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ONTOLOGY REPORT - ANNOTATIONS


Term:glycogen metabolic process
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Accession:GO:0005977 term browser browse the term
Definition:The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages.
Synonyms:exact_synonym: glycogen metabolism


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glycogen metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07037995.1 RGD:1600115
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase JBrowse link 2 219,788,234 219,843,189 RGD:1624291
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:1624291
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link 1 5,448,958 5,571,512 RGD:1624291
RGD:1600115
G G6pc glucose-6-phosphatase, catalytic subunit JBrowse link 10 89,286,009 89,296,213 RGD:1624291
G Gaa glucosidase, alpha, acid JBrowse link 10 108,395,873 108,412,999 RGD:1624291
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:1624291
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link 1 82,097,244 82,108,238 RGD:1600115
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:1624291
RGD:1600115
G Gys1 glycogen synthase 1 JBrowse link 1 101,427,195 101,447,092 RGD:1642811
RGD:2304186
G Gys2 glycogen synthase 2 JBrowse link 4 176,638,632 176,679,805 RGD:2304113
RGD:2304117
G Il6st interleukin 6 signal transducer JBrowse link 2 44,279,199 44,319,427 RGD:1624291
RGD:1600115
G Lepr leptin receptor JBrowse link 5 120,503,475 120,682,281 RGD:1624291
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 JBrowse link 17 18,059,382 18,060,572 RGD:1624291
G Pcdh12 protocadherin 12 JBrowse link 18 31,415,533 31,431,108 RGD:1624291
G Phka1 phosphorylase kinase regulatory subunit alpha 1 JBrowse link X 72,377,020 72,515,385 RGD:1600115
G Phkb phosphorylase kinase regulatory subunit beta JBrowse link 19 22,031,684 22,281,788 RGD:1600115
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 JBrowse link 12 30,450,431 30,464,314 RGD:729579
RGD:2305955
RGD:2304176
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 JBrowse link 1 199,019,298 199,032,053 RGD:727546
RGD:2304176
G Ppp1ca protein phosphatase 1 catalytic subunit alpha JBrowse link 1 219,439,953 219,443,570 RGD:1600115
G Ppp1cb protein phosphatase 1 catalytic subunit beta JBrowse link 6 23,548,507 23,581,136 RGD:1600115
G Ppp1cc protein phosphatase 1 catalytic subunit gamma JBrowse link 12 39,864,302 39,882,030 RGD:1600115
G Ppp1r1a protein phosphatase 1, regulatory (inhibitor) subunit 1A JBrowse link 7 145,146,480 145,154,131 RGD:1600115
G Ppp1r2 protein phosphatase 1, regulatory (inhibitor) subunit 2 JBrowse link 11 72,748,789 73,034,683 RGD:1600115
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B JBrowse link 16 60,415,192 60,427,498 RGD:1600115
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C JBrowse link 1 255,371,830 255,376,833 RGD:1600115
RGD:1624291
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D JBrowse link 3 173,950,613 173,953,684 RGD:1600115
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E JBrowse link 15 33,535,986 33,537,146 RGD:1600115
G Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 JBrowse link 4 6,559,153 6,799,888 RGD:1624291
G Pygb glycogen phosphorylase B JBrowse link 3 146,581,063 146,629,504 RGD:2304136
G Pygl glycogen phosphorylase L JBrowse link 6 92,597,759 92,643,734 RGD:1601233
RGD:1624291
RGD:2304136
RGD:2304119
RGD:2304117
RGD:2304115
RGD:2304113
G Pygm glycogen phosphorylase, muscle associated JBrowse link 1 221,756,325 221,771,142 RGD:2304119
RGD:2304186
RGD:1642811
G Slc37a4 solute carrier family 37 member 4 JBrowse link 8 48,716,914 48,723,024 RGD:61591
RGD:1624291
G Stk40 serine/threonine kinase 40 JBrowse link 5 144,112,612 144,150,653 RGD:1624291
RGD:1600115
G Tcf7l2 transcription factor 7 like 2 JBrowse link 1 276,686,911 276,730,517 RGD:1624291
G Ugp2 UDP-glucose pyrophosphorylase 2 JBrowse link 14 106,208,174 106,249,322 RGD:13792537
glycogen biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acadm acyl-CoA dehydrogenase medium chain JBrowse link 2 260,124,418 260,148,589 RGD:1624291
RGD:1600115
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase JBrowse link 2 219,788,234 219,843,189 RGD:1600115
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8553850
G Akt2 AKT serine/threonine kinase 2 JBrowse link 1 84,400,939 84,451,223 RGD:1600115
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link 1 5,448,958 5,571,512 RGD:1624291
G Gbe1 1,4-alpha-glucan branching enzyme 1 JBrowse link 11 7,210,169 7,485,895 RGD:1642743
RGD:1600115
RGD:1624291
G Gck glucokinase JBrowse link 14 86,149,146 86,191,589 RGD:1581879
G Gyg1 glycogenin 1 JBrowse link 2 104,916,734 104,958,219 RGD:2303736
RGD:13792537
RGD:1624291
RGD:1600115
RGD:2304070
G Gys1 glycogen synthase 1 JBrowse link 1 101,427,195 101,447,092 RGD:2303748
RGD:13792537
RGD:1624291
RGD:1600115
RGD:1642743
G Gys2 glycogen synthase 2 JBrowse link 4 176,638,632 176,679,805 RGD:1582633
RGD:13792537
RGD:1624291
RGD:8554840
RGD:8554625
RGD:1600115
RGD:1642743
RGD:2304128
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 JBrowse link 17 18,059,382 18,060,572 RGD:1624291
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 10 86,683,875 86,690,815 RGD:1600115
RGD:1624291
G Per2 period circadian regulator 2 JBrowse link 9 98,555,154 98,597,362 RGD:1624291
RGD:1600115
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 JBrowse link 12 30,450,431 30,464,314 RGD:1600115
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 JBrowse link 1 199,019,298 199,032,053 RGD:1600115
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C JBrowse link 1 255,371,830 255,376,833 RGD:1624291
RGD:1600115
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 JBrowse link 9 81,999,368 82,008,620 RGD:1624291
G Ptges3 prostaglandin E synthase 3 JBrowse link 7 2,479,267 2,497,024 RGD:1624291
glycogen catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb1 adrenoceptor beta 1 JBrowse link 1 277,537,585 277,538,985 RGD:5129142
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase JBrowse link 2 219,788,234 219,843,189 RGD:1598779
RGD:13792537
RGD:1642743
RGD:2304191
RGD:1642741
G G6pc glucose-6-phosphatase, catalytic subunit JBrowse link 10 89,286,009 89,296,213 RGD:1624291
G Gaa glucosidase, alpha, acid JBrowse link 10 108,395,873 108,412,999 RGD:1599504
RGD:1624291
RGD:1600115
RGD:1599506
G Pfkm phosphofructokinase, muscle JBrowse link 7 139,702,066 139,722,132 RGD:1624291
RGD:1600115
G Pygb glycogen phosphorylase B JBrowse link 3 146,581,063 146,629,504 RGD:1642804
RGD:13792537
RGD:2304126
RGD:1642809
G Pygl glycogen phosphorylase L JBrowse link 6 92,597,759 92,643,734 RGD:1642805
RGD:13792537
RGD:1642743
RGD:2304128
G Pygm glycogen phosphorylase, muscle associated JBrowse link 1 221,756,325 221,771,142 RGD:1599986
RGD:13792537
RGD:1624291
RGD:1600115
RGD:1642743
RGD:1599897
RGD:2304126
RGD:1642811
G Stbd1 starch binding domain 1 JBrowse link 14 16,976,355 16,979,760 RGD:1624291
RGD:1600115
glycophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:13792537
G Stbd1 starch binding domain 1 JBrowse link 14 16,976,355 16,979,760 RGD:1624291
RGD:1600115
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 JBrowse link 1 21,748,201 21,813,205 RGD:1624291
RGD:1600115
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 JBrowse link 4 118,852,046 118,901,583 RGD:1625425
G Grb10 growth factor receptor bound protein 10 JBrowse link 14 92,021,851 92,122,249 RGD:8553640
G Inpp5k inositol polyphosphate-5-phosphatase K JBrowse link 10 63,775,639 63,796,879 RGD:1624291
RGD:13792537
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:11529553
G Pask PAS domain containing serine/threonine kinase JBrowse link 9 100,450,595 100,479,719 RGD:1624291
RGD:13792537
negative regulation of glycogen catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adra1b adrenoceptor alpha 1B JBrowse link 10 29,392,762 29,450,644 RGD:1624291
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:1624291
G Akt2 AKT serine/threonine kinase 2 JBrowse link 1 84,400,939 84,451,223 RGD:1624291
RGD:1600115
G C1qtnf2 C1q and TNF related 2 JBrowse link 10 29,067,102 29,084,035 RGD:1624291
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 JBrowse link 7 61,785,423 61,816,775 RGD:1624291
G Epm2aip1 EPM2A interacting protein 1 JBrowse link 8 119,524,039 119,531,387 RGD:1624291
RGD:13792537
G Esrrb estrogen-related receptor beta JBrowse link 6 110,360,940 110,458,406 RGD:12910990
RGD:1624291
G Gck glucokinase JBrowse link 14 86,149,146 86,191,589 RGD:1600115
RGD:1624291
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:1624291
RGD:1600115
G Igf2 insulin-like growth factor 2 JBrowse link 1 215,828,102 215,839,081 RGD:1624291
RGD:1600115
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:1624291
RGD:1600115
G Irs1 insulin receptor substrate 1 JBrowse link 9 88,033,668 88,086,488 RGD:1624291
RGD:1600115
G Irs2 insulin receptor substrate 2 JBrowse link 16 83,824,515 83,848,569 RGD:1624291
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E JBrowse link 15 33,535,986 33,537,146 RGD:2306166
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G JBrowse link 17 29,566,032 29,570,294 RGD:1624291
G Pth parathyroid hormone JBrowse link 1 178,215,829 178,218,761 RGD:1624291
RGD:1600115
G Sorbs1 sorbin and SH3 domain containing 1 JBrowse link 1 259,373,921 259,502,108 RGD:1624291
positive regulation of glycogen catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adra1b adrenoceptor alpha 1B JBrowse link 10 29,392,762 29,450,644 RGD:1624291
G Avpr1a arginine vasopressin receptor 1A JBrowse link 7 67,341,366 67,345,290 RGD:1298691
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1624291
regulation of glycogen biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:1624291
G Inpp5k inositol polyphosphate-5-phosphatase K JBrowse link 10 63,775,639 63,796,879 RGD:1624291
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1625611
G Ppp1ca protein phosphatase 1 catalytic subunit alpha JBrowse link 1 219,439,953 219,443,570 RGD:2304267
G Ppp1cb protein phosphatase 1 catalytic subunit beta JBrowse link 6 23,548,507 23,581,136 RGD:2304267
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A JBrowse link 4 41,171,486 41,212,116 RGD:13792537
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B JBrowse link 16 60,415,192 60,427,498 RGD:2304267
RGD:13792537
RGD:2306167
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C JBrowse link 1 255,371,830 255,376,833 RGD:2306167
RGD:13792537
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D JBrowse link 3 173,950,613 173,953,684 RGD:2306167
RGD:13792537
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E JBrowse link 15 33,535,986 33,537,146 RGD:2306166
RGD:13792537
G Ppp1r3f protein phosphatase 1, regulatory subunit 3F JBrowse link X 15,774,091 15,784,711 RGD:1624291
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G JBrowse link 17 29,566,032 29,570,294 RGD:13792537
regulation of glycogen catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ppp1ca protein phosphatase 1 catalytic subunit alpha JBrowse link 1 219,439,953 219,443,570 RGD:2304267
G Ppp1cb protein phosphatase 1 catalytic subunit beta JBrowse link 6 23,548,507 23,581,136 RGD:2304267
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B JBrowse link 16 60,415,192 60,427,498 RGD:2304267
RGD:1624291
RGD:2306167
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C JBrowse link 1 255,371,830 255,376,833 RGD:2306167
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D JBrowse link 3 173,950,613 173,953,684 RGD:2306167
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E JBrowse link 15 33,535,986 33,537,146 RGD:2306166
regulation of glycogen metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcgr glucagon receptor JBrowse link 10 109,707,863 109,716,253 RGD:1624291
RGD:1600115
G Khk ketohexokinase JBrowse link 6 26,810,577 26,821,013 RGD:1624291
RGD:13792537
G Phlda2 pleckstrin homology-like domain, family A, member 2 JBrowse link 1 216,701,345 216,704,479 RGD:1624291
G Pomc proopiomelanocortin JBrowse link 6 28,382,937 28,388,771 RGD:1624291
RGD:1600115
G Rubcnl rubicon like autophagy enhancer JBrowse link 15 57,065,512 57,109,197 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      oxidation-reduction process 1098
        energy derivation by oxidation of organic compounds 262
          energy reserve metabolic process 87
            glycogen metabolic process 78
              glycogen biosynthetic process + 44
              glycogen catabolic process + 20
              negative regulation of glycogen metabolic process + 8
              positive regulation of glycogen metabolic process + 20
              regulation of glycogen metabolic process + 38
Path 2
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      primary metabolic process 10563
        carbohydrate metabolic process 623
          cellular carbohydrate metabolic process 310
            cellular polysaccharide metabolic process 103
              cellular glucan metabolic process 78
                glycogen metabolic process 78
                  glycogen biosynthetic process + 44
                  glycogen catabolic process + 20
                  negative regulation of glycogen metabolic process + 8
                  positive regulation of glycogen metabolic process + 20
                  regulation of glycogen metabolic process + 38
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.