1600115
G Clcn4 chloride voltage-gated channel 4 JBrowse link X 25,016,177 25,082,563 RGD:1600115
G Cyb561a3 cytochrome b561 family, member A3 JBrowse link 1 226,620,933 226,642,246 RGD:1624291
RGD:1600115
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link 10 91,735,772 91,756,123 RGD:13792537
G Ifitm3 interferon induced transmembrane protein 3 JBrowse link 1 213,810,712 213,811,821 RGD:1600115
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 16 81,689,576 81,714,341 RGD:13792537
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:1624291
RGD:13792537
G Lamp3 lysosomal-associated membrane protein 3 JBrowse link 11 84,930,965 85,000,694 RGD:13792537
G Lamp5 lysosomal-associated membrane protein family, member 5 JBrowse link 3 129,012,677 129,031,522 RGD:13792537
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 JBrowse link 1 166,991,474 166,997,045 RGD:8553879
G Laptm4a lysosomal protein transmembrane 4 alpha JBrowse link 6 34,042,132 34,059,960 RGD:1624291
RGD:1600115
G Laptm4b lysosomal protein transmembrane 4 beta JBrowse link 7 72,924,911 72,968,099 RGD:1600115
RGD:1624291
G LOC100361543 RhoA activator C11orf59-like JBrowse link X 37,261,428 37,262,470 RGD:8553879
G Ltv1 LTV1 ribosome biogenesis factor JBrowse link 1 7,323,043 7,335,766 RGD:13792537
G Marchf1 membrane associated ring-CH-type finger 1 JBrowse link 16 24,998,709 25,856,327 RGD:1624291
RGD:13792537
RGD:1600115
G Marchf8 membrane associated ring-CH-type finger 8 JBrowse link 4 148,285,467 148,398,148 RGD:13792537
G Micall1 MICAL-like 1 JBrowse link 7 120,343,900 120,375,151 RGD:1600115
G Mitd1 microtubule interacting and trafficking domain containing 1 JBrowse link 9 44,472,364 44,483,723 RGD:1600115
G Mmd monocyte to macrophage differentiation-associated JBrowse link 10 77,687,964 77,783,737 RGD:1600115
G Mreg melanoregulin JBrowse link 9 79,490,058 79,559,768 RGD:1600115
RGD:1624291
G Mvb12a multivesicular body subunit 12A JBrowse link 16 19,973,611 19,978,479 RGD:1600115
G Ntrk1 neurotrophic receptor tyrosine kinase 1 JBrowse link 2 187,143,568 187,160,373 RGD:1600115
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 JBrowse link 15 27,852,152 27,855,999 RGD:1624291
RGD:1600115
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 JBrowse link 5 28,395,517 28,442,924 RGD:1624291
RGD:1600115
G Pld1 phospholipase D1 JBrowse link 2 113,651,967 113,849,403 RGD:1600115
G Pld3 phospholipase D family, member 3 JBrowse link 1 84,339,269 84,361,686 RGD:1600115
RGD:1624291
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
RGD:1600115
G Rhob ras homolog family member B JBrowse link 6 33,689,127 33,691,301 RGD:1600115
G Rmc1 regulator of MON1-CCZ1 JBrowse link 18 3,597,210 3,617,160 RGD:1624291
RGD:1600115
G Rnf13 ring finger protein 13 JBrowse link 2 147,853,423 147,948,277 RGD:1624291
RGD:1600115
G RT1-Da RT1 class II, locus Da JBrowse link 20 4,127,644 4,132,616 RGD:1624291
RGD:1600115
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:1624291
G Slc11a2 solute carrier family 11 member 2 JBrowse link 7 142,025,812 142,062,892 RGD:1580424
RGD:13792537
RGD:1600115
RGD:1624291
G Slc1a1 solute carrier family 1 member 1 JBrowse link 1 246,955,017 247,035,159 RGD:1600115
G Slc29a3 solute carrier family 29 member 3 JBrowse link 20 30,289,527 30,327,343 RGD:1600115
G Slc30a3 solute carrier family 30 member 3 JBrowse link 6 26,629,752 26,650,106 RGD:1600115
G Slc30a4 solute carrier family 30 member 4 JBrowse link 3 114,805,919 114,828,154 RGD:1600115
G Snf8 SNF8 subunit of ESCRT-II JBrowse link 10 83,856,331 83,868,621 RGD:1624291
RGD:1600115
G Snx16 sorting nexin 16 JBrowse link 2 93,518,796 93,541,056 RGD:1600115
G Sppl2a signal peptide peptidase-like 2A JBrowse link 3 119,361,651 119,405,453 RGD:1624291
RGD:1600115
G Stard3 StAR-related lipid transfer domain containing 3 JBrowse link 10 86,313,430 86,335,868 RGD:1624291
RGD:1600115
G Stard3nl STARD3 N-terminal like JBrowse link 17 47,662,553 47,696,453 RGD:1624291
RGD:1600115
G Stx7 syntaxin 7 JBrowse link 1 22,241,655 22,281,850 RGD:4892614
G Stx8 syntaxin 8 JBrowse link 10 54,512,922 54,753,302 RGD:4892614
G Tmem106b transmembrane protein 106B JBrowse link 4 39,517,679 39,534,491 RGD:1600115
G Tmem165 transmembrane protein 165 JBrowse link 14 34,503,037 34,528,262 RGD:1600115
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:1600115
G Ubxn6 UBX domain protein 6 JBrowse link 9 10,995,516 11,000,643 RGD:1624291
RGD:1600115
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:4892614
RGD:8554473
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 4 100,250,301 100,252,756 RGD:4892614
RGD:1624291
RGD:1600115
G Vps11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 8 48,677,492 48,692,295 RGD:1600115
G Vps16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 3 122,947,887 122,969,543 RGD:1600115
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 38,459,816 38,482,903 RGD:1600115
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1600115
G Vps36 vacuolar protein sorting 36 homolog JBrowse link 16 74,719,642 74,743,921 RGD:1600115
RGD:13792537
RGD:1624291
G Vps39 VPS39 subunit of HOPS complex JBrowse link 3 112,087,213 112,125,307 RGD:1624291
RGD:1600115
G Vps41 VPS41 subunit of HOPS complex JBrowse link 17 48,643,754 48,810,633 RGD:1624291
RGD:1600115
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1600115
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:13792537
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 6 102,340,261 102,353,612 RGD:1600115
RGD:13792537
RGD:1624291
G Wdr81 WD repeat domain 81 JBrowse link 10 62,273,817 62,287,213 RGD:1600115
RGD:1624291
G Wdr91 WD repeat domain 91 JBrowse link 4 62,398,073 62,438,958 RGD:1600115
RGD:1624291
G Yipf1 Yip1 domain family, member 1 JBrowse link 5 126,932,730 126,968,110 RGD:1600115
G Yipf2 Yip1 domain family, member 2 JBrowse link 8 22,621,758 22,625,959 RGD:1600115
Mon1-Ccz1 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccz1b CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated JBrowse link 12 12,638,849 12,662,371 RGD:1624291
RGD:1600115
G Mon1a MON1 homolog A, secretory trafficking associated JBrowse link 8 116,657,345 116,682,172 RGD:1624291
RGD:1600115
G Mon1b MON1 homolog B, secretory trafficking associated JBrowse link 19 45,938,433 45,946,647 RGD:1624291
RGD:1600115
G Rmc1 regulator of MON1-CCZ1 JBrowse link 18 3,597,210 3,617,160 RGD:1624291
RGD:1600115
multivesicular body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acp3 acid phosphatase 3 JBrowse link 8 112,838,574 112,884,062 RGD:2299977
G Atp13a2 ATPase cation transporting 13A2 JBrowse link 5 159,512,208 159,531,631 RGD:1624291
RGD:1600115
G Bace1 beta-secretase 1 JBrowse link 8 50,140,092 50,162,388 RGD:1624291
RGD:1600115
G Bst2 bone marrow stromal cell antigen 2 JBrowse link 16 19,938,781 19,942,353 RGD:1624291
G Cd74 CD74 molecule JBrowse link 18 56,071,420 56,080,851 RGD:1624291
RGD:1600115
G Cd79a CD79a molecule JBrowse link 1 81,763,609 81,768,039 RGD:1624291
G Chmp1a charged multivesicular body protein 1A JBrowse link 19 56,001,724 56,010,004 RGD:13792537
G Chmp2a charged multivesicular body protein 2A JBrowse link 1 65,540,808 65,543,708 RGD:13792537
G Chmp2b charged multivesicular body protein 2B JBrowse link 11 2,666,405 2,692,213 RGD:13792537
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:13792537
G Crhbp corticotropin releasing hormone binding protein JBrowse link 2 25,141,471 25,153,334 RGD:5490549
G Crhr1 corticotropin releasing hormone receptor 1 JBrowse link 10 92,191,473 92,233,662 RGD:1626245
G Cst3 cystatin C JBrowse link 3 143,219,671 143,223,544 RGD:2306514
G Cst7 cystatin F JBrowse link 3 146,363,913 146,373,365 RGD:1600115
RGD:1624291
G Ctsl cathepsin L JBrowse link 17 1,873,105 1,879,266 RGD:1624291
G Ecpas Ecm29 proteasome adaptor and scaffold JBrowse link 5 75,928,510 76,040,771 RGD:1624291
G Gfra1 GDNF family receptor alpha 1 JBrowse link 1 279,203,046 279,572,789 RGD:1600115
G Gja1 gap junction protein, alpha 1 JBrowse link 20 37,876,650 37,889,097 RGD:1582681
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 16 81,689,576 81,714,341 RGD:4892636
RGD:1624291
G LOC100909593 class II histocompatibility antigen, M alpha chain-like JBrowse link 20 3,935,501 3,938,915 RGD:1624291
G Lrat lecithin retinol acyltransferase JBrowse link 2 181,896,304 181,905,366 RGD:6893660
G Rab11a RAB11a, member RAS oncogene family JBrowse link 8 70,192,975 70,215,719 RGD:1624291
RGD:1600115
G RGD1566265 similar to RIKEN cDNA 2610002M06 JBrowse link X 78,870,964 78,911,601 RGD:13792537
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:1624291
RGD:1600115
G RT1-DMa RT1 class II, locus DMa JBrowse link 20 3,935,512 3,938,915 RGD:1624291
G RT1-DMb RT1 class II, locus DMb JBrowse link 20 3,945,383 3,952,838 RGD:1624291
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:4143471
G Sftpb surfactant protein B JBrowse link 4 100,166,855 100,175,941 RGD:4143471
RGD:13792537
G Sftpc surfactant protein C JBrowse link 15 52,211,538 52,214,480 RGD:4143471
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:4143471
RGD:13792537
G Slc17a8 solute carrier family 17 member 8 JBrowse link 7 30,215,231 30,274,993 RGD:625707
G Slc2a4 solute carrier family 2 member 4 JBrowse link 10 56,552,921 56,558,562 RGD:2306204
G Sorl1 sortilin related receptor 1 JBrowse link 8 46,228,077 46,287,171 RGD:1581100
RGD:1624291
G Steap3 STEAP3 metalloreductase JBrowse link 13 36,257,220 36,274,144 RGD:1624291
RGD:1600115
G Tpt1 tumor protein, translationally-controlled 1 JBrowse link 15 57,891,680 57,894,504 RGD:1624291
G Vta1 vesicle trafficking 1 JBrowse link 1 8,830,405 8,878,191 RGD:13792537
G Zp2 zona pellucida glycoprotein 2 JBrowse link 1 189,899,906 189,911,650 RGD:1600115
RGD:1624291
multivesicular body membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd63 Cd63 molecule JBrowse link 7 3,320,250 3,335,583 RGD:1600115
RGD:1624291
G Gimap5 GTPase, IMAP family member 5 JBrowse link 4 78,377,228 78,386,683 RGD:1600115
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate JBrowse link 10 109,638,944 109,657,460 RGD:1600115
G Laptm4b lysosomal protein transmembrane 4 beta JBrowse link 7 72,924,911 72,968,099 RGD:1600115
RGD:1624291
G Nsg1 neuronal vesicle trafficking associated 1 JBrowse link 14 77,380,264 77,402,007 RGD:1600115
G Nsg2 neuronal vesicle trafficking associated 2 JBrowse link 10 15,867,885 15,928,169 RGD:1624291
RGD:1600115
G Pmel premelanosome protein JBrowse link 7 3,133,347 3,143,827 RGD:1624291
RGD:1600115
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:1624291
RGD:1600115
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:1624291
RGD:1600115
G Sorl1 sortilin related receptor 1 JBrowse link 8 46,228,077 46,287,171 RGD:1600115
multivesicular body, internal vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd63 Cd63 molecule JBrowse link 7 3,320,250 3,335,583 RGD:1600115
RGD:1624291
G Laptm4b lysosomal protein transmembrane 4 beta JBrowse link 7 72,924,911 72,968,099 RGD:1624291
RGD:1600115
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:1600115
multivesicular body, internal vesicle lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:1624291
RGD:1600115
Ragulator complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 JBrowse link 1 166,991,474 166,997,045 RGD:1624291
RGD:13792537
RGD:1600115
G Lamtor2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 JBrowse link 2 187,911,530 187,914,930 RGD:1624291
RGD:13792537
G Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 JBrowse link 2 243,160,821 243,173,057 RGD:1624291
RGD:13792537
RGD:1600115
G Lamtor4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 JBrowse link 12 19,573,909 19,577,625 RGD:1624291
RGD:13792537
G Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 JBrowse link 2 210,034,095 210,039,451 RGD:1624291
RGD:13792537
G LOC100361543 RhoA activator C11orf59-like JBrowse link X 37,261,428 37,262,470 RGD:1600115
RGD:13792537
G Slc38a9 solute carrier family 38, member 9 JBrowse link 2 44,512,556 44,592,793 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19703
    cellular anatomical entity 19322
      endomembrane system 3841
        endosome 810
          late endosome 237
            Mon1-Ccz1 complex 4
            late endosome lumen + 0
            late endosome membrane + 92
            multivesicular body + 48
Path 2
Term Annotations click to browse term
  cellular_component 19703
    cellular anatomical entity 19322
      organelle 12479
        membrane-bounded organelle 10855
          vesicle 1955
            intracellular vesicle 1812
              cytoplasmic vesicle 1807
                endosome 810
                  late endosome 237
                    Mon1-Ccz1 complex 4
                    late endosome lumen + 0
                    late endosome membrane + 92
                    multivesicular body + 48
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.