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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament
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Accession:GO:0005882 term browser browse the term
Definition:A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins.
Synonyms:related_synonym: intermediate filament associated protein;   type I intermediate filament associated protein;   type II intermediate filament associated protein
 xref: FMA:63851;   NIF_Subcellular:sao952483289;   Wikipedia:Intermediate_filament


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intermediate filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07034767.1 RGD:13792537
G Adora2a adenosine A2a receptor JBrowse link 20 14,265,251 14,282,873 RGD:1625443
G Bfsp1 beaded filament structural protein 1 JBrowse link 3 137,935,345 137,992,652 RGD:1600115
RGD:1624291
RGD:13792537
G Bfsp2 beaded filament structural protein 2 JBrowse link 8 111,908,614 111,965,889 RGD:1600115
RGD:1624291
G Des desmin JBrowse link 9 82,556,574 82,564,288 RGD:1624291
RGD:1600115
G Dsp desmoplakin JBrowse link 17 27,286,811 27,334,453 RGD:1624291
RGD:13792537
G Dst dystonin JBrowse link 9 37,902,336 38,296,961 RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1624291
G Evpl envoplakin JBrowse link 10 105,100,538 105,116,802 RGD:13792537
G Gfap glial fibrillary acidic protein JBrowse link 10 90,990,762 90,999,435 RGD:1624291
RGD:1600115
G Gja1 gap junction protein, alpha 1 JBrowse link 20 37,876,650 37,889,097 RGD:1624291
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:10059404
G Iffo1 intermediate filament family orphan 1 JBrowse link 4 157,659,115 157,676,335 RGD:1600115
G Iffo2 intermediate filament family orphan 2 JBrowse link 5 158,042,587 158,083,311 RGD:1600115
G Jup junction plakoglobin JBrowse link 10 88,280,517 88,307,451 RGD:1624291
G Ka11 type I keratin KA11 JBrowse link 10 88,141,667 88,144,624 RGD:1600115
G Kb23 type II keratin 23 JBrowse link 7 143,134,980 143,141,659 RGD:1303986
G Krt10 keratin 10 JBrowse link 10 87,296,445 87,301,307 RGD:1600115
G Krt12 keratin 12 JBrowse link 10 87,328,547 87,336,710 RGD:1600115
G Krt14 keratin 14 JBrowse link 10 88,118,029 88,122,233 RGD:1624291
RGD:1600115
G Krt15 keratin 15 JBrowse link 10 88,046,803 88,050,622 RGD:1303986
G Krt16 keratin 16 JBrowse link 10 88,149,210 88,152,167 RGD:1624291
G Krt17 keratin 17 JBrowse link 10 88,158,993 88,163,712 RGD:1303986
RGD:1600115
G Krt18 keratin 18 JBrowse link 7 143,629,455 143,633,131 RGD:1624291
G Krt19 keratin 19 JBrowse link 10 88,055,843 88,060,560 RGD:1600115
G Krt20 keratin 20 JBrowse link 10 87,342,514 87,351,045 RGD:1600115
G Krt222 keratin 222 JBrowse link 10 87,143,200 87,154,142 RGD:1600115
G Krt23 keratin 23 JBrowse link 10 87,391,623 87,407,634 RGD:1600115
G Krt24 keratin 24 JBrowse link 10 87,190,184 87,195,075 RGD:1303986
G Krt25 keratin 25 JBrowse link 10 87,225,361 87,238,659 RGD:1600115
G Krt26 keratin 26 JBrowse link 10 87,239,722 87,248,589 RGD:1600115
G Krt27 keratin 27 JBrowse link 10 87,256,434 87,261,717 RGD:1600115
G Krt28 keratin 28 JBrowse link 10 87,276,094 87,286,753 RGD:1600115
G Krt31 keratin 31 JBrowse link 10 87,959,123 87,962,891 RGD:1600115
G Krt32 keratin 32 JBrowse link 10 87,993,569 88,000,818 RGD:1600115
G Krt34 keratin 34 JBrowse link 10 87,950,364 87,954,055 RGD:1600115
G Krt35 keratin 35 JBrowse link 10 88,006,179 88,009,576 RGD:1600115
G Krt36 keratin 36 JBrowse link 10 88,016,602 88,019,967 RGD:1600115
G Krt39 keratin 39 JBrowse link 10 87,430,850 87,437,455 RGD:1303986
RGD:1600115
G Krt40 keratin 40 JBrowse link 10 87,453,624 87,459,670 RGD:1600115
G Krt42 keratin 42 JBrowse link 10 88,165,501 88,219,966 RGD:1600115
G Krt5 keratin 5 JBrowse link 7 143,320,142 143,324,536 RGD:1624291
G Krt75 keratin 75 JBrowse link 7 143,219,012 143,228,237 RGD:1624291
G Krt76 keratin 76 JBrowse link 7 143,488,668 143,497,108 RGD:1303986
G Krt8 keratin 8 JBrowse link 7 143,596,511 143,603,745 RGD:1624291
G Krt80 keratin 80 JBrowse link 7 142,995,715 143,015,932 RGD:1624291
G Krt9 keratin 9 JBrowse link 10 88,102,519 88,107,232 RGD:1600115
G Krtap15-1 keratin associated protein 15-1 JBrowse link 11 28,780,446 28,781,270 RGD:1600115
G Lmna lamin A/C JBrowse link 2 187,842,884 187,863,552 RGD:1600115
G LOC680875 similar to dystonin isoform 1 JBrowse link 7 117,180,653 117,187,739 RGD:13792537
G Macf1 microtubule-actin crosslinking factor 1 JBrowse link 5 141,039,455 141,363,524 RGD:13792537
G Mns1 meiosis-specific nuclear structural 1 JBrowse link 8 79,054,240 79,075,119 RGD:1624291
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
RGD:1600115
G Nefh neurofilament heavy JBrowse link 14 85,181,572 85,191,557 RGD:8554743
RGD:729261
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:1624291
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:727531
G Nes nestin JBrowse link 2 187,343,109 187,352,972 RGD:632375
RGD:13792537
RGD:1600115
RGD:1624291
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:2299080
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:2299080
G Pkp2 plakophilin 2 JBrowse link 11 88,912,163 88,972,213 RGD:1624291
G Plec plectin JBrowse link 7 117,230,319 117,291,859 RGD:13792537
G Ppl periplakin JBrowse link 10 10,644,572 10,690,223 RGD:13792537
G Prph peripherin JBrowse link 7 140,742,406 140,746,197 RGD:1624291
G RGD1305207 similar to RIKEN cDNA 1700011A15 JBrowse link 7 143,096,874 143,102,737 RGD:1600115
G Slc1a4 solute carrier family 1 member 4 JBrowse link 14 104,582,884 104,612,417 RGD:1624291
G Sync syncoilin, intermediate filament protein JBrowse link 5 147,476,136 147,500,193 RGD:1600115
G Synm synemin JBrowse link 1 128,692,112 128,722,048 RGD:1302391
RGD:13792537
RGD:1624291
G Tlk2 tousled-like kinase 2 JBrowse link 10 93,410,181 93,507,277 RGD:1624291
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:1600115
RGD:1624291
keratin filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07001416.1 RGD:1600115
G AABR07006042.1 RGD:1600115
G AABR07006049.1 RGD:1600115
G AABR07006055.1 RGD:1600115
G AABR07030469.2 RGD:1600115
G AABR07044583.1 RGD:1600115
G AABR07044583.2 RGD:1600115
G AABR07072002.1 RGD:1600115
G AC099183.3 RGD:1600115
G Casp14 caspase 14 JBrowse link 7 13,938,376 13,944,286 RGD:2313178
G Csnk1a1 casein kinase 1, alpha 1 JBrowse link 18 56,887,722 56,910,610 RGD:1624291
RGD:1600115
G Eppk1 epiplakin 1 JBrowse link 7 117,163,383 117,173,741 RGD:1624291
G Fam83h family with sequence similarity 83, member H JBrowse link 7 117,062,748 117,070,936 RGD:1624291
RGD:13792537
G Fbf1 Fas binding factor 1 JBrowse link 10 104,692,791 104,718,630 RGD:1624291
G Gper1 G protein-coupled estrogen receptor 1 JBrowse link 12 17,309,122 17,315,267 RGD:1600115
RGD:1624291
G Kb15 type II keratin Kb15 JBrowse link 7 143,208,034 143,217,771 RGD:1600115
G Kb23 type II keratin 23 JBrowse link 7 143,134,980 143,141,659 RGD:1303986
G Krt1 keratin 1 JBrowse link 7 143,448,318 143,453,544 RGD:1624291
RGD:1600115
G Krt10 keratin 10 JBrowse link 10 87,296,445 87,301,307 RGD:1624291
G Krt13 keratin 13 JBrowse link 10 88,032,130 88,036,040 RGD:1624291
G Krt14 keratin 14 JBrowse link 10 88,118,029 88,122,233 RGD:1624291
RGD:633113
G Krt15 keratin 15 JBrowse link 10 88,046,803 88,050,622 RGD:1303986
G Krt17 keratin 17 JBrowse link 10 88,158,993 88,163,712 RGD:1303986
G Krt18 keratin 18 JBrowse link 7 143,629,455 143,633,131 RGD:1624319
RGD:1624291
G Krt2 keratin 2 JBrowse link 7 143,412,858 143,420,463 RGD:1624291
RGD:1600115
G Krt24 keratin 24 JBrowse link 10 87,190,184 87,195,075 RGD:1303986
G Krt39 keratin 39 JBrowse link 10 87,430,850 87,437,455 RGD:1303986
G Krt4 keratin 4 JBrowse link 7 143,517,562 143,523,522 RGD:1600115
RGD:1624291
G Krt5 keratin 5 JBrowse link 7 143,320,142 143,324,536 RGD:1302413
RGD:1600115
RGD:1624291
G Krt7 keratin 7 JBrowse link 7 143,059,731 143,075,907 RGD:1600115
G Krt71 keratin 71 JBrowse link 7 143,345,201 143,371,346 RGD:1624291
G Krt72 keratin 72 JBrowse link 7 143,382,378 143,392,818 RGD:1600115
G Krt73 keratin 73 JBrowse link 7 143,399,878 143,408,316 RGD:1600115
G Krt75 keratin 75 JBrowse link 7 143,219,012 143,228,237 RGD:1600115
G Krt76 keratin 76 JBrowse link 7 143,488,668 143,497,108 RGD:1303986
G Krt77 keratin 77 JBrowse link 7 143,461,423 143,473,794 RGD:1600115
G Krt78 keratin 78 JBrowse link 7 143,545,245 143,553,063 RGD:1600115
G Krt79 keratin 79 JBrowse link 7 143,528,204 143,538,713 RGD:1600115
G Krt8 keratin 8 JBrowse link 7 143,596,511 143,603,745 RGD:633141
RGD:1624319
G Krt80 keratin 80 JBrowse link 7 142,995,715 143,015,932 RGD:1600115
G Krt81 keratin 81 JBrowse link 7 143,107,901 143,113,006 RGD:1600115
G Krt82 keratin 82 JBrowse link 7 143,196,282 143,206,138 RGD:1624291
G Krt83 keratin 83 JBrowse link 7 143,078,996 143,085,833 RGD:1600115
G Krt84 keratin 84 JBrowse link 7 143,180,212 143,187,684 RGD:1624291
G Krt85 keratin 85 JBrowse link 7 143,160,480 143,167,828 RGD:1600115
G Krt86 keratin 86 JBrowse link 7 143,122,285 143,128,932 RGD:1600115
G Krt9 keratin 9 JBrowse link 10 88,102,519 88,107,232 RGD:633128
G Krtap1-1 keratin associated protein 1-1 JBrowse link 10 87,502,950 87,503,578 RGD:1600115
G Krtap1-3 keratin associated protein 1-3 JBrowse link 10 87,509,822 87,510,645 RGD:1600115
G Krtap1-5 keratin associated protein 1-5 JBrowse link 10 87,500,525 87,500,893 RGD:1600115
G Krtap12-2 keratin associated protein 12-2 JBrowse link 20 11,620,616 11,620,945 RGD:1600115
G Krtap16-1 keratin associated protein 16-1 JBrowse link 10 87,919,100 87,920,581 RGD:1600115
G Krtap2-1 keratin associated protein 2-1 JBrowse link 10 87,529,181 87,529,727 RGD:1600115
G Krtap2-4 keratin associated protein 2-4 JBrowse link 10 87,534,736 87,535,481 RGD:1600115
G Krtap2-4l keratin associated protein 2-4-like JBrowse link 10 87,521,165 87,521,615 RGD:1600115
G Krtap24-1 keratin associated protein 24-1 JBrowse link 11 28,582,189 28,584,930 RGD:1600115
G Krtap3-1 keratin associated protein 3-1 JBrowse link 10 87,484,354 87,484,983 RGD:1600115
G Krtap3-2 keratin associated protein 3-2 JBrowse link 10 87,475,178 87,475,869 RGD:1600115
G Krtap3-3 keratin associated protein 3-3 JBrowse link 10 87,468,002 87,468,697 RGD:1600115
G Krtap31-1 keratin associated protein 31-1 JBrowse link 10 87,832,766 87,833,698 RGD:1600115
G Krtap4-3 keratin associated protein 4-3 JBrowse link 10 87,752,848 87,753,685 RGD:1600115
G LOC100361664 keratin associated protein 12-1-like JBrowse link 20 11,626,503 11,627,475 RGD:1600115
G LOC100361702 keratin associated protein 12-1-like JBrowse link 20 11,638,092 11,638,689 RGD:1600115
G LOC100361739 keratin associated protein 12-1-like JBrowse link 20 11,643,794 11,644,167 RGD:1600115
G LOC100361793 keratin associated protein 12-1-like JBrowse link 20 11,633,805 11,634,137 RGD:1600115
G LOC100365588 keratin associated protein 1-3-like JBrowse link 10 87,516,465 87,517,177 RGD:1600115
G LOC100909661 putative keratin-associated protein 10-like ENSP00000375147 homolog JBrowse link 10 87,896,771 87,898,252 RGD:1600115
G LOC100910814 keratin-associated protein 9-1-like JBrowse link 10 87,788,505 87,789,067 RGD:1600115
G LOC102551453 keratin, type II cytoskeletal 5-like JBrowse link 7 143,290,296 143,317,563 RGD:1624291
G LOC102553069 keratin-associated protein 4-6-like JBrowse link 10 87,563,762 87,564,327 RGD:1600115
G LOC102554192 keratin-associated protein 29-1-like JBrowse link 10 87,912,595 87,913,614 RGD:1600115
G LOC103694397 keratin-associated protein 12-1-like JBrowse link 20 11,612,348 11,613,038 RGD:1600115
G LOC103694398 keratin-associated protein 10-1-like JBrowse link 20 11,649,784 11,650,675 RGD:1600115
G LOC108348235 keratin-associated protein 9-1-like JBrowse link 10 87,774,527 87,775,395 RGD:1600115
G LOC680396 hypothetical protein LOC680396 JBrowse link 10 87,782,351 87,783,094 RGD:1600115
G LOC680428 hypothetical protein LOC680428 JBrowse link 10 87,808,460 87,809,411 RGD:1600115
G LOC680442 hypothetical protein LOC680442 JBrowse link 10 87,819,132 87,819,714 RGD:1600115
G LOC683313 similar to keratin complex 2, basic, gene 6a RGD:1600115
G LOC685544 hypothetical protein LOC685544 JBrowse link 1 215,460,226 215,460,918 RGD:1600115
G LOC686720 similar to keratin associated protein 10-10 JBrowse link 20 11,588,200 11,589,033 RGD:1600115
G LOC687631 similar to keratin associated protein 10-10 JBrowse link 20 11,596,720 11,597,693 RGD:1600115
G LOC690386 hypothetical protein LOC690386 JBrowse link 20 11,545,513 11,546,046 RGD:1600115
G LOC690460 similar to keratin associated protein 10-7 JBrowse link 20 11,604,790 11,605,588 RGD:1600115
G LOC690478 similar to keratin associated protein 10-7 JBrowse link 20 11,655,967 11,656,884 RGD:1600115
G RGD1561557 similar to chromosome 21 open reading frame 29 JBrowse link 20 11,554,899 11,556,312 RGD:1600115
G RGD1561684 similar to keratin associated protein 2-4 JBrowse link 10 87,541,060 87,541,842 RGD:1600115
G Tchp trichoplein, keratin filament binding JBrowse link 12 47,638,278 47,653,602 RGD:1624291
RGD:13792537
lamin filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1624291
RGD:1600115
G Lmna lamin A/C JBrowse link 2 187,842,884 187,863,552 RGD:1624291
RGD:1600115
G Lmnb1 lamin B1 JBrowse link 18 51,785,111 51,822,264 RGD:1624291
RGD:1600115
G Lmnb2 lamin B2 JBrowse link 7 11,657,870 11,676,936 RGD:1624291
G Narf nuclear prelamin A recognition factor JBrowse link 10 110,445,765 110,463,735 RGD:1624291
RGD:13792537
neurofilament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cldn11 claudin 11 JBrowse link 2 115,823,541 115,836,846 RGD:1624291
RGD:1600115
G Dlgap2 DLG associated protein 2 JBrowse link 16 79,872,238 80,596,977 RGD:8554678
G Dmd dystrophin JBrowse link X 51,149,358 53,519,271 RGD:12880030
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 11 34,858,339 34,958,733 RGD:1624291
G Ina internexin neuronal intermediate filament protein, alpha JBrowse link 1 266,782,835 266,794,389 RGD:1624291
RGD:1600115
G Ldlrap1 low density lipoprotein receptor adaptor protein 1 JBrowse link 5 152,964,294 152,987,286 RGD:1624291
G Nefh neurofilament heavy JBrowse link 14 85,181,572 85,191,557 RGD:1624291
RGD:1600115
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:9743935
RGD:1624291
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:9743935
RGD:1600115
RGD:1624291
G Nrp1 neuropilin 1 JBrowse link 19 61,332,351 61,486,166 RGD:1624291
G Pcp4 Purkinje cell protein 4 JBrowse link 11 36,851,035 36,912,272 RGD:9850249
G Prph peripherin JBrowse link 7 140,742,406 140,746,197 RGD:1624291
G Shank2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 1 217,149,156 217,593,950 RGD:1624291
RGD:1600115
type III intermediate filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Des desmin JBrowse link 9 82,556,574 82,564,288 RGD:1580288
G Prph peripherin JBrowse link 7 140,742,406 140,746,197 RGD:633741
RGD:1624291
RGD:1600115
G Upp2 uridine phosphorylase 2 JBrowse link 3 44,806,106 44,846,464 RGD:1624291
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:730086
G Vmac vimentin-type intermediate filament associated coiled-coil protein JBrowse link 9 10,338,260 10,341,903 RGD:1303975
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20118
    intracellular 14086
      intracellular organelle 12291
        intracellular non-membrane-bounded organelle 4719
          cytoskeleton 2113
            intermediate filament cytoskeleton 193
              intermediate filament 156
                glial filament 0
                keratin filament 87
                lamin filament 5
                neurofilament 13
                type III intermediate filament 5
Path 2
Term Annotations click to browse term
  cellular_component 20118
    cellular anatomical entity 19774
      organelle 12827
        non-membrane-bounded organelle 4738
          intracellular non-membrane-bounded organelle 4719
            cytoskeleton 2113
              intermediate filament cytoskeleton 193
                intermediate filament 156
                  glial filament 0
                  keratin filament 87
                  lamin filament 5
                  neurofilament 13
                  type III intermediate filament 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.