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ONTOLOGY REPORT - ANNOTATIONS


Term:amino sugar metabolic process
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Accession:GO:0006040 term browser browse the term
Definition:The chemical reactions and pathways involving any amino sugar, sugars containing an amino group in place of a hydroxyl group.
Synonyms:exact_synonym: amino sugar metabolism;   aminosaccharide metabolic process;   aminosaccharide metabolism


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catabolism by host of symbiont cell wall chitin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chia chitinase, acidic IEA
ISO
GO_REF:0000107
(MGI:1931335|PMID:11085997)
Ensembl
RGD
PMID:11085997 GO_REF:0000107, MGI:1931335 NCBI chr 2:208,750,348...208,797,388
Ensembl chr 2:208,749,996...208,797,402
JBrowse link
chitin catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chi3l1 chitinase 3 like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:51,022,844...51,030,797
Ensembl chr13:51,022,681...51,030,802
JBrowse link
G Chi3l3 chitinase 3-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:208,899,871...208,936,858
Ensembl chr 2:208,900,103...208,936,860
JBrowse link
G Chia chitinase, acidic IDA
ISO
IBA
ISS
(MGI:1931335|PMID:11085997)
PMID:21873635
GO_REF:0000024
(PMID:19435888)
RGD
UniProt
PMID:11085997, PMID:19435888, PMID:11085997, PMID:21873635 GO_REF:0000024, MGI:1931335, RGD:5000759, RGD:13792537 NCBI chr 2:208,750,348...208,797,388
Ensembl chr 2:208,749,996...208,797,402
JBrowse link
G Chit1 chitinase 1 ISO
IBA
(PMID:19725875)
PMID:21873635
RGD PMID:19725875, PMID:21873635 RGD:13792537 NCBI chr13:50,947,020...50,994,644
Ensembl chr13:50,974,872...50,994,643
JBrowse link
G Ctbs chitobiase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:2751306, PMID:21873635 RGD:2301430, RGD:13792537 NCBI chr 2:252,305,874...252,320,387
Ensembl chr 2:252,305,874...252,320,387
JBrowse link
G RGD1309110 similar to Hypothetical protein MGC58999 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:208,982,251...209,004,270
Ensembl chr 2:208,983,520...209,001,895
JBrowse link
fructosamine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fn3k fructosamine 3 kinase IBA
ISO
PMID:21873635
(MGI:1889989|PMID:11016445)
RGD PMID:11016445, PMID:21873635 MGI:1889989, RGD:13792537 NCBI chr10:110,626,462...110,642,262
Ensembl chr10:110,631,494...110,642,260
JBrowse link
G Mdp1 magnesium-dependent phosphatase 1 IDA RGD PMID:16670083 RGD:2326017 NCBI chr15:34,336,058...34,340,078
Ensembl chr15:34,336,058...34,338,956
JBrowse link
glucosamine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IDA RGD PMID:10898949 RGD:1625426 NCBI chr 4:118,852,046...118,901,583
Ensembl chr 4:118,852,062...118,901,591
JBrowse link
glucosamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnpda1 glucosamine-6-phosphate deaminase 1 ISO
IBA
(PMID:9438414)
PMID:21873635
RGD PMID:9438414, PMID:21873635 RGD:13792537 NCBI chr18:31,479,117...31,489,154
Ensembl chr18:31,479,117...31,487,671
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:62,628,102...62,646,158
Ensembl chr14:62,628,111...62,646,110
JBrowse link
glucosamine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 IDA RGD PMID:3792612 RGD:2311686 NCBI chr15:19,721,292...19,734,032
Ensembl chr15:19,721,293...19,733,967
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase IDA
IMP
RGD PMID:12054585, PMID:18539296 RGD:9590171, RGD:9590185 NCBI chr  X:71,540,870...71,585,906
Ensembl chr  X:71,528,988...71,585,908
JBrowse link
N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:59,511,738...59,553,421
Ensembl chr 5:59,512,872...59,553,416
JBrowse link
G Nanp N-acetylneuraminic acid phosphatase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:146,800,018...146,812,988
Ensembl chr 3:146,800,019...146,812,989
JBrowse link
N-acetylglucosamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd2 amidohydrolase domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,528,400...13,536,949
Ensembl chr10:13,528,413...13,536,899
JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:31,479,117...31,489,154
Ensembl chr18:31,479,117...31,487,671
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:62,628,102...62,646,158
Ensembl chr14:62,628,111...62,646,110
JBrowse link
N-acetylglucosamine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst1 carbohydrate sulfotransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:81,441,785...81,512,829
Ensembl chr 3:81,498,022...81,512,807
JBrowse link
G Chst2 carbohydrate sulfotransferase 2 ISO
IBA
(PMID:9722682)
PMID:21873635
RGD PMID:9722682, PMID:21873635 RGD:13792537 NCBI chr 8:103,186,759...103,190,612
Ensembl chr 8:103,188,651...103,190,243
JBrowse link
G Chst3 carbohydrate sulfotransferase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:29,731,828...29,768,656
Ensembl chr20:29,731,816...29,738,506
JBrowse link
G Chst4 carbohydrate sulfotransferase 4 ISO
IBA
(PMID:10330415)
PMID:21873635
RGD PMID:10330415, PMID:21873635 RGD:13792537 NCBI chr19:41,630,060...41,642,373
Ensembl chr19:41,631,715...41,640,367
JBrowse link
G Chst5 carbohydrate sulfotransferase 5 ISO
IBA
(PMID:11352640)
(MGI:1934540|PMID:11278593), (MGI:3687902|PMID:12218059)
PMID:21873635
RGD PMID:11278593, PMID:11352640, PMID:12218059, PMID:21873635 MGI:1934540, MGI:3687902, RGD:13792537 NCBI chr19:44,115,065...44,136,092
Ensembl chr19:44,115,120...44,135,387
JBrowse link
G Chst7 carbohydrate sulfotransferase 7 ISO
IBA
(PMID:10913333)
PMID:21873635
RGD PMID:10913333, PMID:21873635 RGD:13792537 NCBI chr  X:2,623,018...2,657,155
Ensembl chr  X:2,623,024...2,657,155
JBrowse link
G Extl2 exostosin-like glycosyltransferase 2 ISO (PMID:10318803)
(MGI:5882911|PMID:12562774)
RGD PMID:10318803, PMID:12562774 MGI:5882911 NCBI chr 2:218,951,112...218,972,576
Ensembl chr 2:218,951,141...218,971,886
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 IDA RGD PMID:3792612 RGD:2311686 NCBI chr15:19,721,292...19,734,032
Ensembl chr15:19,721,293...19,733,967
JBrowse link
G Hexb hexosaminidase subunit beta IDA RGD PMID:1397486 RGD:1599434 NCBI chr 2:27,983,925...28,003,260
Ensembl chr 2:27,984,117...28,003,186
JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase IBA
ISO
PMID:21873635
(MGI:5613435|PMID:24619415)
RGD PMID:24619415, PMID:21873635 MGI:5613435, RGD:13792537 NCBI chr 7:121,394,541...121,436,935
Ensembl chr 7:121,408,829...121,435,022
JBrowse link
G Nagk N-acetylglucosamine kinase ISO (MGI:1859071|PMID:10824116) RGD PMID:10824116 MGI:1859071 NCBI chr 4:115,473,848...115,485,027
Ensembl chr 4:115,473,811...115,481,438
JBrowse link
G Oga O-GlcNAcase IMP
ISO
IEA
(PMID:11148210)
GO_REF:0000107
RGD
Ensembl
PMID:11148210, PMID:19139380 GO_REF:0000107, RGD:2305938 NCBI chr 1:265,506,752...265,542,452
Ensembl chr 1:265,507,451...265,542,276
JBrowse link
G Renbp renin binding protein IDA
ISO
IBA
MGI:2386397 (MGI:1858659|PMID:10809771)
PMID:21873635
RGD PMID:10809771, PMID:11726282, PMID:21873635 MGI:1858659, RGD:5132613, RGD:13792537 NCBI chr  X:156,854,490...156,863,548
Ensembl chr  X:156,854,594...156,863,528
JBrowse link
N-acetylmannosamine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Renbp renin binding protein IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11726282, PMID:21873635 RGD:5132613, RGD:13792537 NCBI chr  X:156,854,490...156,863,548
Ensembl chr  X:156,854,594...156,863,528
JBrowse link
N-acetylneuraminate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase TAS RGD PMID:15330759 RGD:1358725 NCBI chr 5:59,511,738...59,553,421
Ensembl chr 5:59,512,872...59,553,416
JBrowse link
G Nanp N-acetylneuraminic acid phosphatase IDA
ISO
PMID:16237198
(PMID:16237198)
RGD PMID:16237198, PMID:16237198 RGD:8554804 NCBI chr 3:146,800,018...146,812,988
Ensembl chr 3:146,800,019...146,812,989
JBrowse link
N-acetylneuraminate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd2 amidohydrolase domain containing 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:13,528,400...13,536,949
Ensembl chr10:13,528,413...13,536,899
JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:31,479,117...31,489,154
Ensembl chr18:31,479,117...31,487,671
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:62,628,102...62,646,158
Ensembl chr14:62,628,111...62,646,110
JBrowse link
G Nagk N-acetylglucosamine kinase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:115,473,848...115,485,027
Ensembl chr 4:115,473,811...115,481,438
JBrowse link
G Npl N-acetylneuraminate pyruvate lyase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:70,938,073...70,981,179
Ensembl chr13:70,938,082...70,980,913
JBrowse link
G Renbp renin binding protein IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:156,854,490...156,863,548
Ensembl chr  X:156,854,594...156,863,528
JBrowse link
N-acetylneuraminate metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmas cytidine monophosphate N-acetylneuraminic acid synthetase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:176,994,129...177,012,445
Ensembl chr 4:176,994,129...177,012,444
JBrowse link
G St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 ISO (PMID:19820709) RGD PMID:19820709 NCBI chr 7:107,895,045...107,963,158
Ensembl chr 7:107,895,045...107,963,142
JBrowse link
G St6gal1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23999306)
Ensembl
UniProt
RGD
PMID:23999306 GO_REF:0000024, GO_REF:0000107 NCBI chr11:80,927,601...80,981,424
Ensembl chr11:80,927,601...80,981,422
JBrowse link
UDP-N-acetylgalactosamine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 ISO (PMID:12678917), (PMID:14688233) RGD PMID:12678917, PMID:14688233 NCBI chr10:83,677,768...83,701,487 JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 ISO (PMID:11514575) RGD PMID:11514575 NCBI chr16:22,704,318...23,075,071
Ensembl chr16:22,979,444...23,074,798
JBrowse link
G Extl2 exostosin-like glycosyltransferase 2 ISO (PMID:10318803)
(MGI:5882911|PMID:12562774)
RGD PMID:10318803, PMID:12562774 MGI:5882911 NCBI chr 2:218,951,112...218,972,576
Ensembl chr 2:218,951,141...218,971,886
JBrowse link
UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:118,852,046...118,901,583
Ensembl chr 4:118,852,062...118,901,591
JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:35,279,237...35,325,506
Ensembl chr10:35,279,236...35,325,508
JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:31,479,117...31,489,154
Ensembl chr18:31,479,117...31,487,671
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:62,628,102...62,646,158
Ensembl chr14:62,628,111...62,646,110
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr15:19,721,292...19,734,032
Ensembl chr15:19,721,293...19,733,967
JBrowse link
G Pgm3 phosphoglucomutase 3 IEA
ISO
IBA
GO_REF:0000041
MGI:3758645 (MGI:3723540|PMID:17548465)
PMID:21873635
(PMID:24589341)
UniProt
RGD
PMID:17548465, PMID:24589341, PMID:21873635 GO_REF:0000041, MGI:3723540, RGD:13792537 NCBI chr 8:94,225,513...94,243,230
Ensembl chr 8:94,225,515...94,243,215
JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:88,463,532...88,497,901
Ensembl chr13:88,463,532...88,497,901
JBrowse link
G Uap1l1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:2,579,250...2,584,523
Ensembl chr 3:2,579,258...2,584,523
JBrowse link
UDP-N-acetylglucosamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgat1 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase ISO (MGI:51667|PMID:1421759) RGD PMID:1421759 MGI:51667 NCBI chr10:34,518,392...34,537,214
Ensembl chr10:34,519,790...34,537,210
JBrowse link
UDP-N-acetylglucosamine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 ISO MGI:3579308 (MGI:56455|PMID:4031755), (MGI:65525|PMID:8137279) RGD PMID:4031755, PMID:8137279 MGI:56455, MGI:65525 NCBI chr10:83,677,768...83,701,487 JBrowse link
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 IDA RGD PMID:8280061 RGD:1624315 NCBI chr 8:48,657,779...48,664,531
Ensembl chr 8:48,657,795...48,664,860
JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:10898949, PMID:21873635 RGD:1625426, RGD:13792537 NCBI chr 4:118,852,046...118,901,583
Ensembl chr 4:118,852,062...118,901,591
JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,279,237...35,325,506
Ensembl chr10:35,279,236...35,325,508
JBrowse link
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:59,511,738...59,553,421
Ensembl chr 5:59,512,872...59,553,416
JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 IDA RGD PMID:6303311 RGD:1625549 NCBI chr13:88,463,532...88,497,901
Ensembl chr13:88,463,532...88,497,901
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      organic substance metabolic process 11643
        carbohydrate derivative metabolic process 1035
          amino sugar metabolic process 40
            N-acetylneuraminate metabolic process + 11
            UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process + 0
            UDP-N-acetylgalactosamine metabolic process + 3
            UDP-N-acetylglucosamine metabolic process + 12
            amino sugar biosynthetic process + 10
            amino sugar catabolic process + 13
            fructosamine metabolic process + 2
            glucosamine-containing compound metabolic process + 26
            lipid X metabolic process 0
            mannosamine metabolic process + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.