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ONTOLOGY REPORT - ANNOTATIONS


Term:vacuolar lumen
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Accession:GO:0005775 term browser browse the term
Definition:The volume enclosed within the vacuolar membrane.


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vacuolar lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cln5 CLN5, intracellular trafficking protein JBrowse link 15 93,634,815 93,644,146 RGD:1624291
acrosomal lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spata31a5 SPATA31 subfamily A member 5 JBrowse link 17 2,417,700 2,423,486 RGD:1600115
G Zp3r zona pellucida 3 receptor JBrowse link 13 47,286,375 47,331,213 RGD:1600115
azurophil granule lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prss57 serine protease 57 JBrowse link 7 12,798,310 12,804,668 RGD:1624291
RGD:1600115
G Prtn3 proteinase 3 JBrowse link 7 12,643,712 12,646,951 RGD:1624291
lysosomal lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acp2 acid phosphatase 2, lysosomal JBrowse link 3 80,020,346 80,030,365 RGD:1600115
G Cubn cubilin JBrowse link 17 80,584,921 80,807,181 RGD:2317835
G Epdr1 ependymin related 1 JBrowse link 17 47,397,558 47,422,183 RGD:1600115
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:1600115
G Gba glucosylceramidase beta JBrowse link 2 188,511,781 188,522,602 RGD:1624291
G Neu1 neuraminidase 1 JBrowse link 20 4,610,995 4,615,258 RGD:1600115
G Nsg1 neuronal vesicle trafficking associated 1 JBrowse link 14 77,380,264 77,402,007 RGD:13432228
G Nsg2 neuronal vesicle trafficking associated 2 JBrowse link 10 15,867,885 15,928,169 RGD:13432228
G Pdgfrb platelet derived growth factor receptor beta JBrowse link 18 56,364,586 56,406,381 RGD:1600115
G Plbd2 phospholipase B domain containing 2 JBrowse link 12 41,600,005 41,619,779 RGD:1600115
G Pld3 phospholipase D family, member 3 JBrowse link 1 84,339,269 84,361,686 RGD:1600115
RGD:1624291
G Scarb2 scavenger receptor class B, member 2 JBrowse link 14 17,064,173 17,115,620 RGD:1624291
lysosomal matrix term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:10059368
RGD:10412301
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:10412301

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20119
    cellular anatomical entity 19775
      cytoplasm 10968
        vacuole 585
          vacuolar lumen 19
            autophagosome lumen 0
            azurophil granule lumen 2
            cytolytic granule lumen 0
            fungal-type vacuole lumen 0
            lysosomal lumen + 16
            phagolysosome vesicle lumen 0
            plant-type vacuole lumen + 0
Path 2
Term Annotations click to browse term
  cellular_component 20119
    cellular anatomical entity 19775
      organelle 12829
        intracellular organelle 12293
          intracellular membrane-bounded organelle 10209
            vacuole 585
              vacuolar lumen 19
                autophagosome lumen 0
                azurophil granule lumen 2
                cytolytic granule lumen 0
                fungal-type vacuole lumen 0
                lysosomal lumen + 16
                phagolysosome vesicle lumen 0
                plant-type vacuole lumen + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.