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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside diphosphate phosphorylation
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Accession:GO:0006165 term browser browse the term
Definition:The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate.


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nucleoside diphosphate phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak1 adenylate kinase 1 JBrowse link 3 11,652,143 11,659,135 RGD:1624291
RGD:1600115
G Ak4 adenylate kinase 4 JBrowse link 5 120,250,318 120,309,153 RGD:1624291
RGD:1600115
G Ak5 adenylate kinase 5 JBrowse link 2 257,671,772 257,864,385 RGD:1624291
G Ak7 adenylate kinase 7 JBrowse link 6 129,538,648 129,606,960 RGD:1624291
G Ak8 adenylate kinase 8 JBrowse link 3 7,279,429 7,394,509 RGD:1624291
RGD:1600115
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:1600115
RGD:1624291
G Cmpk2 cytidine/uridine monophosphate kinase 2 JBrowse link 6 45,683,242 45,694,824 RGD:1624291
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:1600115
G Dtymk deoxythymidylate kinase JBrowse link 9 100,921,565 100,930,399 RGD:1600115
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:70281
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:2299082
RGD:1624291
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 JBrowse link 10 14,258,232 14,259,365 RGD:1600115
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 JBrowse link 10 15,461,567 15,465,422 RGD:1600115
G Nme5 NME/NM23 family member 5 JBrowse link 18 27,357,460 27,374,641 RGD:1600115
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 JBrowse link 8 117,920,912 117,928,148 RGD:1600115
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1600115
G Pck1 phosphoenolpyruvate carboxykinase 1 JBrowse link 3 171,213,936 171,219,885 RGD:1600115
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha JBrowse link 4 101,181,315 101,210,692 RGD:1600115
ATP generation from ADP term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
canonical glycolysis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eno1 enolase 1 JBrowse link 5 167,288,223 167,299,610 RGD:2302788
RGD:1624291
G Eno2 enolase 2 JBrowse link 4 157,285,192 157,294,090 RGD:2302788
G Foxk1 forkhead box K1 JBrowse link 12 14,183,436 14,244,634 RGD:1624291
G Foxk2 forkhead box K2 JBrowse link 10 110,468,905 110,518,854 RGD:1624291
G LOC100911625 gamma-enolase-like JBrowse link 9 20,251,564 20,260,465 RGD:2302788
G Pfkl phosphofructokinase, liver type JBrowse link 20 11,393,860 11,415,889 RGD:13792537
G Pfkm phosphofructokinase, muscle JBrowse link 7 139,702,066 139,722,132 RGD:1624291
RGD:13792537
RGD:1600115
G Pfkp phosphofructokinase, platelet JBrowse link 17 68,510,765 68,574,387 RGD:13792537
CDP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
dADP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
dCDP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
dGDP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
GDP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
glycolysis from storage polysaccharide through glucose-1-phosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pfkm phosphofructokinase, muscle JBrowse link 7 139,702,066 139,722,132 RGD:1624291
RGD:1600115
glycolytic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005667.1 RGD:13792537
G AABR07006451.1 RGD:13792537
G AABR07013200.1 RGD:13792537
G AABR07021086.1 RGD:13792537
G AABR07022022.1 RGD:13792537
G AABR07024795.1 RGD:13792537
G AABR07025010.1 RGD:1600115
G AABR07028748.1 RGD:13792537
G AABR07029675.1 RGD:1600115
G AABR07030729.1 RGD:1600115
RGD:13792537
G AABR07032392.1 RGD:1600115
G AABR07034445.1 RGD:1600115
RGD:13792537
G AABR07040494.1 RGD:1600115
G AABR07040565.1 RGD:13792537
G AABR07041179.1 RGD:13792537
G AABR07045032.1 RGD:1600115
RGD:13792537
G AABR07052523.1 RGD:1600115
G AABR07053879.1 RGD:1600115
RGD:13792537
G AABR07066994.1 RGD:13792537
G AABR07067976.1 RGD:1600115
G AABR07068417.1 RGD:13792537
G AABR07070043.1 RGD:1600115
RGD:13792537
G AABR07071101.1 RGD:13792537
G AC094212.1 RGD:1600115
RGD:13792537
G AC107446.2 RGD:13792537
G AC110474.1 RGD:1600115
G AC110981.1 RGD:13792537
G Aldoa aldolase, fructose-bisphosphate A JBrowse link 1 198,228,387 198,233,988 RGD:1600115
RGD:13792537
RGD:1624291
G Aldoart2 aldolase 1 A retrogene 2 JBrowse link 6 76,349,362 76,351,052 RGD:1600115
RGD:13792537
G Aldob aldolase, fructose-bisphosphate B JBrowse link 5 64,805,772 64,818,813 RGD:2302804
RGD:13792537
RGD:1600115
RGD:1624291
G Aldoc aldolase, fructose-bisphosphate C JBrowse link 10 65,586,504 65,590,093 RGD:1600115
RGD:13792537
G Bpgm bisphosphoglycerate mutase JBrowse link 4 61,912,210 61,940,697 RGD:1600115
G Dhtkd1 dehydrogenase E1 and transketolase domain containing 1 JBrowse link 17 76,306,585 76,358,058 RGD:1600115
G Eno1 enolase 1 JBrowse link 5 167,288,223 167,299,610 RGD:12792993
G Eno2 enolase 2 JBrowse link 4 157,285,192 157,294,090 RGD:2302804
G Eno3 enolase 3 JBrowse link 10 57,278,271 57,283,661 RGD:1600115
G Eno4 enolase 4 JBrowse link 1 280,097,061 280,129,750 RGD:1624291
G Gapdh glyceraldehyde-3-phosphate dehydrogenase JBrowse link 4 157,676,336 157,680,322 RGD:2302804
RGD:13792537
RGD:13792662
RGD:1600115
G Gapdhs glyceraldehyde-3-phosphate dehydrogenase, spermatogenic JBrowse link 1 89,180,063 89,195,347 RGD:1303349
RGD:13792537
RGD:1624291
RGD:1600115
G Gck glucokinase JBrowse link 14 86,149,146 86,191,589 RGD:2302790
RGD:1600115
RGD:13792537
RGD:2302851
G Gpi glucose-6-phosphate isomerase JBrowse link 1 90,063,411 90,091,287 RGD:1600115
RGD:13792537
RGD:1624291
G Hk1 hexokinase 1 JBrowse link 20 31,911,460 31,979,780 RGD:1358232
RGD:1600115
RGD:13792537
RGD:2302851
RGD:2302804
G Hk2 hexokinase 2 JBrowse link 4 113,559,396 113,609,897 RGD:13792537
RGD:1600115
G Hk3 hexokinase 3 JBrowse link 17 10,134,726 10,152,976 RGD:13792537
RGD:1600115
G LOC100362738 M2 pyruvate kinase-like JBrowse link 20 18,058,221 18,060,409 RGD:1600115
RGD:13792537
G LOC100911515 triosephosphate isomerase-like JBrowse link 9 20,213,596 20,217,279 RGD:1600115
G LOC103693780 2-oxoglutarate dehydrogenase, mitochondrial-like JBrowse link 14 86,599,906 86,614,963 RGD:1600115
G LOC108351137 glyceraldehyde-3-phosphate dehydrogenase JBrowse link 5 115,649,077 115,650,141 RGD:1600115
RGD:13792537
G LOC303448 similar to glyceraldehyde-3-phosphate dehydrogenase JBrowse link 10 78,687,653 78,696,097 RGD:13792537
G Ogdh oxoglutarate dehydrogenase JBrowse link 14 86,414,924 86,481,903 RGD:1600115
G Pfkfb2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 JBrowse link 13 47,413,453 47,440,682 RGD:1624291
RGD:1600115
G Pfkl phosphofructokinase, liver type JBrowse link 20 11,393,860 11,415,889 RGD:2301239
RGD:1624291
RGD:2302851
RGD:2302790
RGD:2302736
G Pfkm phosphofructokinase, muscle JBrowse link 7 139,702,066 139,722,132 RGD:1599363
RGD:1624291
RGD:2302736
G Pfkp phosphofructokinase, platelet JBrowse link 17 68,510,765 68,574,387 RGD:2302736
RGD:2302804
G Pgam1 phosphoglycerate mutase 1 JBrowse link 1 261,158,204 261,165,814 RGD:1624291
G Pgam2 phosphoglycerate mutase 2 JBrowse link 14 86,045,005 86,047,116 RGD:1624291
G Pgk1 phosphoglycerate kinase 1 JBrowse link X 77,263,399 77,279,373 RGD:2302859
RGD:13792537
RGD:1600115
RGD:1624291
RGD:2302860
G Pgk2 phosphoglycerate kinase 2 JBrowse link 9 24,095,774 24,097,340 RGD:1624291
RGD:13792537
RGD:1600115
G Pklr pyruvate kinase L/R JBrowse link 2 188,449,158 188,458,034 RGD:2302790
RGD:13792537
RGD:1600115
RGD:2302851
G Pkm pyruvate kinase M1/2 JBrowse link 8 64,480,963 64,502,957 RGD:2302790
RGD:13792537
RGD:1624291
RGD:12793012
RGD:1600115
RGD:2302804
G Pkm_v1 pyruvate kinase M1/2, variant 1 RGD:1600115
RGD:13792537
RGD:12793012
G Pkm_v2 pyruvate kinase M1/2, variant 2 RGD:1600115
RGD:13792537
RGD:12793012
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 JBrowse link 9 81,999,368 82,008,620 RGD:1624291
G RGD1560402 similar to Phosphoglycerate kinase 1 JBrowse link 2 42,726,747 42,728,100 RGD:1600115
RGD:13792537
G Tpi1 triosephosphate isomerase 1 JBrowse link 4 157,328,375 157,331,905 RGD:1599585
RGD:13792537
RGD:1600115
glycolytic process from galactose term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Galk1 galactokinase 1 JBrowse link 10 104,560,322 104,564,499 RGD:1624291
G Galt galactose-1-phosphate uridylyltransferase JBrowse link 5 58,144,679 58,147,946 RGD:1624291
glycolytic process through fructose-6-phosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pfkl phosphofructokinase, liver type JBrowse link 20 11,393,860 11,415,889 RGD:1624291
G Pfkm phosphofructokinase, muscle JBrowse link 7 139,702,066 139,722,132 RGD:1600115
RGD:1624291
G Pfkp phosphofructokinase, platelet JBrowse link 17 68,510,765 68,574,387 RGD:1600115
negative regulation of glycolytic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn3 actinin alpha 3 JBrowse link 1 220,120,532 220,136,460 RGD:1624291
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 JBrowse link 19 55,438,409 55,510,652 RGD:1624291
G Ddit4 DNA-damage-inducible transcript 4 JBrowse link 20 29,509,283 29,511,382 RGD:1624291
RGD:1600115
G Fbp1 fructose-bisphosphatase 1 JBrowse link 17 396,175 417,480 RGD:1600115
RGD:1624291
G Hdac4 histone deacetylase 4 JBrowse link 9 99,052,945 99,299,715 RGD:1624291
G Ier3 immediate early response 3 JBrowse link 20 3,438,798 3,440,002 RGD:1624291
G Mtch2 mitochondrial carrier 2 JBrowse link 3 79,678,141 79,695,356 RGD:1624291
G Myog myogenin JBrowse link 13 51,126,459 51,129,048 RGD:9686132
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:1624291
RGD:1600115
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link 1 194,767,484 194,769,519 RGD:1600115
RGD:1624291
G Ppara peroxisome proliferator activated receptor alpha JBrowse link 7 126,618,872 126,687,282 RGD:1624291
RGD:1600115
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:7242186
G Sirt6 sirtuin 6 JBrowse link 7 10,937,622 10,943,048 RGD:1624291
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:1624291
G Tigar TP53 induced glycolysis regulatory phosphatase JBrowse link 4 159,635,145 159,654,108 RGD:1624291
RGD:13792537
negative regulation of glycolytic process through fructose-6-phosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc4a1 solute carrier family 4 member 1 (Diego blood group) JBrowse link 10 90,296,144 90,312,401 RGD:1624291
RGD:1600115
positive regulation of glycolytic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1624291
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 JBrowse link 6 108,087,677 108,123,811 RGD:1624291
RGD:1600115
G Esrrb estrogen-related receptor beta JBrowse link 6 110,360,940 110,458,406 RGD:12910990
G Gck glucokinase JBrowse link 14 86,149,146 86,191,589 RGD:2301905
G Gpd1 glycerol-3-phosphate dehydrogenase 1 JBrowse link 7 141,368,928 141,377,931 RGD:1624291
G Htr2a 5-hydroxytryptamine receptor 2A JBrowse link 15 56,666,152 56,732,469 RGD:1624291
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:1624291
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:1624291
RGD:1600115
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:1624291
RGD:1600115
G Mif macrophage migration inhibitory factor JBrowse link 20 13,715,219 13,732,980 RGD:1642010
G Mlxipl MLX interacting protein-like JBrowse link 12 24,590,645 24,619,639 RGD:1624291
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:7207891
G P2rx7 purinergic receptor P2X 7 JBrowse link 12 39,353,613 39,396,042 RGD:1624291
RGD:1600115
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:8554193
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:8554193
G Prxl2c peroxiredoxin like 2C JBrowse link 17 1,798,224 1,830,011 RGD:1624291
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:1624291
G Slc4a4 solute carrier family 4 member 4 JBrowse link 14 20,476,258 20,817,042 RGD:1624291
RGD:1600115
G Zbtb20 zinc finger and BTB domain containing 20 JBrowse link 11 62,014,925 62,561,113 RGD:1624291
regulation of glycolytic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1600115
RGD:1624291
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:1624291
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1624291
RGD:1600115
G Il3 interleukin 3 JBrowse link 10 39,620,535 39,622,973 RGD:1624291
G Jmjd8 jumonji domain containing 8 JBrowse link 10 15,195,954 15,198,870 RGD:1600115
RGD:1624291
G Mlxipl MLX interacting protein-like JBrowse link 12 24,590,645 24,619,639 RGD:634534
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 71,540,870 71,585,906 RGD:1600115
RGD:1624291
G Pfkfb3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 JBrowse link 17 70,632,778 70,713,736 RGD:729510
G Pgam1 phosphoglycerate mutase 1 JBrowse link 1 261,158,204 261,165,814 RGD:1624291
G Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 JBrowse link 4 6,559,153 6,799,888 RGD:1624291
G Slc2a6 solute carrier family 2 member 6 JBrowse link 3 5,567,729 5,575,144 RGD:1624291
G Trex1 three prime repair exonuclease 1 JBrowse link 8 117,796,127 117,797,427 RGD:1624291
G Zbtb7a zinc finger and BTB domain containing 7a JBrowse link 7 11,429,266 11,446,119 RGD:1600115
RGD:1624291
regulation of pyruvate kinase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jmjd8 jumonji domain containing 8 JBrowse link 10 15,195,954 15,198,870 RGD:1600115
RGD:1624291
TDP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
UDP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19335
    metabolic process 11555
      small molecule metabolic process 1777
        nucleobase-containing small molecule metabolic process 575
          nucleoside phosphate metabolic process 496
            nucleotide metabolic process 489
              nucleoside diphosphate phosphorylation 135
                ATP generation from ADP + 117
                CDP phosphorylation 1
                GDP phosphorylation 1
                IDP phosphorylation 0
                TDP phosphorylation 1
                UDP phosphorylation 1
                dADP phosphorylation 1
                dCDP phosphorylation 1
                dGDP phosphorylation 1
                dIDP phosphorylation 0
Path 2
Term Annotations click to browse term
  biological_process 19335
    cellular process 17239
      cellular metabolic process 10567
        cellular nitrogen compound metabolic process 6324
          nucleobase-containing compound metabolic process 5258
            nucleobase-containing small molecule metabolic process 575
              nucleoside phosphate metabolic process 496
                nucleotide metabolic process 489
                  nucleoside diphosphate phosphorylation 135
                    ATP generation from ADP + 117
                    CDP phosphorylation 1
                    GDP phosphorylation 1
                    IDP phosphorylation 0
                    TDP phosphorylation 1
                    UDP phosphorylation 1
                    dADP phosphorylation 1
                    dCDP phosphorylation 1
                    dGDP phosphorylation 1
                    dIDP phosphorylation 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.