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ONTOLOGY REPORT - ANNOTATIONS


Term:Golgi lumen
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Accession:GO:0005796 term browser browse the term
Definition:The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.


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Golgi lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCC5 ATP binding cassette subfamily C member 5 JBrowse link 3 183,919,934 184,018,010 RGD:2290271
G ACAN aggrecan JBrowse link 15 88,803,436 88,875,354 RGD:2290271
G AGRN agrin JBrowse link 1 1,020,102 1,056,119 RGD:2290271
G AGRP agouti related neuropeptide JBrowse link 16 67,482,571 67,483,547 RGD:2290271
G APP amyloid beta precursor protein JBrowse link 21 25,880,550 26,171,128 RGD:2290271
G BCAN brevican JBrowse link 1 156,642,117 156,659,528 RGD:2290271
G BGLAP bone gamma-carboxyglutamate protein JBrowse link 1 156,242,184 156,243,317 RGD:2290271
G BGN biglycan JBrowse link X 153,494,980 153,509,546 RGD:2290271
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 JBrowse link 8 56,957,931 56,993,874 RGD:2290271
G CGA glycoprotein hormones, alpha polypeptide JBrowse link 6 87,085,498 87,095,106 RGD:2290271
G CSPG4 chondroitin sulfate proteoglycan 4 JBrowse link 15 75,674,322 75,712,848 RGD:2290271
G CSPG5 chondroitin sulfate proteoglycan 5 JBrowse link 3 47,562,238 47,580,240 RGD:2290271
G DAG1 dystroglycan 1 JBrowse link 3 49,468,703 49,535,618 RGD:2290271
G DCN decorin JBrowse link 12 91,140,484 91,182,817 RGD:2290271
G DEFA1 defensin alpha 1 JBrowse link 8 6,977,649 6,980,120 RGD:2290271
G DEFA1B defensin alpha 1B JBrowse link 8 6,996,766 6,999,202 RGD:2290271
G DEFA3 defensin alpha 3 JBrowse link 8 7,015,869 7,018,336 RGD:2290271
G DEFA4 defensin alpha 4 JBrowse link 8 6,935,820 6,938,306 RGD:2290271
G DEFA5 defensin alpha 5 JBrowse link 8 7,055,304 7,056,739 RGD:2290271
G DEFA6 defensin alpha 6 JBrowse link 8 6,924,697 6,926,076 RGD:2290271
G DEFB1 defensin beta 1 JBrowse link 8 6,870,592 6,877,936 RGD:2290271
G DEFB103A defensin beta 103A JBrowse link 8 7,881,392 7,882,663 RGD:2290271
G DEFB103B defensin beta 103B JBrowse link 8 7,428,888 7,430,348 RGD:2290271
G DEFB4A defensin beta 4A JBrowse link 8 7,894,677 7,896,716 RGD:2290271
G DEFB4B defensin beta 4B JBrowse link 8 7,414,863 7,416,832 RGD:2290271
G F10 coagulation factor X JBrowse link 13 113,122,799 113,149,529 RGD:2290271
G F2 coagulation factor II, thrombin JBrowse link 11 46,719,213 46,739,506 RGD:2290271
G F7 coagulation factor VII JBrowse link 13 113,105,773 113,120,685 RGD:2290271
G F9 coagulation factor IX JBrowse link X 139,530,720 139,563,459 RGD:2290271
G FGF23 fibroblast growth factor 23 JBrowse link 12 4,368,227 4,379,712 RGD:2290271
G FMOD fibromodulin JBrowse link 1 203,340,628 203,351,122 RGD:2290271
G FURIN furin, paired basic amino acid cleaving enzyme JBrowse link 15 90,868,588 90,883,457 RGD:2290271
G GAS6 growth arrest specific 6 JBrowse link 13 113,820,549 113,864,076 RGD:2290271
G GOLIM4 golgi integral membrane protein 4 JBrowse link 3 168,008,672 168,095,924 RGD:2290271
G GPC1 glypican 1 JBrowse link 2 240,435,663 240,468,076 RGD:2290271
G GPC2 glypican 2 JBrowse link 7 100,169,606 100,177,381 RGD:2290271
G GPC3 glypican 3 JBrowse link X 133,535,745 133,985,616 RGD:2290271
G GPC4 glypican 4 JBrowse link X 133,300,103 133,415,489 RGD:2290271
G GPC5 glypican 5 JBrowse link 13 91,398,621 92,867,237 RGD:2290271
G GPC6 glypican 6 JBrowse link 13 93,226,807 94,408,020 RGD:2290271
G HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 JBrowse link 4 11,393,150 11,434,398 RGD:2290271
G HSPG2 heparan sulfate proteoglycan 2 JBrowse link 1 21,822,244 21,937,310 RGD:2290271
G INS insulin JBrowse link 11 2,159,779 2,161,209 RGD:2290271
G KERA keratocan JBrowse link 12 91,050,491 91,058,024 RGD:2290271
G LALBA lactalbumin alpha JBrowse link 12 48,567,684 48,571,883 RGD:2290271
G LHB luteinizing hormone subunit beta JBrowse link 19 49,015,980 49,017,091 RGD:2290271
G LRPAP1 LDL receptor related protein associated protein 1 JBrowse link 4 3,503,597 3,532,497 RGD:2290271
G LUM lumican JBrowse link 12 91,102,629 91,111,494 RGD:2290271
G MMP11 matrix metallopeptidase 11 JBrowse link 22 23,772,849 23,784,316 RGD:2290271
G MMP14 matrix metallopeptidase 14 JBrowse link 14 22,836,585 22,847,758 RGD:2290271
G MMP16 matrix metallopeptidase 16 JBrowse link 8 88,032,009 88,327,483 RGD:2290271
G MUC1 mucin 1, cell surface associated JBrowse link 1 155,185,824 155,192,915 RGD:2290271
G MUC12 mucin 12, cell surface associated JBrowse link 7 100,969,623 101,018,949 RGD:2290271
G MUC13 mucin 13, cell surface associated JBrowse link 3 124,905,442 124,934,751 RGD:2290271
G MUC15 mucin 15, cell surface associated JBrowse link 11 26,559,032 26,572,263 RGD:2290271
G MUC16 mucin 16, cell surface associated JBrowse link 19 8,848,840 9,010,390 RGD:2290271
G MUC17 mucin 17, cell surface associated JBrowse link 7 101,020,081 101,058,859 RGD:2290271
G MUC19 mucin 19, oligomeric JBrowse link 12 40,393,394 40,570,757 RGD:2290271
G MUC2 mucin 2, oligomeric mucus/gel-forming JBrowse link 11 1,074,875 1,110,508 RGD:2290271
G MUC20 mucin 20, cell surface associated JBrowse link 3 195,720,978 195,733,551 RGD:2290271
G MUC21 mucin 21, cell surface associated JBrowse link 6 30,983,718 30,989,903 RGD:2290271
G MUC3A mucin 3A, cell surface associated JBrowse link 7 100,949,534 100,968,347 RGD:2290271
G MUC3B mucin 3B, cell surface associated RGD:2290271
G MUC4 mucin 4, cell surface associated JBrowse link 3 195,746,771 195,811,929 RGD:2290271
G MUC5AC mucin 5AC, oligomeric mucus/gel-forming JBrowse link 11 1,157,953 1,201,138 RGD:2290271
G MUC5B mucin 5B, oligomeric mucus/gel-forming JBrowse link 11 1,223,066 1,262,172 RGD:2290271
G MUC6 mucin 6, oligomeric mucus/gel-forming JBrowse link 11 1,012,823 1,036,718 RGD:2290271
G MUC7 mucin 7, secreted JBrowse link 4 70,430,492 70,482,997 RGD:2290271
G MUCL1 mucin like 1 JBrowse link 12 54,854,516 54,858,387 RGD:2290271
G NCAN neurocan JBrowse link 19 19,211,958 19,252,233 RGD:2290271
G NGF nerve growth factor JBrowse link 1 115,285,915 115,338,253 RGD:2290271
G OGN osteoglycin JBrowse link 9 92,383,268 92,404,699 RGD:2290271
G OMD osteomodulin JBrowse link 9 92,414,245 92,424,554 RGD:2290271
G PCSK5 proprotein convertase subtilisin/kexin type 5 JBrowse link 9 75,890,644 76,362,975 RGD:2290271
G PCSK6 proprotein convertase subtilisin/kexin type 6 JBrowse link 15 101,303,928 101,489,984 RGD:2290271
G PDGFA platelet derived growth factor subunit A JBrowse link 7 497,245 520,668 RGD:2290271
G PDGFB platelet derived growth factor subunit B JBrowse link 22 39,223,359 39,244,982 RGD:2290271
G PODXL2 podocalyxin like 2 JBrowse link 3 127,629,185 127,672,802 RGD:2290271
G PPIL2 peptidylprolyl isomerase like 2 JBrowse link 22 21,665,984 21,700,015 RGD:2290271
G PRELP proline and arginine rich end leucine rich repeat protein JBrowse link 1 203,475,806 203,491,352 RGD:2290271
G PROC protein C, inactivator of coagulation factors Va and VIIIa JBrowse link 2 127,418,143 127,429,246 RGD:2290271
G PROS1 protein S JBrowse link 3 93,873,051 93,973,896 RGD:2290271
G PROZ protein Z, vitamin K dependent plasma glycoprotein JBrowse link 13 113,155,864 113,172,386 RGD:2290271
G RAB33B RAB33B, member RAS oncogene family JBrowse link 4 139,453,232 139,476,609 RGD:2290271
G SDC1 syndecan 1 JBrowse link 2 20,200,797 20,225,433 RGD:2290271
G SDC2 syndecan 2 JBrowse link 8 96,493,601 96,611,790 RGD:2290271
G SDC3 syndecan 3 JBrowse link 1 30,869,466 30,909,735 RGD:2290271
G SDC4 syndecan 4 JBrowse link 20 45,325,288 45,348,424 RGD:2290271
G SDF4 stromal cell derived factor 4 JBrowse link 1 1,216,908 1,232,005 RGD:2290271
G SOD3 superoxide dismutase 3 JBrowse link 4 24,795,478 24,800,845 RGD:2290271
G TGFB1 transforming growth factor beta 1 JBrowse link 19 41,330,323 41,353,922 RGD:2290271
G UMOD uromodulin JBrowse link 16 20,333,051 20,356,301 RGD:2290271
G VCAN versican JBrowse link 5 83,471,674 83,582,303 RGD:2290271
G VTN vitronectin JBrowse link 17 28,367,284 28,370,307 RGD:2290271
G WNT1 Wnt family member 1 JBrowse link 12 48,978,322 48,982,620 RGD:2290271
G WNT3 Wnt family member 3 JBrowse link 17 46,762,506 46,818,692 RGD:2290271
G WNT3A Wnt family member 3A JBrowse link 1 228,006,998 228,067,113 RGD:2290271
G WNT4 Wnt family member 4 JBrowse link 1 22,117,308 22,143,981 RGD:2290271
G WNT5A Wnt family member 5A JBrowse link 3 55,465,715 55,505,261 RGD:2290271
G WNT5B Wnt family member 5B JBrowse link 12 1,529,856 1,647,213 RGD:2290271
G WNT6 Wnt family member 6 JBrowse link 2 218,859,805 218,874,233 RGD:2290271
G WNT7A Wnt family member 7A JBrowse link 3 13,816,258 13,880,071 RGD:2290271
G WNT7B Wnt family member 7B JBrowse link 22 45,920,362 45,977,162 RGD:2290271
G ZG16 zymogen granule protein 16 JBrowse link 16 29,760,804 29,782,973 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19244
    intracellular 14982
      cytoplasm 11960
        Golgi apparatus 1695
          Golgi lumen 104
            Golgi stack lumen 0
            trans-Golgi network transport vesicle lumen 0
Path 2
Term Annotations click to browse term
  cellular_component 19244
    cellular anatomical entity 19004
      organelle 14210
        intracellular organelle 13191
          intracellular membrane-bounded organelle 11376
            Golgi apparatus 1695
              Golgi lumen 104
                Golgi stack lumen 0
                trans-Golgi network transport vesicle lumen 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.