Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum-Golgi intermediate compartment
go back to main search page
Accession:GO:0005793 term browser browse the term
Definition:A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport.
Synonyms:exact_synonym: EGTC;   ER-Golgi intermediate compartment;   ER-Golgi transport container;   ERGIC;   VTC;   endoplasmic reticulum-Golgi transport container;   pre-Golgi intermediate compartment;   vesicular-tubular cluster
 xref: Wikipedia:Vesicular-tubular_cluster


show annotations for term's descendants       view all columns           Sort by:
 
endoplasmic reticulum-Golgi intermediate compartment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anpep alanyl aminopeptidase, membrane JBrowse link 1 141,561,364 141,604,249 RGD:1600115
RGD:1624291
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 JBrowse link 1 197,855,912 197,875,038 RGD:1600115
G Ca4 carbonic anhydrase 4 JBrowse link 10 72,272,286 72,281,069 RGD:1624291
RGD:1600115
G Ccdc115 coiled-coil domain containing 115 JBrowse link 9 37,774,876 37,778,839 RGD:1624291
G Chp1 calcineurin-like EF-hand protein 1 JBrowse link 3 111,354,506 111,389,998 RGD:1600115
G Cln8 CLN8, transmembrane ER and ERGIC protein JBrowse link 16 79,828,321 79,838,212 RGD:1624291
RGD:1600115
G Cnih4 cornichon family AMPA receptor auxiliary protein 4 JBrowse link 13 99,469,382 99,490,693 RGD:1624291
G Copb1 COPI coat complex subunit beta 1 JBrowse link 1 183,695,480 183,729,569 RGD:1600115
G Copg1 COPI coat complex subunit gamma 1 JBrowse link 4 119,815,041 119,840,997 RGD:13792537
G Copg2 COPI coat complex subunit gamma 2 JBrowse link 4 58,064,394 58,195,242 RGD:13792537
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:2311247
G Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 JBrowse link 10 16,821,393 16,912,050 RGD:1624291
G Erp44 endoplasmic reticulum protein 44 JBrowse link 5 63,937,866 64,030,827 RGD:1624291
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:1600115
RGD:1624291
G Ftcd formimidoyltransferase cyclodeaminase JBrowse link 20 12,806,957 12,820,466 RGD:70743
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 JBrowse link 1 265,904,616 266,033,107 RGD:1624291
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 JBrowse link 15 19,721,292 19,734,032 RGD:1624291
RGD:13792537
G Golga3 golgin A3 JBrowse link 12 52,510,509 52,558,606 RGD:1624291
G Golgb1 golgin B1 JBrowse link 11 66,761,646 66,819,115 RGD:1624291
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1600115
G Hspa5 heat shock protein family A (Hsp70) member 5 JBrowse link 3 13,838,304 13,842,763 RGD:1624291
G Ist1 IST1 factor associated with ESCRT-III JBrowse link 19 41,968,692 41,990,843 RGD:1624291
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 JBrowse link 1 101,859,346 101,870,232 RGD:1624291
G Lman1 lectin, mannose-binding, 1 JBrowse link 18 61,683,377 61,707,344 RGD:727344
RGD:1600115
RGD:13792537
RGD:1624291
RGD:8554250
RGD:1600099
G Lman1l lectin, mannose-binding, 1 like JBrowse link 8 62,386,806 62,400,370 RGD:13792537
G Lman2 lectin, mannose-binding 2 JBrowse link 17 9,798,136 9,815,820 RGD:1624291
RGD:13792537
G LOC100363782 RAB1B, member RAS oncogene family-like RGD:1600115
G LOC102555167 ras-related protein Rab-1B-like JBrowse link 1 220,480,828 220,491,456 RGD:1600115
G LOC103689986 protein YIF1B JBrowse link 1 87,180,590 87,190,783 RGD:1624291
G Lrpap1 LDL receptor related protein associated protein 1 JBrowse link 14 80,911,281 80,923,290 RGD:1624291
RGD:1600115
G Man1a1 mannosidase, alpha, class 1A, member 1 JBrowse link 20 35,257,688 35,450,132 RGD:1624291
G Mcfd2 multiple coagulation factor deficiency 2, ER cargo receptor complex subunit JBrowse link 6 10,887,303 10,899,221 RGD:1600115
G Mgat4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A JBrowse link 9 44,033,433 44,126,946 RGD:13792537
G Mgat4b alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B JBrowse link 10 35,726,501 35,736,338 RGD:13792537
G Mgat4d MGAT4 family, member D JBrowse link 19 24,494,366 24,534,039 RGD:1624291
RGD:13792537
G Mppe1 metallophosphoesterase 1 JBrowse link 18 62,946,952 62,966,174 RGD:1600115
G Mtmr6 myotubularin related protein 6 JBrowse link 15 40,558,917 40,597,311 RGD:1600115
G Nat8 N-acetyltransferase 8 JBrowse link 4 117,525,963 117,527,443 RGD:1624291
G Nat8b N-acetyltransferase 8B JBrowse link 4 117,606,022 117,607,366 RGD:1624291
G Nucb1 nucleobindin 1 JBrowse link 1 101,480,160 101,511,029 RGD:1624291
RGD:13792537
G Nucb2 nucleobindin 2 JBrowse link 1 185,106,773 185,143,278 RGD:1624291
RGD:13792537
RGD:1600115
G P4hb prolyl 4-hydroxylase subunit beta JBrowse link 10 109,736,459 109,748,070 RGD:1624291
G Pdia6 protein disulfide isomerase family A, member 6 JBrowse link 6 42,568,269 42,585,654 RGD:708601
RGD:1624291
RGD:1600115
G Prom1 prominin 1 JBrowse link 14 71,532,321 71,637,400 RGD:1624291
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 JBrowse link 18 63,415,298 63,489,240 RGD:1624291
RGD:1600115
G Rab1b RAB1B, member RAS oncogene family JBrowse link 1 220,483,529 220,491,469 RGD:1624291
RGD:1600115
G Rab37 RAB37, member RAS oncogene family JBrowse link 10 103,643,841 103,711,830 RGD:1624291
G Rer1 retention in endoplasmic reticulum sorting receptor 1 JBrowse link 5 172,476,746 172,488,822 RGD:1624291
G Rgmb repulsive guidance molecule BMP co-receptor b JBrowse link 1 57,794,046 57,819,941 RGD:1624291
G Scyl1 SCY1 like pseudokinase 1 JBrowse link 1 221,115,992 221,129,668 RGD:1624291
RGD:1600115
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:1624291
RGD:13792537
G Serpinh1 serpin family H member 1 JBrowse link 1 164,301,010 164,308,306 RGD:1600115
RGD:1624291
G Slc35c2 solute carrier family 35 member C2 JBrowse link 3 161,801,194 161,812,318 RGD:1624291
RGD:13792537
RGD:8553345
G Stk17b serine/threonine kinase 17b JBrowse link 9 60,399,261 60,430,081 RGD:1600115
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:8553719
RGD:1624291
G Surf4 surfeit 4 JBrowse link 3 5,468,284 5,481,447 RGD:1624291
G Ticam2 toll-like receptor adaptor molecule 2 JBrowse link 18 40,555,106 40,572,569 RGD:13792537
G Tmed1 transmembrane p24 trafficking protein 1 JBrowse link 8 22,540,422 22,544,369 RGD:1624291
RGD:13792537
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:2317252
RGD:13792537
RGD:1624291
G Tmed11 transmembrane emp24 protein transport domain containing 11 JBrowse link 14 1,936,972 1,959,089 RGD:13792537
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:1624291
RGD:13792537
RGD:1600115
G Tmed3 transmembrane p24 trafficking protein 3 JBrowse link 8 97,075,194 97,083,107 RGD:1624291
RGD:13792537
RGD:1600115
G Tmed4 transmembrane p24 trafficking protein 4 JBrowse link 14 86,390,327 86,395,151 RGD:13792537
G Tmed5 transmembrane p24 trafficking protein 5 JBrowse link 14 2,613,318 2,624,773 RGD:1600115
RGD:13792537
RGD:1624291
G Tmed6 transmembrane p24 trafficking protein 6 JBrowse link 19 39,261,841 39,267,928 RGD:13792537
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:1600115
RGD:13792537
RGD:1624291
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 17 9,560,735 9,565,249 RGD:1624291
RGD:13792537
G Trappc12 trafficking protein particle complex 12 JBrowse link 6 47,954,822 48,020,280 RGD:1624291
G Trappc2b trafficking protein particle complex 2B JBrowse link 10 35,036,176 35,040,918 RGD:1600115
G Trip11 thyroid hormone receptor interactor 11 JBrowse link 6 125,741,520 125,812,926 RGD:1624291
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 JBrowse link 9 42,692,156 42,805,680 RGD:8553934
G Yif1a Yip1 interacting factor homolog A, membrane trafficking protein JBrowse link 1 220,470,070 220,474,131 RGD:1624291
RGD:13792537
G Yif1b Yip1 interacting factor homolog B, membrane trafficking protein JBrowse link 1 88,182,379 88,192,568 RGD:13792537
RGD:21201278
RGD:11342577
RGD:1624291
endoplasmic reticulum-Golgi intermediate compartment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp6ap1 ATPase H+ transporting accessory protein 1 JBrowse link X 156,407,973 156,415,053 RGD:1600115
G Azin2 antizyme inhibitor 2 JBrowse link 5 147,120,128 147,148,576 RGD:1600115
RGD:1624291
G Cln8 CLN8, transmembrane ER and ERGIC protein JBrowse link 16 79,828,321 79,838,212 RGD:1600115
G Golga2 golgin A2 JBrowse link 3 11,317,328 11,337,569 RGD:1600115
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 JBrowse link 1 101,859,346 101,870,232 RGD:1600115
G Lamp5 lysosomal-associated membrane protein family, member 5 JBrowse link 3 129,012,677 129,031,522 RGD:1624291
RGD:1600115
G Lman1 lectin, mannose-binding, 1 JBrowse link 18 61,683,377 61,707,344 RGD:1600115
G Lman1l lectin, mannose-binding, 1 like JBrowse link 8 62,386,806 62,400,370 RGD:1600115
G LOC100912478 vacuolar ATPase assembly integral membrane protein VMA21-like JBrowse link 17 35,126,955 35,134,495 RGD:1600115
G LOC103689964 vacuolar ATPase assembly integral membrane protein Vma21 JBrowse link 17 34,940,424 34,946,009 RGD:1600115
G LOC103694079 vacuolar ATPase assembly integral membrane protein Vma21-like JBrowse link 17 35,121,571 35,126,402 RGD:1600115
G Mppe1 metallophosphoesterase 1 JBrowse link 18 62,946,952 62,966,174 RGD:1600115
G Nat8 N-acetyltransferase 8 JBrowse link 4 117,525,963 117,527,443 RGD:1624291
RGD:1600115
G Nat8b N-acetyltransferase 8B JBrowse link 4 117,606,022 117,607,366 RGD:1624291
G Piezo1 piezo-type mechanosensitive ion channel component 1 JBrowse link 19 55,305,494 55,367,680 RGD:1600115
G Plpp3 phospholipid phosphatase 3 JBrowse link 5 124,690,214 124,765,499 RGD:1624291
RGD:1600115
G Rab2a RAB2A, member RAS oncogene family JBrowse link 5 21,632,654 21,696,721 RGD:1600115
G Robo1 roundabout guidance receptor 1 JBrowse link 11 9,079,291 10,146,302 RGD:1600115
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:1600115
G Sppl3 signal peptide peptidase like 3 JBrowse link 12 47,276,485 47,360,552 RGD:1624291
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:1600115
G Stx5 syntaxin 5 JBrowse link 1 224,939,497 224,955,658 RGD:1600115
G Tm6sf2 transmembrane 6 superfamily member 2 JBrowse link 16 21,092,483 21,099,695 RGD:1624291
RGD:13792537
RGD:1600115
G Tmed1 transmembrane p24 trafficking protein 1 JBrowse link 8 22,540,422 22,544,369 RGD:1600115
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:1600115
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:1600115
G Tmed3 transmembrane p24 trafficking protein 3 JBrowse link 8 97,075,194 97,083,107 RGD:1600115
G Tmed5 transmembrane p24 trafficking protein 5 JBrowse link 14 2,613,318 2,624,773 RGD:1600115
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:1600115
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 17 9,560,735 9,565,249 RGD:1600115
G Tmem199 transmembrane protein 199 JBrowse link 10 65,775,721 65,780,293 RGD:1624291
RGD:1600115
G Vma21 vacuolar ATPase assembly factor VMA21 JBrowse link 16 70,142,561 70,151,833 RGD:1600115
G Vmp1 vacuole membrane protein 1 JBrowse link 10 73,901,988 74,001,900 RGD:1600115
G Whamm WASP homolog associated with actin, golgi membranes and microtubules JBrowse link 1 143,401,986 143,430,356 RGD:1624291
RGD:13792537
integral component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 28,529,537 28,535,828 RGD:1624291
TRAPPI protein complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trappc5 trafficking protein particle complex 5 JBrowse link 12 2,228,670 2,232,973 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19843
    cellular anatomical entity 19457
      cytoplasm 10553
        endoplasmic reticulum-Golgi intermediate compartment 93
          TRAPPI protein complex 1
          endoplasmic reticulum-Golgi intermediate compartment membrane + 35
Path 2
Term Annotations click to browse term
  cellular_component 19843
    cellular anatomical entity 19457
      organelle 12557
        membrane-bounded organelle 10879
          intracellular membrane-bounded organelle 9976
            endoplasmic reticulum-Golgi intermediate compartment 93
              TRAPPI protein complex 1
              endoplasmic reticulum-Golgi intermediate compartment membrane + 35
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.