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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome
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Accession:GO:0005776 term browser browse the term
Definition:A double-membrane-bounded compartment that engulfs endogenous cellular material as well as invading microorganisms to target them to the lytic vacuole/lysosome for degradation as part of macroautophagy.
Synonyms:exact_synonym: autophagic vacuole
 related_synonym: initial autophagic vacuole
 xref: NIF_Subcellular:sao8663416959


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autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006774.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:257,724,842...257,729,237 JBrowse link
G AABR07006775.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:257,747,175...257,749,708 JBrowse link
G AABR07011951.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:177,651,241...177,653,288 JBrowse link
G AABR07025818.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:51,786,459...51,787,151 JBrowse link
G AABR07033324.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:17,336,444...17,340,373 JBrowse link
G AABR07048308.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:71,999,926...72,000,318 JBrowse link
G AABR07048992.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:99,031,013...99,033,107 JBrowse link
G AABR07072668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:59,991,111...59,991,590 JBrowse link
G Atg12 autophagy related 12 ISO (PMID:24954904) RGD PMID:24954904 NCBI chr18:40,721,799...40,732,143
Ensembl chr18:40,721,800...40,732,126
JBrowse link
G Atg14 autophagy related 14 ISO
IBA
(PMID:19270696), (PMID:25686604)
PMID:21873635
RGD PMID:19270696, PMID:25686604, PMID:21873635 RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Atg16l1 autophagy related 16-like 1 ISO (MGI:MGI:2661260|PMID:12665549) RGD PMID:12665549 MGI:MGI:2661260 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228
JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT ISO (MGI:MGI:6436405|PMID:22082872) RGD PMID:22082872 MGI:MGI:6436405 NCBI chr 1:166,401,271...166,415,078
Ensembl chr 1:166,401,271...166,413,564
JBrowse link
G Atg5 autophagy related 5 ISO
IEA
(MGI:MGI:2137756|PMID:11266458)
GO_REF:0000107
(PMID:15292400)
RGD
Ensembl
PMID:11266458, PMID:15292400 GO_REF:0000107, MGI:MGI:2137756 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140
JBrowse link
G Atg9a autophagy related 9A ISO
IBA
(MGI:MGI:3581092|PMID:15755735)
PMID:21873635
RGD PMID:15755735, PMID:21873635 MGI:MGI:3581092, RGD:13792537 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382
JBrowse link
G Atg9b autophagy related 9B ISO
IBA
(MGI:MGI:3581092|PMID:15755735)
PMID:21873635
RGD PMID:15755735, PMID:21873635 MGI:MGI:3581092, RGD:13792537 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:24603074) RGD PMID:24603074 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637
JBrowse link
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor ISO
IEA
(PMID:29902443)
GO_REF:0000107
RGD
Ensembl
PMID:29902443 GO_REF:0000107 NCBI chr 4:113,887,030...113,890,103
Ensembl chr 4:113,887,115...113,890,101
JBrowse link
G Becn1 beclin 1 ISO (MGI:MGI:5499023|PMID:23798385) RGD PMID:23798385 MGI:MGI:5499023 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297
JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:83,935,087...83,963,750 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:MGI:3690270 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 ISO
IBA
(PMID:20100911)
PMID:21873635
RGD PMID:20100911, PMID:21873635 RGD:13792537 NCBI chr 8:132,844,042...132,910,905
Ensembl chr 8:132,844,043...132,911,193
JBrowse link
G Gabarap GABA type A receptor-associated protein ISO
IBA
ISS
(PMID:19056683)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:19056683, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 ISO
IBA
(PMID:15292400)
PMID:21873635
RGD PMID:15292400, PMID:21873635 RGD:13792537 NCBI chr 4:163,293,724...163,302,866
Ensembl chr 4:163,293,724...163,302,858
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:19056683), (PMID:21669198)
UniProt
RGD
PMID:19056683, PMID:21669198, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770
JBrowse link
G Gramd1a GRAM domain containing 1A IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:89,563,982...89,590,406
Ensembl chr 1:89,563,976...89,590,490
JBrowse link
G Hap1 huntingtin-associated protein 1 ISO
IEA
(MGI:MGI:5553183|PMID:24453320)
GO_REF:0000107
RGD
Ensembl
PMID:24453320 GO_REF:0000107, MGI:MGI:5553183 NCBI chr10:88,257,975...88,266,210
Ensembl chr10:88,257,976...88,266,210
JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:177,651,231...177,653,349 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:20392947, PMID:21873635 RGD:10059398, RGD:13792537 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Htt huntingtin IEA
ISO
GO_REF:0000107
(PMID:17704510)
Ensembl
RGD
PMID:17704510 GO_REF:0000107 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Il1b interleukin 1 beta IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Irgm immunity-related GTPase M ISO (MGI:MGI:3656111|PMID:16888103) RGD PMID:16888103 MGI:MGI:3656111 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928
JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:95,943,674...95,944,604
Ensembl chr19:44,164,935...44,175,770
JBrowse link
G LOC100363133 heat shock cognate 71 kDa protein-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:99,030,998...99,033,110 JBrowse link
G LOC680121 similar to heat shock protein 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:13,499,168...13,501,271
Ensembl chr11:13,499,164...13,501,263
JBrowse link
G LOC685933 hypothetical protein LOC685933 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,828,474...257,885,689
Ensembl chr 1:257,517,242...257,883,971
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA
ISO
IBA
(MGI:MGI:3581092|PMID:15755735), (MGI:MGI:5293291|PMID:21502359), (MGI:MGI:5469257|PMID:23093945), (MGI:MGI:5494529|PMID:22496425), (MGI:MGI:5582129|PMID:24713655), (MGI:MGI:5888970|PMID:27994061), (MGI:MGI:6323456|PMID:31006538)
PMID:21873635
(PMID:12740394), (PMID:15187094), (PMID:19056683), (PMID:22421968), (PMID:22456507), (PMID:24954904), (PMID:28223137)
PMID:11060023
RGD PMID:12740394, PMID:15187094, PMID:15755735, PMID:19056683, PMID:21502359, PMID:22421968, PMID:22456507, PMID:22496425, PMID:23093945, PMID:24713655, PMID:24954904, PMID:27994061, PMID:28223137, PMID:31006538, PMID:19337031, PMID:21873635, PMID:11060023 MGI:MGI:3581092, MGI:MGI:5293291, MGI:MGI:5469257, MGI:MGI:5494529, MGI:MGI:5582129, MGI:MGI:5888970, MGI:MGI:6323456, RGD:4892338, RGD:13792537, RGD:8554284 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
IEA
IBA
(MGI:MGI:5432418|PMID:22783020), (MGI:MGI:5490676|PMID:23629966)
GO_REF:0000044
PMID:21873635
(PMID:22948227), (PMID:28223137)
RGD
UniProt
PMID:22783020, PMID:22948227, PMID:23629966, PMID:28223137, PMID:21873635 GO_REF:0000044, MGI:MGI:5432418, MGI:MGI:5490676, RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058
JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519
JBrowse link
G Mapk15 mitogen-activated protein kinase 15 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22948227)
Ensembl
UniProt
RGD
PMID:22948227 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:117,041,287...117,061,799
Ensembl chr 7:117,055,395...117,061,047
JBrowse link
G Mefv MEFV innate immuity regulator, pyrin IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:12,045,813...12,056,229
Ensembl chr10:12,046,541...12,056,311
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor colocalizes_with ISO
IEA
(MGI:MGI:4818844|PMID:20616007)
GO_REF:0000044
RGD
UniProt
PMID:20616007 GO_REF:0000044, MGI:MGI:4818844 NCBI chr10:89,455,202...89,483,791
Ensembl chr10:89,459,650...89,484,080
JBrowse link
G Nrbf2 nuclear receptor binding factor 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:22,728,145...22,746,477
Ensembl chr20:22,728,208...22,746,474
JBrowse link
G Optn optineurin IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389
JBrowse link
G Osbpl7 oxysterol binding protein-like 7 ISO (PMID:21669198) RGD PMID:21669198 NCBI chr10:84,986,330...85,003,947
Ensembl chr10:84,986,328...85,004,562
JBrowse link
G Peg3 paternally expressed 3 ISO (MGI:MGI:5499023|PMID:23798385) RGD PMID:23798385 MGI:MGI:5499023 NCBI chr 1:70,210,810...70,237,450
Ensembl chr 1:70,222,964...70,237,443
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha ISO (PMID:25578879) RGD PMID:25578879 NCBI chr17:85,533,056...85,748,843 JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta ISO (PMID:25578879) RGD PMID:25578879 NCBI chr10:85,655,223...85,684,138
Ensembl chr10:85,658,324...85,684,138
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 7:70,483,948...70,498,995
Ensembl chr 7:70,483,942...70,498,995
JBrowse link
G Rab12 RAB12, member RAS oncogene family ISO (MGI:MGI:5574288|PMID:23357852) RGD PMID:23357852 MGI:MGI:5574288 NCBI chr 9:114,683,985...114,709,613
Ensembl chr 9:114,684,039...114,709,546
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO
IBA
(PMID:22452336)
PMID:21873635
RGD PMID:22452336, PMID:21873635 RGD:13792537 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Rab24 RAB24, member RAS oncogene family ISO (MGI:MGI:3852261|PMID:19368996) RGD PMID:19368996 MGI:MGI:3852261 NCBI chr17:9,837,259...9,839,464
Ensembl chr17:9,830,332...9,839,452
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:24549040)
Ensembl
UniProt
RGD
PMID:24549040, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409
JBrowse link
G Rufy4 RUN and FYVE domain containing 4 ISO
IBA
(PMID:26416964)
PMID:21873635
RGD PMID:26416964, PMID:21873635 RGD:13792537 NCBI chr 9:81,401,080...81,422,016
Ensembl chr 9:81,402,124...81,421,990
JBrowse link
G Snap29 synaptosome associated protein 29 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5805578|PMID:27628032)
Ensembl
UniProt
RGD
PMID:27628032 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5805578 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107
JBrowse link
G Sqstm1 sequestosome 1 ISO
IEA
IBA
ISS
(MGI:MGI:5582129|PMID:24713655)
GO_REF:0000044
PMID:21873635
(PMID:17580304), (PMID:19640926), (PMID:20168092), (PMID:22948227), (PMID:24954904)
GO_REF:0000024
RGD
UniProt
PMID:17580304, PMID:19640926, PMID:20168092, PMID:22948227, PMID:24713655, PMID:24954904, PMID:21873635 GO_REF:0000024, GO_REF:0000044, MGI:MGI:5582129, RGD:13792537 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294
JBrowse link
G Srpx sushi-repeat-containing protein, X-linked ISO (MGI:MGI:3852261|PMID:19368996) RGD PMID:19368996 MGI:MGI:3852261 NCBI chr  X:14,146,618...14,220,756
Ensembl chr  X:14,150,038...14,220,662
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISO
IBA
(PMID:29694889)
PMID:21873635
(MGI:MGI:5925643|PMID:29056340)
RGD PMID:29056340, PMID:29694889, PMID:21873635 MGI:MGI:5925643, RGD:13792537 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828
JBrowse link
G Stx17 syntaxin 17 ISO
ISS
(PMID:25686604)
GO_REF:0000024
(MGI:MGI:5805578|PMID:27628032)
RGD
UniProt
PMID:25686604, PMID:27628032 GO_REF:0000024, MGI:MGI:5805578 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730
JBrowse link
G Tbc1d12 TBC1 domain family, member 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,517,128...257,599,659
Ensembl chr 1:257,517,242...257,883,971
JBrowse link
G Tbc1d14 TBC1 domain family, member 14 ISO
IBA
IEA
(PMID:22613832)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:22613832, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr14:79,172,272...79,438,765
Ensembl chr14:79,205,466...79,438,764
JBrowse link
G Tbc1d25 TBC1 domain family, member 25 ISO
IBA
(PMID:21383079)
PMID:21873635
RGD PMID:21383079, PMID:21873635 RGD:13792537 NCBI chr  X:15,064,733...15,088,579
Ensembl chr  X:15,064,594...15,088,589
JBrowse link
G Tbc1d5 TBC1 domain family, member 5 ISO (PMID:22354992) RGD PMID:22354992 NCBI chr 9:1,144,641...1,747,732
Ensembl chr 9:1,145,700...1,746,397
JBrowse link
G Tmem230 transmembrane protein 230 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:124,870,867...124,879,274
Ensembl chr 3:124,870,869...124,879,216
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000044
PMID:21873635
(PMID:22421968), (PMID:22470510)
UniProt
RGD
PMID:22421968, PMID:22470510, PMID:21873635 GO_REF:0000024, GO_REF:0000044, RGD:13792537 NCBI chr 5:24,402,895...24,419,651
Ensembl chr 5:24,410,863...24,416,888
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000044
PMID:21873635
(PMID:19056683), (PMID:22470510)
UniProt
RGD
PMID:19056683, PMID:22470510, PMID:21873635 GO_REF:0000024, GO_REF:0000044, RGD:13792537 NCBI chr 3:150,910,398...150,918,525
Ensembl chr 3:150,910,398...150,918,525
JBrowse link
G Ubqln1 ubiquilin 1 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:20529957), (PMID:21143716), (PMID:23307288), (PMID:23459205)
GO_REF:0000024
(MGI:MGI:4821542|PMID:20529957)
Ensembl
RGD
UniProt
PMID:20529957, PMID:21143716, PMID:23307288, PMID:23459205, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4821542, RGD:13792537 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844
JBrowse link
G Ubqln4 ubiquilin 4 ISO (PMID:23459205) RGD PMID:23459205 NCBI chr 2:187,915,701...187,931,035
Ensembl chr 2:187,915,751...187,931,035
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (PMID:17595159), (PMID:22456507) RGD PMID:17595159, PMID:22456507 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5805578|PMID:27628032)
Ensembl
UniProt
RGD
PMID:27628032 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5805578 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A ISO
IEA
(PMID:24095276)
GO_REF:0000107
RGD
Ensembl
PMID:24095276 GO_REF:0000107 NCBI chr 1:276,310,072...276,508,635
Ensembl chr 1:276,309,927...276,490,602
JBrowse link
G Washc1 WASH complex subunit 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5519172|PMID:23974797)
Ensembl
RGD
PMID:23974797 GO_REF:0000107, MGI:MGI:5519172 NCBI chr 9:113,918,914...113,936,861
Ensembl chr 9:113,918,858...113,936,860
JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 colocalizes_with ISO (PMID:15292400)
(PMID:20168092)
RGD PMID:15292400, PMID:20168092 NCBI chr14:9,169,409...9,384,835
Ensembl chr14:9,141,512...9,381,870
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|colocalizes_with ISO (MGI:MGI:5605433|PMID:24954904)
(PMID:20505359)
RGD PMID:20505359, PMID:24954904 MGI:MGI:5605433 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 ISO (PMID:22456507) RGD PMID:22456507 NCBI chr 6:107,031,411...107,080,590
Ensembl chr 6:107,031,412...107,080,524
JBrowse link
amphisome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Sqstm1 sequestosome 1 ISO
IBA
(PMID:19640926)
PMID:21873635
RGD PMID:19640926, PMID:21873635 RGD:13792537 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294
JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:MGI:3690270 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link
G Fth1 ferritin heavy chain 1 ISO (PMID:25327288) RGD PMID:25327288 NCBI chr 1:226,030,940...226,033,228
Ensembl chr 1:226,030,938...226,033,228
JBrowse link
G Ftl1 ferritin light chain 1 ISO (PMID:25327288) RGD PMID:25327288 NCBI chr 1:101,448,190...101,450,034
Ensembl chr 1:101,448,346...101,449,829
JBrowse link
G Irgm immunity-related GTPase M ISO (MGI:MGI:3656111|PMID:16888103) RGD PMID:16888103 MGI:MGI:3656111 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 ISO (MGI:MGI:5749311|PMID:26284655) RGD PMID:26284655 MGI:MGI:5749311 NCBI chr16:81,689,576...81,714,341
Ensembl chr16:81,689,335...81,714,419
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO (PMID:25327288) RGD PMID:25327288 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha ISO (PMID:25327288) RGD PMID:25327288 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO (MGI:MGI:5749311|PMID:26284655) RGD PMID:26284655 MGI:MGI:5749311 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058
JBrowse link
G Ncoa4 nuclear receptor coactivator 4 ISO (PMID:25327288) RGD PMID:25327288 NCBI chr16:8,302,950...8,323,294
Ensembl chr16:8,302,950...8,323,293
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 ISO (PMID:25327288) RGD PMID:25327288 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895
JBrowse link
G Sqstm1 sequestosome 1 ISO (PMID:19640926)
(MGI:MGI:5749311|PMID:26284655)
RGD PMID:19640926, PMID:26284655 MGI:MGI:5749311 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294
JBrowse link
autophagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07048308.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:71,999,926...72,000,318 JBrowse link
G AABR07072668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:59,991,111...59,991,590 JBrowse link
G Atg16l1 autophagy related 16-like 1 ISO
IBA
(MGI:MGI:4880808|PMID:21220506)
PMID:21873635
RGD PMID:21220506, PMID:21873635 MGI:MGI:4880808, RGD:13792537 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228
JBrowse link
G Atg16l2 autophagy related 16-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:166,401,271...166,415,078
Ensembl chr 1:166,401,271...166,413,564
JBrowse link
G Atg9a autophagy related 9A NOT ISO (PMID:22456507) RGD PMID:22456507 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382
JBrowse link
G Atg9b autophagy related 9B IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029
JBrowse link
G Atp6ap2 ATPase H+ transporting accessory protein 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:11,137,889...11,164,854
Ensembl chr  X:11,136,939...11,164,915
JBrowse link
G Gabarap GABA type A receptor-associated protein ISO
IBA
(PMID:15169837)
PMID:21873635
RGD PMID:15169837, PMID:21873635 RGD:13792537 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:163,293,724...163,302,866
Ensembl chr 4:163,293,724...163,302,858
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 ISO
IBA
(PMID:15169837)
PMID:21873635
RGD PMID:15169837, PMID:21873635 RGD:13792537 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770
JBrowse link
G Irgm immunity-related GTPase M IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 ISO (MGI:MGI:6323456|PMID:31006538) RGD PMID:31006538 MGI:MGI:6323456 NCBI chr16:81,689,576...81,714,341
Ensembl chr16:81,689,335...81,714,419
JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:95,943,674...95,944,604
Ensembl chr19:44,164,935...44,175,770
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA
IBA
ISO
PMID:21873635
(MGI:MGI:4880808|PMID:21220506)
RGD PMID:21220506, PMID:16420522, PMID:21873635, PMID:19337031, PMID:16300744 MGI:MGI:4880808, RGD:1643189, RGD:13792537, RGD:4892338, RGD:1643207 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta IDA
IBA
PMID:21873635
PMID:15169837
RGD
GO_Central
UniProt
PMID:16300744, PMID:21873635, PMID:15169837 RGD:1643207, RGD:13792537, RGD:8553983 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058
JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519
JBrowse link
G Prkd1 protein kinase D1 ISO (PMID:22095288) RGD PMID:22095288 NCBI chr 6:71,035,017...71,349,531
Ensembl chr 6:71,035,332...71,349,249
JBrowse link
G Rab7a RAB7A, member RAS oncogene family IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 ISO (MGI:MGI:6323456|PMID:31006538) RGD PMID:31006538 MGI:MGI:6323456 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341
JBrowse link
G Rpn2 ribophorin II IDA RGD PMID:2351689 RGD:2325969 NCBI chr 3:153,398,373...153,445,633
Ensembl chr 3:153,398,130...153,445,632
JBrowse link
G Rubcnl rubicon like autophagy enhancer ISO
IBA
(PMID:28306502)
PMID:21873635
RGD PMID:28306502, PMID:21873635 RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 ISO
IEA
(PMID:17891140)
GO_REF:0000044
RGD
UniProt
PMID:17891140 GO_REF:0000044 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196
JBrowse link
G Snap29 synaptosome associated protein 29 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828
JBrowse link
G Stx17 syntaxin 17 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23217709), (PMID:26416964), (PMID:28306502)
UniProt
RGD
PMID:23217709, PMID:26416964, PMID:28306502, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730
JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:21575909), (PMID:22342342)
UniProt
RGD
PMID:21575909, PMID:22342342, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:12,374,132...12,403,382
Ensembl chr12:12,374,790...12,402,552
JBrowse link
G Tex264 testis expressed 264 ISO (PMID:31006537), (PMID:31006538)
(MGI:MGI:6323456|PMID:31006538)
RGD PMID:31006537, PMID:31006538 MGI:MGI:6323456 NCBI chr 8:115,360,706...115,388,299
Ensembl chr 8:115,360,713...115,388,266
JBrowse link
G Tm9sf1 transmembrane 9 superfamily member 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:34,314,645...34,322,172
Ensembl chr15:34,314,656...34,322,115
JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:163,844,804...164,101,568
Ensembl chr 1:163,844,818...164,101,578
JBrowse link
G Vmp1 vacuole membrane protein 1 IDA PMID:17940279 UniProt PMID:17940279 RGD:8554414 NCBI chr10:73,901,988...74,001,900
Ensembl chr10:73,902,837...74,001,895
JBrowse link
G Wdr81 WD repeat domain 81 ISO
ISS
(PMID:28404643)
GO_REF:0000024
RGD
UniProt
PMID:28404643 GO_REF:0000024 NCBI chr10:62,273,817...62,287,213
Ensembl chr10:62,273,800...62,287,189
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 ISO (PMID:17618624) RGD PMID:17618624 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525
JBrowse link
extrinsic component of autophagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 ISO (MGI:MGI:3051925|PMID:15292400) RGD PMID:15292400 MGI:MGI:3051925 NCBI chr14:9,169,409...9,384,835
Ensembl chr14:9,141,512...9,381,870
JBrowse link
integral component of autophagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:10393803) RGD PMID:10393803 NCBI chr15:51,222,954...51,250,787
Ensembl chr15:51,222,954...51,250,787
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO
IBA
(MGI:MGI:3038873|PMID:12221139)
PMID:21873635
RGD PMID:12221139, PMID:21873635 MGI:MGI:3038873, RGD:13792537 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20358
      cytoplasm 11457
        vacuole 585
          autophagosome 98
            amphisome + 2
            autolysosome 12
            autophagosome lumen 0
            autophagosome membrane + 36
Path 2
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20358
      organelle 13258
        membrane-bounded organelle 11449
          intracellular membrane-bounded organelle 10704
            vacuole 585
              autophagosome 98
                amphisome + 2
                autolysosome 12
                autophagosome lumen 0
                autophagosome membrane + 36
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.