Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:glycosaminoglycan catabolic process
go back to main search page
Accession:GO:0006027 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars.
Synonyms:exact_synonym: glycosaminoglycan breakdown;   glycosaminoglycan catabolism;   glycosaminoglycan degradation


show annotations for term's descendants           Sort by:
 
glycosaminoglycan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030903.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:108,469,856...108,473,377 JBrowse link
G Hyal2 hyaluronidase 2 ISO
ISS
(PMID:9712871)
GO_REF:0000024
RGD
UniProt
PMID:9712871 GO_REF:0000024 NCBI chr 8:116,324,062...116,328,978
Ensembl chr 8:116,324,040...116,328,978
JBrowse link
G Hyal4 hyaluronidase 4 TAS RGD PMID:10989127 RGD:1331360 NCBI chr 4:52,147,641...52,166,276
Ensembl chr 4:52,147,641...52,167,122
JBrowse link
G Ids iduronate 2-sulfatase ISO (PMID:28593992) RGD PMID:28593992 NCBI chr 8:69,447,971...69,466,708
Ensembl chr 8:69,449,801...69,466,618
JBrowse link
G Idua alpha-L-iduronidase IDA
ISO
MGI:MGI:2176236|MGI:MGI:2651471|MGI:MGI:4415188 (MGI:MGI:3697540|PMID:16979922), (MGI:MGI:4397742|PMID:19834056), (MGI:MGI:4414887|PMID:19751987), (MGI:MGI:5295514|PMID:21873421), (MGI:MGI:5448924|PMID:22580166) RGD PMID:16979922, PMID:19751987, PMID:19834056, PMID:21873421, PMID:22580166, PMID:6138357 MGI:MGI:3697540, MGI:MGI:4397742, MGI:MGI:4414887, MGI:MGI:5295514, MGI:MGI:5448924, RGD:1599427 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
G Lyve1 lymphatic vessel endothelial hyaluronan receptor 1 ISO (MGI:MGI:2135409|PMID:11278811) RGD PMID:11278811 MGI:MGI:2135409 NCBI chr 1:175,663,266...175,676,699
Ensembl chr 1:175,663,266...175,676,699
JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase ISO (PMID:15146460), (PMID:7493035) RGD PMID:7493035, PMID:15146460 NCBI chr10:108,469,312...108,479,094 JBrowse link
chondroitin sulfate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hyal4 hyaluronidase 4 ISO (MGI:MGI:5490850|PMID:23086929) RGD PMID:23086929 MGI:MGI:5490850 NCBI chr 4:52,147,641...52,166,276
Ensembl chr 4:52,147,641...52,167,122
JBrowse link
dermatan sulfate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase ISO (PMID:24036510)
MGI:MGI:2176236|MGI:MGI:4415188 (MGI:MGI:4397742|PMID:19834056), (MGI:MGI:4414887|PMID:19751987)
RGD PMID:19751987, PMID:19834056, PMID:24036510 MGI:MGI:4397742, MGI:MGI:4414887 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
heparin catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase ISO MGI:MGI:2176236|MGI:MGI:4415188 (MGI:MGI:4397742|PMID:19834056), (MGI:MGI:4414887|PMID:19751987), (MGI:MGI:5295514|PMID:21873421)
(PMID:21873421)
RGD PMID:19751987, PMID:19834056, PMID:21873421 MGI:MGI:4397742, MGI:MGI:4414887, MGI:MGI:5295514 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
hyaluronan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd44 CD44 molecule (Indian blood group) IEA
ISO
GO_REF:0000107
(PMID:17170110)
Ensembl
RGD
PMID:17170110 GO_REF:0000107 NCBI chr 3:92,695,083...92,783,820
Ensembl chr 3:92,696,313...92,783,658
JBrowse link
G Cemip cell migration inducing hyaluronidase ISO
ISS
(PMID:23509262)
GO_REF:0000024
(MGI:MGI:5545862|PMID:24251095)
RGD
UniProt
PMID:23509262, PMID:24251095 GO_REF:0000024, MGI:MGI:5545862 NCBI chr 1:146,069,774...146,226,320
Ensembl chr 1:146,069,771...146,226,462
JBrowse link
G Cemip2 cell migration inducing hyaluronidase 2 ISO (PMID:28246172) RGD PMID:28246172 NCBI chr 1:239,397,322...239,474,931
Ensembl chr 1:239,398,043...239,474,931
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (PMID:19577615) RGD PMID:19577615 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Hyal1 hyaluronidase 1 IEA
ISO
GO_REF:0000107
(PMID:11296287), (PMID:12084718), (PMID:17170110), (PMID:20473947), (PMID:21695196), (PMID:21699545), (PMID:21829529)
Ensembl
RGD
PMID:11296287, PMID:12084718, PMID:17170110, PMID:20473947, PMID:21695196, PMID:21699545, PMID:21829529 GO_REF:0000107 NCBI chr 8:116,332,834...116,337,522
Ensembl chr 8:116,332,796...116,335,435
JBrowse link
G Hyal2 hyaluronidase 2 IDA
ISO
IEA
PMID:19635555
(PMID:17170110), (PMID:19443707), (PMID:20554532), (PMID:21699545)
GO_REF:0000107
RGD
Ensembl
PMID:17170110, PMID:19443707, PMID:20554532, PMID:21699545, PMID:19635555 GO_REF:0000107, RGD:8553259 NCBI chr 8:116,324,062...116,328,978
Ensembl chr 8:116,324,040...116,328,978
JBrowse link
G Hyal3 hyaluronidase 3 IEA
ISO
ISS
GO_REF:0000107
(PMID:12084718), (PMID:21699545)
GO_REF:0000024
(MGI:MGI:4834982|PMID:20586096)
Ensembl
RGD
UniProt
PMID:12084718, PMID:20586096, PMID:21699545 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4834982 NCBI chr 8:116,336,512...116,342,147
Ensembl chr 8:116,336,512...116,342,146
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO
ISS
(PMID:17324121)
GO_REF:0000024
RGD
UniProt
PMID:17324121 GO_REF:0000024 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
keratan sulfate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gns glucosamine (N-acetyl)-6-sulfatase IDA RGD PMID:3161730 RGD:1600571 NCBI chr 7:63,467,027...63,501,054
Ensembl chr 7:63,467,216...63,499,353
JBrowse link
peptidoglycan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07067422.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 9:44,576,918...44,586,358 JBrowse link
G LOC100910070 lysozyme g-like protein 1-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,605,306...44,611,810
Ensembl chr 9:44,605,304...44,617,210
JBrowse link
G LOC103693222 lysozyme g-like protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,574,626...44,590,028
Ensembl chr 9:44,499,800...44,509,201
JBrowse link
G Lyg1 lysozyme G1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,527,596...44,539,320
Ensembl chr 9:44,527,742...44,534,041
JBrowse link
G Lyg2 lysozyme G2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,497,508...44,509,921
Ensembl chr 9:44,499,800...44,509,201
JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:79,790,879...79,796,064
Ensembl chr 1:79,790,705...79,796,111
JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:14,426,481...14,435,987
Ensembl chr 7:14,429,701...14,435,967
JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:191,903,626...192,264,872
Ensembl chr 2:192,253,629...192,264,840
JBrowse link
G Pglyrp3b peptidoglycan recognition protein 3b IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:191,900,147...191,916,863
Ensembl chr 2:191,900,317...191,915,563
JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:190,125,655...190,204,230
Ensembl chr 2:190,125,693...190,148,265
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      organic substance metabolic process 11651
        macromolecule metabolic process 10086
          aminoglycan metabolic process 119
            aminoglycan catabolic process 31
              glycosaminoglycan catabolic process 25
                chondroitin sulfate catabolic process 1
                dermatan sulfate catabolic process 1
                galactosaminoglycan catabolic process 0
                heparin catabolic process 1
                hyaluronan catabolic process 8
                keratan sulfate catabolic process 1
                peptidoglycan catabolic process + 10
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.