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ONTOLOGY REPORT - ANNOTATIONS


Term:aminoglycan catabolic process
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Accession:GO:0006026 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages.
Synonyms:exact_synonym: aminoglycan breakdown;   aminoglycan catabolism;   aminoglycan degradation


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catabolism by host of symbiont cell wall chitin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chia chitinase, acidic IEA
ISO
GO_REF:0000107
(MGI:MGI:1931335|PMID:11085997)
Ensembl
RGD
PMID:11085997 GO_REF:0000107, MGI:MGI:1931335 NCBI chr 2:208,750,348...208,797,388
Ensembl chr 2:208,749,996...208,797,402
JBrowse link
chitin catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chi3l1 chitinase 3 like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:51,022,844...51,030,797
Ensembl chr13:51,022,681...51,030,802
JBrowse link
G Chi3l3 chitinase 3-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:208,899,871...208,936,858
Ensembl chr 2:208,900,103...208,936,860
JBrowse link
G Chia chitinase, acidic IDA
IBA
ISO
ISS
PMID:21873635
(MGI:MGI:1931335|PMID:11085997)
GO_REF:0000024
(PMID:19435888)
RGD
UniProt
PMID:11085997, PMID:19435888, PMID:11085997, PMID:21873635 GO_REF:0000024, MGI:MGI:1931335, RGD:5000759, RGD:13792537 NCBI chr 2:208,750,348...208,797,388
Ensembl chr 2:208,749,996...208,797,402
JBrowse link
G Chit1 chitinase 1 ISO
IBA
(PMID:19725875)
PMID:21873635
RGD PMID:19725875, PMID:21873635 RGD:13792537 NCBI chr13:50,947,020...50,994,644
Ensembl chr13:50,974,872...50,994,643
JBrowse link
G Ctbs chitobiase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:2751306, PMID:21873635 RGD:2301430, RGD:13792537 NCBI chr 2:252,305,874...252,320,387
Ensembl chr 2:252,305,874...252,320,387
JBrowse link
G RGD1309110 similar to Hypothetical protein MGC58999 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:208,982,251...209,004,270
Ensembl chr 2:208,983,520...209,001,895
JBrowse link
chondroitin sulfate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hyal4 hyaluronidase 4 ISO (MGI:MGI:5490850|PMID:23086929) RGD PMID:23086929 MGI:MGI:5490850 NCBI chr 4:52,147,641...52,166,276
Ensembl chr 4:52,147,641...52,167,122
JBrowse link
dermatan sulfate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase ISO (PMID:24036510)
MGI:MGI:2176236|MGI:MGI:4415188 (MGI:MGI:4397742|PMID:19834056), (MGI:MGI:4414887|PMID:19751987)
RGD PMID:19751987, PMID:19834056, PMID:24036510 MGI:MGI:4397742, MGI:MGI:4414887 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
glycosaminoglycan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030903.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:108,469,856...108,473,377 JBrowse link
G Hyal2 hyaluronidase 2 ISO
ISS
(PMID:9712871)
GO_REF:0000024
RGD
UniProt
PMID:9712871 GO_REF:0000024 NCBI chr 8:116,324,062...116,328,978
Ensembl chr 8:116,324,040...116,328,978
JBrowse link
G Hyal4 hyaluronidase 4 TAS RGD PMID:10989127 RGD:1331360 NCBI chr 4:52,147,641...52,166,276
Ensembl chr 4:52,147,641...52,167,122
JBrowse link
G Ids iduronate 2-sulfatase ISO (PMID:28593992) RGD PMID:28593992 NCBI chr 8:69,447,971...69,466,708
Ensembl chr 8:69,449,801...69,466,618
JBrowse link
G Idua alpha-L-iduronidase IDA
ISO
MGI:MGI:2176236|MGI:MGI:2651471|MGI:MGI:4415188 (MGI:MGI:3697540|PMID:16979922), (MGI:MGI:4397742|PMID:19834056), (MGI:MGI:4414887|PMID:19751987), (MGI:MGI:5295514|PMID:21873421), (MGI:MGI:5448924|PMID:22580166) RGD PMID:16979922, PMID:19751987, PMID:19834056, PMID:21873421, PMID:22580166, PMID:6138357 MGI:MGI:3697540, MGI:MGI:4397742, MGI:MGI:4414887, MGI:MGI:5295514, MGI:MGI:5448924, RGD:1599427 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
G Lyve1 lymphatic vessel endothelial hyaluronan receptor 1 ISO (MGI:MGI:2135409|PMID:11278811) RGD PMID:11278811 MGI:MGI:2135409 NCBI chr 1:175,663,266...175,676,699
Ensembl chr 1:175,663,266...175,676,699
JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase ISO (PMID:15146460), (PMID:7493035) RGD PMID:7493035, PMID:15146460 NCBI chr10:108,469,312...108,479,094 JBrowse link
heparin catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase ISO MGI:MGI:2176236|MGI:MGI:4415188 (MGI:MGI:4397742|PMID:19834056), (MGI:MGI:4414887|PMID:19751987), (MGI:MGI:5295514|PMID:21873421)
(PMID:21873421)
RGD PMID:19751987, PMID:19834056, PMID:21873421 MGI:MGI:4397742, MGI:MGI:4414887, MGI:MGI:5295514 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
hyaluronan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd44 CD44 molecule (Indian blood group) IEA
ISO
GO_REF:0000107
(PMID:17170110)
Ensembl
RGD
PMID:17170110 GO_REF:0000107 NCBI chr 3:92,695,083...92,783,820
Ensembl chr 3:92,696,313...92,783,658
JBrowse link
G Cemip cell migration inducing hyaluronidase ISO
ISS
(PMID:23509262)
GO_REF:0000024
(MGI:MGI:5545862|PMID:24251095)
RGD
UniProt
PMID:23509262, PMID:24251095 GO_REF:0000024, MGI:MGI:5545862 NCBI chr 1:146,069,774...146,226,320
Ensembl chr 1:146,069,771...146,226,462
JBrowse link
G Cemip2 cell migration inducing hyaluronidase 2 ISO (PMID:28246172) RGD PMID:28246172 NCBI chr 1:239,397,322...239,474,931
Ensembl chr 1:239,398,043...239,474,931
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (PMID:19577615) RGD PMID:19577615 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Hyal1 hyaluronidase 1 IEA
ISO
GO_REF:0000107
(PMID:11296287), (PMID:12084718), (PMID:17170110), (PMID:20473947), (PMID:21695196), (PMID:21699545), (PMID:21829529)
Ensembl
RGD
PMID:11296287, PMID:12084718, PMID:17170110, PMID:20473947, PMID:21695196, PMID:21699545, PMID:21829529 GO_REF:0000107 NCBI chr 8:116,332,834...116,337,522
Ensembl chr 8:116,332,796...116,335,435
JBrowse link
G Hyal2 hyaluronidase 2 IDA
ISO
IEA
PMID:19635555
(PMID:17170110), (PMID:19443707), (PMID:20554532), (PMID:21699545)
GO_REF:0000107
RGD
Ensembl
PMID:17170110, PMID:19443707, PMID:20554532, PMID:21699545, PMID:19635555 GO_REF:0000107, RGD:8553259 NCBI chr 8:116,324,062...116,328,978
Ensembl chr 8:116,324,040...116,328,978
JBrowse link
G Hyal3 hyaluronidase 3 IEA
ISO
ISS
GO_REF:0000107
(PMID:12084718), (PMID:21699545)
GO_REF:0000024
(MGI:MGI:4834982|PMID:20586096)
Ensembl
RGD
UniProt
PMID:12084718, PMID:20586096, PMID:21699545 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4834982 NCBI chr 8:116,336,512...116,342,147
Ensembl chr 8:116,336,512...116,342,146
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO
ISS
(PMID:17324121)
GO_REF:0000024
RGD
UniProt
PMID:17324121 GO_REF:0000024 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
keratan sulfate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gns glucosamine (N-acetyl)-6-sulfatase IDA RGD PMID:3161730 RGD:1600571 NCBI chr 7:63,467,027...63,501,054
Ensembl chr 7:63,467,216...63,499,353
JBrowse link
peptidoglycan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07067422.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 9:44,576,918...44,586,358 JBrowse link
G LOC100910070 lysozyme g-like protein 1-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,605,306...44,611,810
Ensembl chr 9:44,605,304...44,617,210
JBrowse link
G LOC103693222 lysozyme g-like protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,574,626...44,590,028
Ensembl chr 9:44,499,800...44,509,201
JBrowse link
G Lyg1 lysozyme G1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,527,596...44,539,320
Ensembl chr 9:44,527,742...44,534,041
JBrowse link
G Lyg2 lysozyme G2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,497,508...44,509,921
Ensembl chr 9:44,499,800...44,509,201
JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:79,790,879...79,796,064
Ensembl chr 1:79,790,705...79,796,111
JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:14,426,481...14,435,987
Ensembl chr 7:14,429,701...14,435,967
JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:191,903,626...192,264,872
Ensembl chr 2:192,253,629...192,264,840
JBrowse link
G Pglyrp3b peptidoglycan recognition protein 3b IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:191,900,147...191,916,863
Ensembl chr 2:191,900,317...191,915,563
JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:190,125,655...190,204,230
Ensembl chr 2:190,125,693...190,148,265
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        macromolecule metabolic process 10081
          aminoglycan metabolic process 119
            aminoglycan catabolic process 31
              chitin catabolic process + 6
              glycosaminoglycan catabolic process + 25
              poly-N-acetyllactosamine catabolic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.