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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA metabolic process
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Accession:GO:0006259 term browser browse the term
Definition:Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
Synonyms:exact_synonym: DNA metabolism;   cellular DNA metabolism
 alt_id: GO:0055132


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DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase2b deoxyribonuclease 2 beta IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:252,436,363...252,475,506
Ensembl chr 2:252,436,332...252,451,999
JBrowse link
G Dntt DNA nucleotidylexotransferase ISO (MGI:MGI:53124|PMID:8464703)
(PMID:11473582)
RGD PMID:8464703, PMID:11473582 MGI:MGI:53124 NCBI chr 1:260,289,626...260,321,174
Ensembl chr 1:260,289,589...260,321,320
JBrowse link
G Eri1 exoribonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,406,009...136,533,408
Ensembl chr 5:136,406,130...136,533,389
JBrowse link
G LOC103690794 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:5,881,524...5,887,879
Ensembl chr  X:5,883,623...5,887,264
JBrowse link
G Map1s microtubule-associated protein 1S IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:20,268,663...20,278,850
Ensembl chr16:20,267,581...20,278,814
JBrowse link
G Mki67 marker of proliferation Ki-67 IEP RGD PMID:9303485 RGD:2317713 NCBI chr 1:207,993,895...208,020,454
Ensembl chr 1:207,993,895...208,020,454
JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component ISO (PMID:22678361) RGD PMID:22678361 NCBI chr 1:261,191,646...261,229,070
Ensembl chr 1:261,191,646...261,229,046
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 ISO MGI:MGI:1857862 (MGI:MGI:2157189|PMID:11756244), (MGI:MGI:2656673|PMID:12707040) RGD PMID:11756244, PMID:12707040 MGI:MGI:2157189, MGI:MGI:2656673 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Pld3 phospholipase D family, member 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:84,339,269...84,361,686
Ensembl chr 1:84,339,261...84,353,725
JBrowse link
G Pld4 phospholipase D family, member 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:137,323,713...137,331,231
Ensembl chr 6:137,323,713...137,331,231
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 ISO
ISS
(PMID:18974355)
GO_REF:0000024
RGD
UniProt
PMID:18974355 GO_REF:0000024 NCBI chr 9:79,943,775...79,990,230
Ensembl chr 9:79,944,132...79,990,229
JBrowse link
G Tatdn1 TatD DNase domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:98,782,164...98,813,001
Ensembl chr 7:98,782,178...98,804,499
JBrowse link
G Tatdn2 TatD DNase domain containing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:145,653,299...145,669,343
Ensembl chr 4:145,653,602...145,669,343
JBrowse link
G Tefm transcription elongation factor, mitochondrial IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:67,476,006...67,478,830
Ensembl chr10:67,475,968...67,479,077
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:5493219|PMID:11279105) RGD PMID:11279105 MGI:MGI:5493219 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Trex2 three prime repair exonuclease 2 ISO (PMID:11279105) RGD PMID:11279105 NCBI chr  X:157,374,305...157,375,913
Ensembl chr  X:157,374,305...157,375,913
JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:16622405)
MGI:MGI:2156622 (MGI:MGI:2157189|PMID:11756244), (MGI:MGI:2656673|PMID:12707040)
RGD PMID:11756244, PMID:12707040, PMID:16622405 MGI:MGI:2157189, MGI:MGI:2656673 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:165,922,893...165,935,822
Ensembl chr 5:165,922,915...165,935,821
JBrowse link
G Dffb DNA fragmentation factor subunit beta IDA
IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(PMID:15572351), (PMID:22253444)
InterPro
RGD
PMID:15572351, PMID:22253444, PMID:11425895, PMID:21873635 GO_REF:0000002, RGD:628524, RGD:13792537 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Dicer1 dicer 1 ribonuclease III IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 TAS
IBA
ISO
PMID:21873635
(PMID:23229555)
(MGI:MGI:2385551|PMID:12050166)
RGD PMID:12050166, PMID:23229555, PMID:9665719, PMID:21873635 MGI:MGI:2385551, RGD:728743, RGD:13792537 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Dnase2 deoxyribonuclease 2, lysosomal IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:26,022,855...26,025,523
Ensembl chr19:26,022,849...26,025,532
JBrowse link
G Dnase2b deoxyribonuclease 2 beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:252,436,363...252,475,506
Ensembl chr 2:252,436,332...252,451,999
JBrowse link
G Endog endonuclease G ISO
IBA
MGI:MGI:3034030|MGI:MGI:3514265 (MGI:MGI:3029597|PMID:14663139)
PMID:21873635
RGD PMID:14663139, PMID:21873635 MGI:MGI:3029597, RGD:13792537 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Exog exo/endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Foxl2 forkhead box L2 ISO (PMID:16153597) RGD PMID:16153597 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675
JBrowse link
base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07018191.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:46,296,206...46,297,243 JBrowse link
G AC095390.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:51,965,417...51,965,779 JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO
IBA
(PMID:8932386)
PMID:21873635
RGD PMID:8932386, PMID:21873635 RGD:13792537 NCBI chr15:27,849,943...27,852,083
Ensembl chr15:27,849,979...27,852,082
JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:23,146,085...23,166,676
Ensembl chr  X:23,146,085...23,166,675
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:9973627) RGD PMID:9973627 NCBI chr16:8,734,028...8,804,610
Ensembl chr16:8,734,035...8,804,610
JBrowse link
G Fen1 flap structure-specific endonuclease 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:226,251,516...226,256,160
Ensembl chr 1:226,251,518...226,255,886
JBrowse link
G Hmga1 high mobility group AT-hook 1 ISO
IBA
(PMID:19465398)
PMID:21873635
RGD PMID:19465398, PMID:21873635 RGD:13792537 NCBI chr20:7,132,501...7,140,155
Ensembl chr20:7,136,007...7,138,980
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
IBA
ISS
(PMID:19465398)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:19465398, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:MGI:3722031|PMID:17803946) RGD PMID:17803946 MGI:MGI:3722031 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:19713937)
Ensembl
UniProt
RGD
PMID:19713937, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr  X:21,474,627...21,603,348
Ensembl chr  X:21,499,934...21,598,876
JBrowse link
G Lig1 DNA ligase 1 ISO (PMID:19589734) RGD PMID:19589734 NCBI chr 1:75,356,212...75,394,757
Ensembl chr 1:75,356,220...75,394,758
JBrowse link
G LOC100362927 replication protein A3-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:51,965,390...51,965,816 JBrowse link
G Mpg N-methylpurine-DNA glycosylase IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:MGI:2148592|MGI:MGI:2675730 (MGI:MGI:2181327|PMID:9371767), (MGI:MGI:3028824|PMID:15177041)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:9371767, PMID:15177041, PMID:21873635 GO_REF:0000002, GO_REF:0000107, MGI:MGI:2181327, MGI:MGI:3028824, RGD:13792537 NCBI chr10:15,661,768...15,667,995
Ensembl chr10:15,661,608...15,668,022
JBrowse link
G Mutyh mutY DNA glycosylase IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 5:135,663,328...135,675,348
Ensembl chr 5:135,663,371...135,675,344
JBrowse link
G Neil1 nei-like DNA glycosylase 1 ISO
IBA
(PMID:17611195)
PMID:21873635
RGD PMID:17611195, PMID:21873635 RGD:13792537 NCBI chr 8:61,817,258...61,824,023
Ensembl chr 8:61,817,258...61,823,102
JBrowse link
G Neil2 nei-like DNA glycosylase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:46,371,780...46,382,730
Ensembl chr15:46,372,485...46,381,967
JBrowse link
G Neil3 nei-like DNA glycosylase 3 ISO
IBA
(PMID:23755964)
PMID:21873635
(MGI:MGI:4440390|PMID:20185759)
RGD PMID:20185759, PMID:23755964, PMID:21873635 MGI:MGI:4440390, RGD:13792537 NCBI chr16:41,079,444...41,138,505
Ensembl chr16:41,079,444...41,138,505
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase IDA
ISO
MGI:MGI:2386943 (MGI:MGI:1349233|PMID:10570187), (MGI:MGI:894433|PMID:9207108) RGD PMID:9207108, PMID:10570187, PMID:9801319 MGI:MGI:1349233, MGI:MGI:894433, RGD:729091 NCBI chr 4:145,282,828...145,289,367
Ensembl chr 4:145,282,797...145,289,326
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 ISO (MGI:MGI:2181257|PMID:11948190) RGD PMID:11948190 MGI:MGI:2181257 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 ISO (MGI:MGI:2181257|PMID:11948190) RGD PMID:11948190 MGI:MGI:2181257 NCBI chr15:27,739,416...27,749,650
Ensembl chr15:27,739,251...27,749,648
JBrowse link
G Polb DNA polymerase beta TAS
IBA
ISO
ISS
PMID:21873635
(PMID:16600869), (PMID:21362556)
GO_REF:0000024
RGD
UniProt
PMID:16600869, PMID:21362556, PMID:12388548, PMID:21873635 GO_REF:0000024, RGD:633643, RGD:13792537 NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
JBrowse link
G Polq DNA polymerase theta ISO (PMID:19188258) RGD PMID:19188258 NCBI chr11:66,585,860...66,695,369
Ensembl chr11:66,585,881...66,695,353
JBrowse link
G RGD1564836 similar to HMGA1b IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:33,349,178...33,349,519
Ensembl chr  X:33,349,206...33,349,481
JBrowse link
G Rpa1 replication protein A1 ISO (PMID:9765279) RGD PMID:9765279 NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
JBrowse link
G Rpa2 replication protein A2 NAS
ISS
ISO
GO_REF:0000024
(PMID:9765279)
UniProt
RGD
PMID:9765279, PMID:9045683 GO_REF:0000024, RGD:729744 NCBI chr 5:150,957,041...150,967,597
Ensembl chr 5:150,957,001...150,968,269
JBrowse link
G Rpa3 replication protein A3 ISO
IBA
(PMID:9765279)
PMID:21873635
RGD PMID:9765279, PMID:21873635 RGD:13792537 NCBI chr 4:34,279,320...34,282,351
Ensembl chr 4:34,279,320...34,282,351
JBrowse link
G Sirt6 sirtuin 6 ISO (MGI:MGI:3663736|PMID:16439206) RGD PMID:16439206 MGI:MGI:3663736 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
G Slc25a16 solute carrier family 25 member 16 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:27,283,383...27,308,069
Ensembl chr20:27,254,984...27,308,069
JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 ISO
IDA
(PMID:12161446)
PMID:12718543
RGD PMID:12161446, PMID:12718543 RGD:634191 NCBI chr 7:144,774,155...144,788,333
Ensembl chr 7:144,774,160...144,778,656
JBrowse link
G Tdg thymine-DNA glycosylase ISO (MGI:MGI:5287540|PMID:21817016)
(PMID:21862836), (PMID:22327402)
RGD PMID:21817016, PMID:21862836, PMID:22327402 MGI:MGI:5287540 NCBI chr 7:27,194,000...27,213,676
Ensembl chr 7:27,193,998...27,214,236
JBrowse link
G Ung uracil-DNA glycosylase IDA
ISO
TAS
(PMID:12161446) RGD PMID:12161446, PMID:12167490, PMID:11292851, PMID:15297456 RGD:634481, RGD:1599704, RGD:1599703 NCBI chr12:48,246,593...48,255,547
Ensembl chr12:48,246,569...48,254,822
JBrowse link
G Usp47 ubiquitin specific peptidase 47 ISO (PMID:21362556) RGD PMID:21362556 NCBI chr 1:176,854,589...176,937,763
Ensembl chr 1:176,854,653...176,937,763
JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:17611195) RGD PMID:17611195 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:61,749,767...61,793,641
Ensembl chr 5:61,749,767...61,792,928
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 TAS
IBA
IDA
PMID:21873635 RGD
GO_Central
PMID:11056294, PMID:21873635, PMID:17412650 RGD:727220, RGD:13792537, RGD:2302580 NCBI chr 1:81,412,635...81,441,680
Ensembl chr 1:81,413,353...81,441,678
JBrowse link
base-excision repair, AP site formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nthl1 nth-like DNA glycosylase 1 ISO
IBA
(PMID:15358233)
PMID:21873635
RGD PMID:15358233, PMID:21873635 RGD:13792537 NCBI chr10:13,996,660...14,002,827
Ensembl chr10:13,996,645...14,002,910
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:145,282,828...145,289,367
Ensembl chr 4:145,282,797...145,289,326
JBrowse link
G Tdg thymine-DNA glycosylase ISO
IBA
(PMID:11889051), (PMID:18512959)
PMID:21873635
RGD PMID:11889051, PMID:18512959, PMID:21873635 RGD:13792537 NCBI chr 7:27,194,000...27,213,676
Ensembl chr 7:27,193,998...27,214,236
JBrowse link
base-excision repair, AP site formation via deaminated base removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ung uracil-DNA glycosylase ISO
IBA
(PMID:18973764)
PMID:21873635
RGD PMID:18973764, PMID:21873635 RGD:13792537 NCBI chr12:48,246,593...48,255,547
Ensembl chr12:48,246,569...48,254,822
JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig3 DNA ligase 3 IDA
IBA
ISO
PMID:21873635
(PMID:19589734), (PMID:24674627)
RGD PMID:19589734, PMID:24674627, PMID:17412650, PMID:21873635 RGD:2302580, RGD:13792537 NCBI chr10:70,134,734...70,158,051
Ensembl chr10:70,134,729...70,158,055
JBrowse link
base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen ISO (MGI:MGI:3045901|PMID:15177179) RGD PMID:15177179 MGI:MGI:3045901 NCBI chr 3:124,880,698...124,884,570
Ensembl chr 3:124,880,698...124,884,570
JBrowse link
G Polb DNA polymerase beta ISO
IDA
(MGI:MGI:3045901|PMID:15177179) RGD PMID:15177179, PMID:17412650 MGI:MGI:3045901, RGD:2302580 NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO
IBA
IEA
(MGI:MGI:3045901|PMID:15177179)
PMID:21873635
(PMID:10559260), (PMID:10559261)
GO_REF:0000107
RGD
Ensembl
PMID:10559260, PMID:10559261, PMID:15177179, PMID:21873635 GO_REF:0000107, MGI:MGI:3045901, RGD:13792537 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO
IBA
(PMID:10559260)
PMID:21873635
RGD PMID:10559260, PMID:21873635 RGD:13792537 NCBI chr12:52,403,533...52,452,075
Ensembl chr12:52,403,529...52,452,040
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit ISO (PMID:15177179) RGD PMID:15177179 NCBI chr 1:141,172,117...141,188,893
Ensembl chr 1:141,172,531...141,188,031
JBrowse link
G Poll DNA polymerase lambda ISO
ISS
(PMID:19806195)
GO_REF:0000024
RGD
UniProt
PMID:19806195 GO_REF:0000024 NCBI chr 1:265,290,337...265,298,847
Ensembl chr 1:265,290,339...265,298,797
JBrowse link
C-5 methylation of cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO (MGI:MGI:5811689|PMID:27856912) RGD PMID:27856912 MGI:MGI:5811689 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 ISO (MGI:MGI:5762940|PMID:23560077) RGD PMID:23560077 MGI:MGI:5762940 NCBI chr 6:11,014,596...11,063,509
Ensembl chr 6:11,022,034...11,063,092
JBrowse link
chiasma assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting protein C-terminal helicase 1 ISO MGI:MGI:4129733 (MGI:MGI:5700253|PMID:26490168) RGD PMID:26490168 MGI:MGI:5700253 NCBI chr10:73,507,009...73,632,742
Ensembl chr10:73,507,100...73,629,581
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 ISO MGI:MGI:3050548 (MGI:MGI:3757893|PMID:17784788), (MGI:MGI:5545848|PMID:24390283) RGD PMID:17784788, PMID:24390283 MGI:MGI:3757893, MGI:MGI:5545848 NCBI chr15:27,720,220...27,736,528
Ensembl chr15:27,720,223...27,733,785
JBrowse link
G Rnf212 ring finger protein 212 ISO (MGI:MGI:5545848|PMID:24390283) RGD PMID:24390283 MGI:MGI:5545848 NCBI chr14:1,959,148...1,998,077
Ensembl chr14:1,959,610...1,998,102
JBrowse link
G Sycp1 synaptonemal complex protein 1 ISO
IBA
IEA
MGI:MGI:109542 (MGI:MGI:5315075|PMID:22164254)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:22164254, PMID:21873635 GO_REF:0000107, MGI:MGI:5315075, RGD:13792537 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO MGI:MGI:105931 (MGI:MGI:2179610|PMID:12004129), (MGI:MGI:5315075|PMID:22164254) RGD PMID:12004129, PMID:22164254 MGI:MGI:2179610, MGI:MGI:5315075 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link
G Tex11 testis expressed 11 ISO MGI:MGI:3526163 (MGI:MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:MGI:3774244 NCBI chr  X:70,670,212...70,946,621
Ensembl chr  X:70,670,322...70,946,565
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B ISO MGI:MGI:2183933 (MGI:MGI:2450033|PMID:12556476) RGD PMID:12556476 MGI:MGI:2450033 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
chromosome breakage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:19549901)
GO_REF:0000024
RGD
UniProt
PMID:19549901 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 ISO (MGI:MGI:5917601|PMID:28691929) RGD PMID:28691929 MGI:MGI:5917601 NCBI chr19:42,960,597...42,971,894
Ensembl chr19:42,964,586...42,972,101
JBrowse link
DNA ADP-ribosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly (ADP-ribose) polymerase 1 ISS
ISO
GO_REF:0000024
(PMID:27471034)
UniProt
RGD
PMID:27471034 GO_REF:0000024 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 ISO (PMID:27471034) RGD PMID:27471034 NCBI chr15:27,739,416...27,749,650
Ensembl chr15:27,739,251...27,749,648
JBrowse link
G Parp3 poly (ADP-ribose) polymerase family, member 3 ISO (PMID:29361132) RGD PMID:29361132 NCBI chr 8:115,173,440...115,179,543
Ensembl chr 8:115,173,453...115,179,191
JBrowse link
DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:21,851,657...21,854,773
Ensembl chr 1:21,851,660...21,854,773
JBrowse link
G Dntt DNA nucleotidylexotransferase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:260,289,626...260,321,174
Ensembl chr 1:260,289,589...260,321,320
JBrowse link
G Lig1 DNA ligase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:75,356,212...75,394,757
Ensembl chr 1:75,356,220...75,394,758
JBrowse link
G Lig3 DNA ligase 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:70,134,734...70,158,051
Ensembl chr10:70,134,729...70,158,055
JBrowse link
G Lig4 DNA ligase 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
JBrowse link
G LOC100911727 DNA ligase 1-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:75,224,143...75,264,441
Ensembl chr 1:75,233,703...75,264,293
JBrowse link
G Lox lysyl oxidase ISO MGI:MGI:3610732 (MGI:MGI:5603515|PMID:19458888) RGD PMID:19458888 MGI:MGI:5603515 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Pam16 presequence translocase associated motor 16 ISO (MGI:MGI:4837988|PMID:20719856) RGD PMID:20719856 MGI:MGI:4837988 NCBI chr10:11,146,359...11,153,936
Ensembl chr10:11,146,359...11,153,936
JBrowse link
G Phb prohibitin ISO (MGI:MGI:3814796|PMID:18480465) RGD PMID:18480465 MGI:MGI:3814796 NCBI chr10:83,476,107...83,488,878
Ensembl chr10:83,476,107...83,488,878
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit IMP
IEA
GO_REF:0000108 GOC PMID:9099618 GO_REF:0000108, RGD:7247275 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:221,297,417...221,321,601
Ensembl chr 1:221,273,538...221,321,570
JBrowse link
G Polb DNA polymerase beta IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit IMP
ISO
IEA
(MGI:MGI:6383350|PMID:11595739)
GO_REF:0000107
(PMID:11595739)
RGD
Ensembl
PMID:11595739, PMID:11959615 GO_REF:0000107, MGI:MGI:6383350, RGD:7247274 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit ISO (PMID:11595739)
(MGI:MGI:6383350|PMID:11595739)
RGD PMID:11595739 MGI:MGI:6383350 NCBI chr14:86,111,416...86,117,578
Ensembl chr14:86,111,294...86,117,578
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit ISO (PMID:11595739)
(MGI:MGI:6383350|PMID:11595739)
RGD PMID:11595739 MGI:MGI:6383350 NCBI chr 1:165,085,142...165,122,385
Ensembl chr 1:165,083,622...165,123,455
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit IMP RGD PMID:11959615 RGD:7247274 NCBI chr12:52,403,533...52,452,075
Ensembl chr12:52,403,529...52,452,040
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:141,172,117...141,188,893
Ensembl chr 1:141,172,531...141,188,031
JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:94,968,836...94,979,259
Ensembl chr10:94,968,836...94,979,259
JBrowse link
G Poll DNA polymerase lambda ISO
ISS
(PMID:19806195)
GO_REF:0000024
RGD
UniProt
PMID:19806195 GO_REF:0000024 NCBI chr 1:265,290,337...265,298,847
Ensembl chr 1:265,290,339...265,298,797
JBrowse link
G Polm DNA polymerase mu IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:86,069,378...86,079,327
Ensembl chr14:86,069,016...86,078,954
JBrowse link
G Polq DNA polymerase theta IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:66,585,860...66,695,369
Ensembl chr11:66,585,881...66,695,353
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 ISO
IEA
(MGI:MGI:5518963|PMID:23651497)
GO_REF:0000107
RGD
Ensembl
PMID:23651497 GO_REF:0000107, MGI:MGI:5518963 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Sphk1 sphingosine kinase 1 ISO (MGI:MGI:5518963|PMID:23651497) RGD PMID:23651497 MGI:MGI:5518963 NCBI chr10:105,498,728...105,504,401
Ensembl chr10:105,498,728...105,504,393
JBrowse link
G Tert telomerase reverse transcriptase ISO (PMID:19701182), (PMID:9398860) RGD PMID:9398860, PMID:19701182 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
G Tk1 thymidine kinase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:106,817,556...106,828,888
Ensembl chr10:106,817,601...106,828,884
JBrowse link
DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffb DNA fragmentation factor subunit beta ISO (PMID:19944011) RGD PMID:19944011 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Dnase1 deoxyribonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:11,757,681...11,760,672
Ensembl chr10:11,757,682...11,760,620
JBrowse link
G Dnase1l1 deoxyribonuclease 1-like 1 IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr  X:156,429,521...156,438,066
Ensembl chr  X:156,429,585...156,438,066
JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 ISO
IBA
MGI:MGI:5308556 (MGI:MGI:5308183|PMID:21307874)
PMID:21873635
RGD PMID:21307874, PMID:21873635 MGI:MGI:5308183, RGD:13792537 NCBI chr10:13,812,335...13,814,514
Ensembl chr10:13,812,707...13,814,304
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO MGI:MGI:3052754|MGI:MGI:5751220 (MGI:MGI:3834787|PMID:18724932), (MGI:MGI:4414715|PMID:19923437), (MGI:MGI:4848004|PMID:20871604), (MGI:MGI:5562498|PMID:23993650), (MGI:MGI:5637600|PMID:25848017) RGD PMID:18724932, PMID:19923437, PMID:20871604, PMID:23993650, PMID:25848017 MGI:MGI:3834787, MGI:MGI:4414715, MGI:MGI:4848004, MGI:MGI:5562498, MGI:MGI:5637600 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
DNA catabolic process, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase1 deoxyribonuclease 1 ISO
IBA
ISS
(MGI:MGI:6094744|PMID:29191910)
PMID:21873635
RGD PMID:29191910, PMID:21873635, PMID:29191910 MGI:MGI:6094744, RGD:13792537, RGD:13464261 NCBI chr10:11,757,681...11,760,672
Ensembl chr10:11,757,682...11,760,620
JBrowse link
G Dnase1l1 deoxyribonuclease 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,429,521...156,438,066
Ensembl chr  X:156,429,585...156,438,066
JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,812,335...13,814,514
Ensembl chr10:13,812,707...13,814,304
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 ISO
IBA
ISS
(MGI:MGI:6094744|PMID:29191910)
PMID:21873635
RGD PMID:29191910, PMID:21873635, PMID:29191910 MGI:MGI:6094744, RGD:13792537, RGD:13464261 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Endog endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Exog exo/endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Fbh1 F-box DNA helicase 1 ISO (PMID:23361013) RGD PMID:23361013 NCBI chr17:70,399,093...70,437,151
Ensembl chr17:70,399,049...70,437,144
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit ISO (PMID:23361013) RGD PMID:23361013 NCBI chr 1:220,862,474...220,867,973
Ensembl chr 1:220,862,386...220,867,815
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease ISO
IBA
(PMID:21602889)
PMID:21873635
RGD PMID:21602889, PMID:21873635 RGD:13792537 NCBI chr 3:5,500,578...5,510,908
Ensembl chr 3:5,500,589...5,510,908
JBrowse link
G Setmar SET domain and mariner transposase fusion gene ISO (PMID:20521842), (PMID:21491884), (PMID:24573677) RGD PMID:20521842, PMID:21491884, PMID:24573677 NCBI chr 4:140,092,346...140,104,495
Ensembl chr 4:140,092,352...140,105,316
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:170,991,573...171,008,226
Ensembl chr 3:170,994,038...171,013,185
JBrowse link
DNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:189,540,145...189,549,891
Ensembl chr 1:189,540,145...189,549,891
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,406,009...136,533,408
Ensembl chr 5:136,406,130...136,533,389
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 ISO
IBA
(PMID:11401564)
PMID:21873635
RGD PMID:11401564, PMID:21873635 RGD:13792537 NCBI chr 1:140,602,553...140,608,892
Ensembl chr 1:140,601,791...140,608,946
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease ISO
IBA
(PMID:21602889)
PMID:21873635
RGD PMID:21602889, PMID:21873635 RGD:13792537 NCBI chr 3:5,500,578...5,510,908
Ensembl chr 3:5,500,589...5,510,908
JBrowse link
G Trex1 three prime repair exonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Trex2 three prime repair exonuclease 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:157,374,305...157,375,913
Ensembl chr  X:157,374,305...157,375,913
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO (PMID:15565158) RGD PMID:15565158 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
DNA cytosine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IDA RGD PMID:12697753 RGD:1358271 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 ISO
IBA
(PMID:16571802), (PMID:21835787)
PMID:21873635
RGD PMID:16571802, PMID:21835787, PMID:21873635 RGD:13792537 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 ISO (PMID:26945630) RGD PMID:26945630 NCBI chr15:39,865,094...39,894,122
Ensembl chr15:39,882,210...39,893,979
JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530) RGD PMID:18603530 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase ISO
IBA
(PMID:18432238)
PMID:21873635
RGD PMID:18432238, PMID:21873635 RGD:13792537 NCBI chr12:48,257,575...48,262,244
Ensembl chr12:48,257,609...48,262,243
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase ISS
ISO
GO_REF:0000024
(PMID:16858410), (PMID:22055184)
UniProt
RGD
PMID:16858410, PMID:22055184 GO_REF:0000024 NCBI chr 3:82,874,242...82,907,467
Ensembl chr 3:82,874,248...82,906,581
JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22055184)
Ensembl
UniProt
RGD
PMID:22055184 GO_REF:0000024, GO_REF:0000107 NCBI chr20:55,253,670...55,557,249
Ensembl chr20:55,253,686...55,556,473
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase ISO
ISS
IEA
(MGI:MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:20376003)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:18775698, PMID:20376003 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3817348 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase IDA
ISO
(MGI:MGI:50172|PMID:1554415) RGD PMID:1554415, PMID:15025514 MGI:MGI:50172, RGD:2316914 NCBI chr 1:209,237,255...209,464,189
Ensembl chr 1:209,237,233...209,464,190
JBrowse link
DNA deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc3 exosome component 3 ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc4 exosome component 4 ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 7:117,390,302...117,393,044
Ensembl chr 7:117,390,285...117,393,719
JBrowse link
G Exosc5 exosome component 5 ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 1:82,452,104...82,461,607
Ensembl chr 1:82,452,469...82,461,606
JBrowse link
G Exosc6 exosome component 6 ISO (PMID:21255825) RGD PMID:21255825 NCBI chr19:43,190,879...43,193,164
Ensembl chr19:43,191,390...43,192,208
JBrowse link
DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO
IBA
(PMID:21496894)
PMID:21873635
RGD PMID:21496894, PMID:21873635 RGD:13792537 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530), (PMID:30017583), (PMID:30392959) RGD PMID:18603530, PMID:30017583, PMID:30392959 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase ISO (MGI:MGI:6323482|PMID:30982744) RGD PMID:30982744 MGI:MGI:6323482 NCBI chr12:23,568,204...23,574,133
Ensembl chr12:23,568,094...23,574,125
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO
ISS
(PMID:21496894)
GO_REF:0000024
RGD
UniProt
PMID:21496894 GO_REF:0000024 NCBI chr15:27,849,943...27,852,083
Ensembl chr15:27,849,979...27,852,082
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO
IBA
ISS
(MGI:MGI:5285126|PMID:21496894)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21496894, PMID:21873635 GO_REF:0000024, MGI:MGI:5285126, RGD:13792537 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 ISO
IBA
(PMID:21496894)
PMID:21873635
RGD PMID:21496894, PMID:21873635 RGD:13792537 NCBI chr 9:14,529,218...14,542,731
Ensembl chr 9:14,529,218...14,542,731
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase ISO (PMID:18775698)
(MGI:MGI:3817348|PMID:18775698), (MGI:MGI:4430814|PMID:17991826)
RGD PMID:17991826, PMID:18775698 MGI:MGI:3817348, MGI:MGI:4430814 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Tdg thymine-DNA glycosylase ISO (MGI:MGI:5141157|PMID:21722948), (MGI:MGI:5287540|PMID:21817016), (MGI:MGI:5487523|PMID:21278727) RGD PMID:21278727, PMID:21722948, PMID:21817016 MGI:MGI:5141157, MGI:MGI:5287540, MGI:MGI:5487523 NCBI chr 7:27,194,000...27,213,676
Ensembl chr 7:27,193,998...27,214,236
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO
IBA
(PMID:21496894)
PMID:21873635
(MGI:MGI:3844762|PMID:19372391), (MGI:MGI:4822076|PMID:20639862), (MGI:MGI:5285126|PMID:21496894)
RGD PMID:19372391, PMID:20639862, PMID:21496894, PMID:21873635 MGI:MGI:3844762, MGI:MGI:4822076, MGI:MGI:5285126, RGD:13792537 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO
IBA
(MGI:MGI:4822076|PMID:20639862)
PMID:21873635
(PMID:24315485)
RGD PMID:20639862, PMID:24315485, PMID:21873635 MGI:MGI:4822076, RGD:13792537 NCBI chr 2:238,719,389...238,802,975
Ensembl chr 2:238,720,835...238,803,024
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 ISO
IBA
(MGI:MGI:4822076|PMID:20639862), (MGI:MGI:5289702|PMID:21892189), (MGI:MGI:5432962|PMID:22722204), (MGI:MGI:5465527|PMID:21407207), (MGI:MGI:5525037|PMID:23690950)
PMID:21873635
RGD PMID:20639862, PMID:21407207, PMID:21892189, PMID:22722204, PMID:23690950, PMID:21873635 MGI:MGI:4822076, MGI:MGI:5289702, MGI:MGI:5432962, MGI:MGI:5465527, MGI:MGI:5525037, RGD:13792537 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm-tail PG-rich repeat containing 4 ISO
IBA
(MGI:MGI:5762940|PMID:23560077)
PMID:21873635
RGD PMID:23560077, PMID:21873635 MGI:MGI:5762940, RGD:13792537 NCBI chr 6:11,014,596...11,063,509
Ensembl chr 6:11,022,034...11,063,092
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 ISO (MGI:MGI:5289702|PMID:21892189), (MGI:MGI:5432962|PMID:22722204), (MGI:MGI:5465527|PMID:21407207) RGD PMID:21407207, PMID:21892189, PMID:22722204 MGI:MGI:5289702, MGI:MGI:5432962, MGI:MGI:5465527 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263
JBrowse link
DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase ISO (PMID:21325134) RGD PMID:21325134 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 ISS
IEA
GO_REF:0000024
GO_REF:0000107
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107
G Exd2 exonuclease 3'-5' domain containing 2 ISO (PMID:26807646) RGD PMID:26807646 NCBI chr 6:104,017,620...104,051,442
Ensembl chr 6:104,017,607...104,051,446
JBrowse link
G Setmar SET domain and mariner transposase fusion gene ISO (PMID:21491884) RGD PMID:21491884 NCBI chr 4:140,092,346...140,104,495
Ensembl chr 4:140,092,352...140,105,316
JBrowse link
G Slc25a16 solute carrier family 25 member 16 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:27,283,383...27,308,069
Ensembl chr20:27,254,984...27,308,069
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` ISO
ISS
(PMID:22960744)
GO_REF:0000024
RGD
UniProt
PMID:22960744 GO_REF:0000024 NCBI chr 4:95,884,020...95,945,248
Ensembl chr 4:95,884,743...95,945,248
JBrowse link
G Ube2n ubiquitin-conjugating enzyme E2N ISO (PMID:17349954) RGD PMID:17349954 NCBI chr 7:36,610,147...36,640,190
Ensembl chr 7:36,610,147...36,640,189
JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO (PMID:17349954) RGD PMID:17349954 NCBI chr11:89,557,273...89,591,175
Ensembl chr11:89,557,273...89,591,175
JBrowse link
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07031480.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr18:15,148,983...15,167,311 JBrowse link
G Rad52 RAD52 homolog, DNA repair protein ISO (PMID:19506022)
(MGI:MGI:5619739|PMID:22912580)
RGD PMID:19506022, PMID:22912580 MGI:MGI:5619739 NCBI chr 4:152,429,826...152,451,875
Ensembl chr 4:152,430,187...152,451,609
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(PMID:18716619), (PMID:19202191)
InterPro
RGD
PMID:18716619, PMID:19202191, PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr18:3,134,630...3,227,702
Ensembl chr18:3,162,543...3,227,688
JBrowse link
G RGD1565844 similar to RIKEN cDNA 1700045I19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:32,495,573...32,496,646
Ensembl chr  X:32,495,809...32,496,549
JBrowse link
G Rnf138 ring finger protein 138 ISO
IBA
ISS
(PMID:26502057)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:26502057, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:15,146,925...15,167,361 JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit ISO (PMID:19595721) RGD PMID:19595721 NCBI chr 1:198,114,514...198,120,061
Ensembl chr 1:198,112,245...198,120,061
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit ISO (PMID:19595721) RGD PMID:19595721 NCBI chr10:11,787,756...11,808,326
Ensembl chr10:11,786,121...11,807,928
JBrowse link
DNA hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IMP RGD PMID:21682946 RGD:9588311 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Morc1 MORC family CW-type zinc finger 1 ISO MGI:MGI:1857787 (MGI:MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:MGI:5694015 NCBI chr11:54,762,654...55,044,581
Ensembl chr11:54,762,654...55,044,581
JBrowse link
DNA integration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 ISO (MGI:MGI:1344934|PMID:9465049) RGD PMID:9465049 MGI:MGI:1344934 NCBI chr 1:220,744,195...220,746,224
Ensembl chr 1:220,744,195...220,746,224
JBrowse link
G Gin1 gypsy retrotransposon integrase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:111,200,285...111,220,738
Ensembl chr 9:111,199,141...111,220,693
JBrowse link
G Nynrin NYN domain and retroviral integrase containing IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:34,520,040...34,541,671
Ensembl chr15:34,520,142...34,539,930
JBrowse link
G Setmar SET domain and mariner transposase fusion gene ISO (PMID:16332963), (PMID:24573677) RGD PMID:16332963, PMID:24573677 NCBI chr 4:140,092,346...140,104,495
Ensembl chr 4:140,092,352...140,105,316
JBrowse link
DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aptx aprataxin ISO (MGI:MGI:3665365|PMID:16964241) RGD PMID:16964241 MGI:MGI:3665365 NCBI chr 5:56,987,714...57,009,481
Ensembl chr 5:56,987,909...57,008,859
JBrowse link
G Lig1 DNA ligase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:75,356,212...75,394,757
Ensembl chr 1:75,356,220...75,394,758
JBrowse link
G Lig3 DNA ligase 3 ISO
IBA
(PMID:7565692)
PMID:21873635
RGD PMID:7565692, PMID:21873635 RGD:13792537 NCBI chr10:70,134,734...70,158,051
Ensembl chr10:70,134,729...70,158,055
JBrowse link
G Lig4 DNA ligase 4 IDA
ISO
MGI:MGI:1857732 (MGI:MGI:3052572|PMID:15194694), (MGI:MGI:3615734|PMID:15968270)
(PMID:12517771)
RGD PMID:12517771, PMID:15194694, PMID:15968270, PMID:9600082 MGI:MGI:3052572, MGI:MGI:3615734, RGD:1601271 NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
JBrowse link
G LOC100911727 DNA ligase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:75,224,143...75,264,441
Ensembl chr 1:75,233,703...75,264,293
JBrowse link
G Top2a DNA topoisomerase II alpha IEA
ISO
GO_REF:0000107
(PMID:15491148)
Ensembl
RGD
PMID:15491148 GO_REF:0000107 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 ISO (MGI:MGI:3052572|PMID:15194694) RGD PMID:15194694 MGI:MGI:3052572 NCBI chr 2:18,674,496...18,927,463
Ensembl chr 2:18,677,220...18,927,365
JBrowse link
DNA ligation involved in DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 ISO MGI:MGI:1857732 (MGI:MGI:1312981|PMID:9823897) RGD PMID:9823897 MGI:MGI:1312981 NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
JBrowse link
DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 ISO (PMID:9600082) RGD PMID:9600082 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb2 high mobility group box 2 ISO (PMID:9600082) RGD PMID:9600082 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Lig1 DNA ligase 1 NOT IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 1:75,356,212...75,394,757
Ensembl chr 1:75,356,220...75,394,758
JBrowse link
G Lig3 DNA ligase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:70,134,734...70,158,051
Ensembl chr10:70,134,729...70,158,055
JBrowse link
G Lig4 DNA ligase 4 ISO
IBA
MGI:MGI:1857732 (MGI:MGI:1312981|PMID:9823897)
PMID:21873635
(PMID:12517771)
RGD PMID:9823897, PMID:12517771, PMID:21873635 MGI:MGI:1312981, RGD:13792537 NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
JBrowse link
G LOC100911727 DNA ligase 1-like NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:75,224,143...75,264,441
Ensembl chr 1:75,233,703...75,264,293
JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr  X:115,351,012...115,351,755
Ensembl chr  X:115,351,114...115,351,755
JBrowse link
G Paxx PAXX, non-homologous end joining factor ISO
IBA
(PMID:25574025)
PMID:21873635
RGD PMID:25574025, PMID:21873635 RGD:13792537 NCBI chr 3:2,678,987...2,681,668
Ensembl chr 3:2,678,956...2,680,622
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 ISO
IBA
(PMID:12517771)
PMID:21873635
RGD PMID:12517771, PMID:21873635 RGD:13792537 NCBI chr 2:18,674,496...18,927,463
Ensembl chr 2:18,677,220...18,927,365
JBrowse link
DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein ISO (PMID:12665582) RGD PMID:12665582 NCBI chr 4:170,476,998...170,563,063
Ensembl chr 4:170,518,673...170,559,532
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A ISO (MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3852588|PMID:19578370) RGD PMID:16085498, PMID:19578370 MGI:MGI:3587127, MGI:MGI:3852588 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Bend3 BEN domain containing 3 ISO (PMID:26100909) RGD PMID:26100909 NCBI chr20:48,248,193...48,270,905
Ensembl chr20:48,248,455...48,268,147
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO (MGI:MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:MGI:5522578 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Ctcf CCCTC-binding factor IEA
ISO
GO_REF:0000107
(MGI:MGI:2450195|PMID:12461525), (MGI:MGI:5522578|PMID:24105743)
Ensembl
RGD
PMID:12461525, PMID:24105743 GO_REF:0000107, MGI:MGI:2450195, MGI:MGI:5522578 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:29115507 RGD:25823175 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO MGI:MGI:1930971 (MGI:MGI:2152690|PMID:11399088), (MGI:MGI:3655888|PMID:16887828), (MGI:MGI:5522578|PMID:24105743) RGD PMID:11399088, PMID:16887828, PMID:24105743 MGI:MGI:2152690, MGI:MGI:3655888, MGI:MGI:5522578 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISS
ISO
PMID:12138111
(PMID:12138111), (PMID:19786833), (PMID:23042785), (PMID:30478443)
MGI:MGI:1261819 (MGI:MGI:2152692|PMID:11399089), (MGI:MGI:2178074|PMID:11934864), (MGI:MGI:3768461|PMID:17938196)
RGD PMID:11399089, PMID:11934864, PMID:12138111, PMID:17938196, PMID:19786833, PMID:23042785, PMID:30478443, PMID:12138111 MGI:MGI:2152692, MGI:MGI:2178074, MGI:MGI:3768461, RGD:8554662 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO MGI:MGI:1261827|MGI:MGI:1859287|MGI:MGI:3047833 (MGI:MGI:3623538|PMID:16543361), (MGI:MGI:3768461|PMID:17938196), (MGI:MGI:5320860|PMID:22133874) RGD PMID:16543361, PMID:17938196, PMID:22133874 MGI:MGI:3623538, MGI:MGI:3768461, MGI:MGI:5320860 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Dnmt3l DNA methyltransferase 3 like ISO MGI:MGI:2155766 (MGI:MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:MGI:5694015 NCBI chr20:11,344,513...11,359,090
Ensembl chr20:11,344,514...11,359,090
JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 ISO (MGI:MGI:3826717|PMID:18818694) RGD PMID:18818694 MGI:MGI:3826717 NCBI chr 3:1,966,974...2,123,858
Ensembl chr 3:1,960,957...2,123,820
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO (MGI:MGI:3826717|PMID:18818694) RGD PMID:18818694 MGI:MGI:3826717 NCBI chr20:4,576,033...4,592,980
Ensembl chr20:4,576,057...4,592,980
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO (MGI:MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:MGI:5522578 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
JBrowse link
G Gnas GNAS complex locus ISO MGI:MGI:4459474 (MGI:MGI:4454202|PMID:20427744) RGD PMID:20427744 MGI:MGI:4454202 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Hells helicase, lymphoid specific ISO
IBA
MGI:MGI:2178586 (MGI:MGI:2153312|PMID:11711429)
PMID:21873635
RGD PMID:11711429, PMID:21873635 MGI:MGI:2153312, RGD:13792537 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO (MGI:MGI:3625774|PMID:16618927) RGD PMID:16618927 MGI:MGI:3625774 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971
JBrowse link
G Kmt2e lysine methyltransferase 2E ISO (MGI:MGI:3834766|PMID:18854576) RGD PMID:18854576 MGI:MGI:3834766 NCBI chr 4:8,187,751...8,255,578
Ensembl chr 4:8,187,751...8,255,514
JBrowse link
G LOC100911660 lymphocyte-specific helicase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,614,688...257,660,184
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G Mta2 metastasis associated 1 family, member 2 ISO (MGI:MGI:4888087|PMID:20720167) RGD PMID:20720167 MGI:MGI:4888087 NCBI chr 1:225,140,863...225,149,584
Ensembl chr 1:225,140,863...225,149,583
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IC PMID:20424322 BHF-UCL PMID:20424322 RGD:10054082 NCBI chr17:66,210,444...66,295,014
Ensembl chr17:66,210,461...66,295,014
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO
ISS
(MGI:MGI:5512657|PMID:24074862)
GO_REF:0000024
RGD
UniProt
PMID:24074862 GO_REF:0000024, MGI:MGI:5512657 NCBI chr 1:37,743,089...37,774,485
Ensembl chr 1:37,743,147...37,774,015
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D ISO (MGI:MGI:5551345|PMID:24135283) RGD PMID:24135283 MGI:MGI:5551345 NCBI chr10:72,909,550...72,945,884
Ensembl chr10:72,909,550...72,945,884
JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IEA
ISO
GO_REF:0000107
MGI:MGI:1857157|MGI:MGI:3613486|MGI:MGI:5566775 (MGI:MGI:49689|PMID:1606615), (MGI:MGI:6270117|PMID:29117290)
Ensembl
RGD
PMID:1606615, PMID:29117290 GO_REF:0000107, MGI:MGI:49689, MGI:MGI:6270117 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO MGI:MGI:1261819 (MGI:MGI:1347183|PMID:10555141), (MGI:MGI:3045942|PMID:15215868), (MGI:MGI:5014027|PMID:20385583) RGD PMID:10555141, PMID:15215868, PMID:20385583 MGI:MGI:1347183, MGI:MGI:3045942, MGI:MGI:5014027 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO MGI:MGI:1261827 (MGI:MGI:1347183|PMID:10555141), (PMID:18814855) RGD PMID:10555141, PMID:18814855 MGI:MGI:1347183 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Trim28 tripartite motif-containing 28 ISO MGI:MGI:1928907 (MGI:MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:MGI:5319411 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Zfp57 zinc finger protein 57 ISO
ISS
(PMID:18622393)
GO_REF:0000024
(MGI:MGI:3826319|PMID:18854139)
RGD
UniProt
PMID:18622393, PMID:18854139 GO_REF:0000024, MGI:MGI:3826319 NCBI chr20:2,014,177...2,020,488
Ensembl chr20:2,014,170...2,020,537
JBrowse link
DNA methylation involved in gamete generation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 ISO (MGI:MGI:4356194|PMID:19730684) RGD PMID:19730684 MGI:MGI:4356194 NCBI chr 4:45,358,574...45,414,177
Ensembl chr 4:45,358,574...45,414,177
JBrowse link
G Ctcfl CCCTC-binding factor like ISO (MGI:MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:MGI:3692841 NCBI chr 3:171,145,203...171,168,375
Ensembl chr 3:171,145,584...171,166,454
JBrowse link
G Ddx4 DEAD-box helicase 4 ISO
ISS
(MGI:MGI:4443217|PMID:20439430)
GO_REF:0000024
RGD
UniProt
PMID:20439430 GO_REF:0000024, MGI:MGI:4443217 NCBI chr 2:44,447,610...44,504,263
Ensembl chr 2:44,447,573...44,504,354
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO (MGI:MGI:3045942|PMID:15215868) RGD PMID:15215868 MGI:MGI:3045942 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3l DNA methyltransferase 3 like ISO
IEA
ISS
(MGI:MGI:3054275|PMID:15318244)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15318244 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3054275 NCBI chr20:11,344,513...11,359,090
Ensembl chr20:11,344,514...11,359,090
JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 ISO
ISS
(MGI:MGI:5439219|PMID:22902560)
GO_REF:0000024
RGD
UniProt
PMID:22902560 GO_REF:0000024, MGI:MGI:5439219 NCBI chr12:24,365,941...24,438,088
Ensembl chr12:24,367,199...24,438,019
JBrowse link
G Kdm1b lysine demethylase 1B ISO MGI:MGI:4359289 (MGI:MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:MGI:4358629 NCBI chr17:17,987,972...18,028,808
Ensembl chr17:17,987,972...18,028,808
JBrowse link
G Mael maelstrom spermatogenic transposon silencer ISO (MGI:MGI:4417983|PMID:20011505) RGD PMID:20011505 MGI:MGI:4417983 NCBI chr13:84,412,569...84,452,140
Ensembl chr13:84,383,670...84,452,181
JBrowse link
G Morc1 MORC family CW-type zinc finger 1 ISO MGI:MGI:1857787 (MGI:MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:MGI:5694015 NCBI chr11:54,762,654...55,044,581
Ensembl chr11:54,762,654...55,044,581
JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 ISO (MGI:MGI:4457283|PMID:20534472) RGD PMID:20534472 MGI:MGI:4457283 NCBI chr 7:129,973,391...130,039,306
Ensembl chr 7:129,973,480...130,037,344
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 ISO (MGI:MGI:3778312|PMID:18381894), (MGI:MGI:3815367|PMID:18922463) RGD PMID:18381894, PMID:18922463 MGI:MGI:3778312, MGI:MGI:3815367 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:3778312|PMID:18381894), (MGI:MGI:3815367|PMID:18922463)
UniProt
RGD
PMID:18381894, PMID:18922463 GO_REF:0000024, MGI:MGI:3778312, MGI:MGI:3815367 NCBI chr 8:13,208,774...13,251,970
Ensembl chr 8:13,208,774...13,251,812
JBrowse link
G Pld6 phospholipase D family, member 6 ISO (MGI:MGI:4943610|PMID:21397847) RGD PMID:21397847 MGI:MGI:4943610 NCBI chr10:46,142,313...46,145,774
Ensembl chr10:46,142,801...46,145,548
JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO
ISS
(MGI:MGI:3692841|PMID:17048991)
GO_REF:0000024
RGD
UniProt
PMID:17048991 GO_REF:0000024, MGI:MGI:3692841 NCBI chr19:38,189,605...38,237,155
Ensembl chr19:38,189,605...38,237,308
JBrowse link
G Tdrd1 tudor domain containing 1 ISO (MGI:MGI:4356231|PMID:19465913) RGD PMID:19465913 MGI:MGI:4356231 NCBI chr 1:277,639,670...277,685,236
Ensembl chr 1:277,641,512...277,685,257
JBrowse link
G Tdrd12 tudor domain containing 12 ISO (MGI:MGI:5516419|PMID:24067652) RGD PMID:24067652 MGI:MGI:5516419 NCBI chr 1:91,739,126...91,811,577
Ensembl chr 1:91,740,933...91,811,547
JBrowse link
G Tdrd5 tudor domain containing 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4946318|PMID:21383078)
Ensembl
UniProt
RGD
PMID:21383078 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4946318 NCBI chr13:73,872,637...73,922,640
Ensembl chr13:73,872,621...73,921,969
JBrowse link
G Tdrd9 tudor domain containing 9 ISO
ISS
(MGI:MGI:4418580|PMID:20059948)
GO_REF:0000024
RGD
UniProt
PMID:20059948 GO_REF:0000024, MGI:MGI:4418580 NCBI chr 6:136,536,636...136,650,481
Ensembl chr 6:136,536,736...136,649,859
JBrowse link
G Tdrkh tudor and KH domain containing ISO (MGI:MGI:5494327|PMID:23714778) RGD PMID:23714778 MGI:MGI:5494327 NCBI chr 2:195,649,813...195,674,217
Ensembl chr 2:195,651,930...195,674,616
JBrowse link
DNA methylation on adenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase like 4 ISO (MGI:MGI:6323482|PMID:30982744)
(PMID:32183942)
RGD PMID:30982744, PMID:32183942 MGI:MGI:6323482 NCBI chr 9:119,871,519...119,953,248
Ensembl chr 9:119,873,170...119,897,268
JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 NOT ISO (PMID:30017583)
(PMID:30392959), (PMID:31632689), (PMID:31636962)
RGD PMID:30017583, PMID:30392959, PMID:31632689, PMID:31636962 NCBI chr11:27,004,335...27,016,690
Ensembl chr11:27,004,320...27,016,941
JBrowse link
DNA methylation on cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IDA
ISO
MGI:MGI:1857157 (MGI:MGI:49689|PMID:1606615) RGD PMID:1606615, PMID:22880885 MGI:MGI:49689, RGD:9588218 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha IDA RGD PMID:22880885 RGD:9588218 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3l DNA methyltransferase 3 like ISO
IEA
ISS
(MGI:MGI:3054275|PMID:15318244)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15318244 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3054275 NCBI chr20:11,344,513...11,359,090
Ensembl chr20:11,344,514...11,359,090
JBrowse link
DNA methylation on cytosine within a CG sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IDA RGD PMID:3856245 RGD:2301219 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO (MGI:MGI:3718157|PMID:17212651) RGD PMID:17212651 MGI:MGI:3718157 NCBI chr20:4,576,033...4,592,980
Ensembl chr20:4,576,057...4,592,980
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:MGI:3611933 (MGI:MGI:3610843|PMID:16287714) RGD PMID:16287714 MGI:MGI:3610843 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
DNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IMP positive regulation of DNA adduct formation RGD PMID:24025706 RGD:7829724 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Dntt DNA nucleotidylexotransferase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:260,289,626...260,321,174
Ensembl chr 1:260,289,589...260,321,320
JBrowse link
G Gstt1 glutathione S-transferase theta 1 IDA RGD PMID:11453994 RGD:7794854 NCBI chr20:13,799,102...13,816,527
Ensembl chr20:13,799,102...13,816,526
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO MGI:MGI:3052754 (MGI:MGI:5566725|PMID:24205360) RGD PMID:24205360 MGI:MGI:5566725 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
DNA protection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase ISO (PMID:24534463) RGD PMID:24534463 NCBI chr20:10,361,987...10,386,663
Ensembl chr20:10,361,988...10,386,751
JBrowse link
G Dctpp1 dCTP pyrophosphatase 1 ISO
IBA
ISS
(PMID:24467396)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24467396, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:198,703,459...198,706,852
Ensembl chr 1:198,703,461...198,706,852
JBrowse link
G Nudt1 nudix hydrolase 1 ISO
ISS
(PMID:10608900)
GO_REF:0000024
RGD
UniProt
PMID:10608900 GO_REF:0000024 NCBI chr12:16,391,578...16,398,771
Ensembl chr12:16,391,578...16,395,029
JBrowse link
G Nudt15 nudix hydrolase 15 NOT ISO (PMID:26878724)
(PMID:26238318)
RGD PMID:26238318, PMID:26878724 NCBI chr15:55,417,774...55,456,698
Ensembl chr15:55,419,502...55,456,698
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07067300.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 9:38,799,881...38,800,143 JBrowse link
G AC134087.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:150,994,665...150,994,913 JBrowse link
G Dmc1 DNA meiotic recombinase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,796,217...120,840,524
Ensembl chr 7:120,796,217...120,839,577
JBrowse link
G Rad51 RAD51 recombinase ISO
IBA
(PMID:26681308)
PMID:21873635
RGD PMID:26681308, PMID:21873635 RGD:13792537 NCBI chr 3:110,918,240...110,942,920
Ensembl chr 3:110,918,243...110,942,917
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:152,429,826...152,451,875
Ensembl chr 4:152,430,187...152,451,609
JBrowse link
G RGD1561465 similar to RIKEN cDNA 2900010J23 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:150,994,650...150,995,029 JBrowse link
G Swi5 SWI5 homologous recombination repair protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:11,307,981...11,317,049
Ensembl chr 3:11,307,981...11,317,049
JBrowse link
DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07009373.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:94,902,666...94,903,226 JBrowse link
G AABR07015743.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr14:73,674,753...73,675,382 JBrowse link
G AABR07019870.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr13:5,480,150...5,480,629 JBrowse link
G AABR07025074.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:27,472,051...27,472,687 JBrowse link
G AABR07029613.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:40,994,237...40,994,872 JBrowse link
G AABR07030543.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:92,769,031...92,771,911 JBrowse link
G AABR07035218.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:7,081,895...7,094,002 JBrowse link
G AABR07040430.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:100,206,243...100,207,974 JBrowse link
G AABR07040480.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:102,031,984...102,039,530 JBrowse link
G AABR07041586.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:134,020,900...134,021,502 JBrowse link
G AABR07054355.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:149,741,312...149,741,953 JBrowse link
G AABR07054358.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:149,790,856...149,791,497 JBrowse link
G AABR07060165.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:60,547,401...60,548,021 JBrowse link
G AABR07060287.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:66,091,641...66,092,259 JBrowse link
G AABR07067274.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 9:37,593,032...37,593,603 JBrowse link
G AC094217.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:31,436,712...31,437,203 JBrowse link
G AC108595.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:132,983,472...132,984,110 JBrowse link
G Actr8 actin related protein 8 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:6,047,977...6,062,586
Ensembl chr16:6,048,004...6,062,550
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:27,849,943...27,852,083
Ensembl chr15:27,849,979...27,852,082
JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:23,146,085...23,166,676
Ensembl chr  X:23,146,085...23,166,675
JBrowse link
G Blm BLM RecQ like helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Brca2 BRCA2, DNA repair associated IDA RGD PMID:12228710 RGD:632363 NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
JBrowse link
G Dclre1c DNA cross-link repair 1C ISO MGI:MGI:2667614 (MGI:MGI:2447929|PMID:12504013) RGD PMID:12504013 MGI:MGI:2447929 NCBI chr17:78,782,512...78,812,140
Ensembl chr17:78,783,437...78,812,111
JBrowse link
G Eid3 EP300 interacting inhibitor of differentiation 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:26,976,154...26,977,479 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO UniProtKB:P07903 (PMID:11707424)
MGI:MGI:2183944 (MGI:MGI:2153690|PMID:11707424)
RGD PMID:11707424 MGI:MGI:2153690 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Exo1 exonuclease 1 ISO
IBA
UniProtKB:P39875 (PMID:10364235)
PMID:21873635
RGD PMID:10364235, PMID:21873635 RGD:13792537 NCBI chr13:93,936,989...93,962,749
Ensembl chr13:93,939,022...93,960,342
JBrowse link
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:59,984,234...59,985,494
Ensembl chr19:59,984,234...59,985,494
JBrowse link
G Hmgb1 high mobility group box 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb1-ps3 high mobility group box 1, pseudogene 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:132,982,959...132,984,167 JBrowse link
G Hmgb2 high mobility group box 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:49,708,038...49,709,128
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Hmgb3 high mobility group box 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:36,690,190...36,694,329
Ensembl chr17:36,690,249...36,694,325
Ensembl chr14:36,690,249...36,694,325
JBrowse link
G Hmgb4 high-mobility group box 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:146,445,545...146,446,227
Ensembl chr 5:146,445,545...146,446,227
JBrowse link
G Iho1 interactor of HORMAD1 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,182,484...117,215,390
Ensembl chr 8:117,183,343...117,211,170
JBrowse link
G Ino80c INO80 complex subunit C IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:15,995,005...16,009,639
Ensembl chr18:15,995,000...16,009,710
JBrowse link
G Ino80e INO80 complex subunit E IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:198,287,489...198,298,076
Ensembl chr 1:198,287,490...198,298,076
JBrowse link
G Lig1 DNA ligase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:75,356,212...75,394,757
Ensembl chr 1:75,356,220...75,394,758
JBrowse link
G LOC100911637 high mobility group protein B1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:149,741,055...149,741,953 JBrowse link
G LOC100911727 DNA ligase 1-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:75,224,143...75,264,441
Ensembl chr 1:75,233,703...75,264,293
JBrowse link
G LOC102548927 high mobility group protein B4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:53,234,043...53,235,377
Ensembl chr  X:53,233,469...53,235,286
JBrowse link
G LOC103694516 high mobility group protein B4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:134,389,281...134,389,978
Ensembl chr  X:134,389,417...134,389,911
JBrowse link
G LOC103694517 high mobility group protein B4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:139,329,414...139,330,120
Ensembl chr  X:139,329,481...139,329,975
JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:115,351,012...115,351,755
Ensembl chr  X:115,351,114...115,351,755
JBrowse link
G LOC108349258 high mobility group protein B4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:142,344,626...142,345,439
Ensembl chr  X:142,344,878...142,345,372
JBrowse link
G LOC108350839 high mobility group protein B1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:92,431,517...92,432,354
Ensembl chr 4:92,431,710...92,432,354
JBrowse link
G LOC681067 similar to RIKEN cDNA 1700001F22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:132,424,185...132,424,955
Ensembl chr  X:132,424,240...132,424,746
JBrowse link
G LOC688583 similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:51,458,436...51,462,755
Ensembl chr17:36,690,249...36,694,325
Ensembl chr14:36,690,249...36,694,325
JBrowse link
G LOC690521 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:149,790,599...149,791,497 JBrowse link
G LOC691030 similar to RIKEN cDNA 1700001F22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:130,794,079...130,794,824
Ensembl chr  X:130,794,167...130,794,673
JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:89,369,417...89,556,942
Ensembl chr 8:89,369,417...89,556,942
JBrowse link
G Msh2 mutS homolog 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
JBrowse link
G Nono non-POU domain containing, octamer-binding IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:71,324,365...71,342,225
Ensembl chr  X:71,324,365...71,342,225
JBrowse link
G Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:201,103,750...201,110,838
Ensembl chr 1:201,096,059...201,110,928
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:198,448,790...198,451,078
Ensembl chr 1:198,449,040...198,450,688
JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:71,124,477...71,133,460
Ensembl chr 8:71,125,414...71,132,629
JBrowse link
G Rad50 RAD50 double strand break repair protein ISO
ISS
(PMID:9705271)
GO_REF:0000024
RGD
UniProt
PMID:9705271 GO_REF:0000024 NCBI chr10:39,002,130...39,054,042
Ensembl chr10:39,001,498...39,054,142
JBrowse link
G Rad51ap1 RAD51 associated protein 1 ISO PR:Q08297 (MGI:MGI:893977|PMID:9192668) RGD PMID:9192668 MGI:MGI:893977 NCBI chr 4:159,469,803...159,482,869
Ensembl chr 4:159,469,804...159,482,869
JBrowse link
G Rad51c RAD51 paralog C ISO (PMID:19451272) RGD PMID:19451272 NCBI chr10:74,697,713...74,724,004
Ensembl chr10:74,697,716...74,724,472
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein ISO (PMID:12370410), (PMID:8702565) RGD PMID:8702565, PMID:12370410 NCBI chr 4:152,429,826...152,451,875
Ensembl chr 4:152,430,187...152,451,609
JBrowse link
G Recql RecQ like helicase IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:176,581,892...176,606,520
Ensembl chr 4:176,581,897...176,606,382
JBrowse link
G Recql4 RecQ like helicase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,765,892...117,773,128
Ensembl chr 7:117,763,783...117,773,134
JBrowse link
G Recql5 RecQ like helicase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:104,443,735...104,482,889
Ensembl chr10:104,443,736...104,482,838
JBrowse link
G RGD1559962 similar to High mobility group protein 2 (HMG-2) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:20,416,735...20,417,959
Ensembl chr 1:20,417,008...20,417,637
JBrowse link
G RGD1560585 similar to RIKEN cDNA 1700001F22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:144,001,166...144,001,891
Ensembl chr  X:144,001,233...144,001,727
JBrowse link
G RGD1561558 similar to RIKEN cDNA 1700001F22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,261,123...158,261,953
Ensembl chr  X:158,261,223...158,261,717
JBrowse link
G RGD1561694 similar to High mobility group protein 2 (HMG-2) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:73,674,647...73,675,638 JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:40,994,237...40,994,990 JBrowse link
G RGD1564855 similar to RuvB-like protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:1,854,580...1,856,333
Ensembl chr  X:1,854,751...1,856,258
JBrowse link
G RGD1565762 similar to High mobility group protein 1 (HMG-1) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:5,480,069...5,480,782 JBrowse link
G RGD1566225 similar to RIKEN cDNA 1700001F22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:137,197,195...137,197,990
Ensembl chr  X:137,197,396...137,197,902
JBrowse link
G Rpain RPA interacting protein ISO UniProtKB:P27694 (PMID:16135809) RGD PMID:16135809 NCBI chr10:57,606,287...57,613,834
Ensembl chr10:57,606,650...57,613,747
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:176,818,012...176,856,531
Ensembl chr 3:176,818,437...176,856,531
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Supv3l1 Suv3 like RNA helicase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17961633)
Ensembl
UniProt
RGD
PMID:17961633 GO_REF:0000024, GO_REF:0000107 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
G Tfpt TCF3 fusion partner IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:64,162,525...64,172,307
Ensembl chr 1:64,162,672...64,172,470
JBrowse link
G Wrn WRN RecQ like helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:79,659,275...79,748,050
Ensembl chr 9:79,659,251...79,748,078
JBrowse link
DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030926.1 IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr10:109,891,383...109,891,879 JBrowse link
G AABR07052430.1 IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 3:52,997,922...52,998,650 JBrowse link
G Adprs ADP-ribosylserine hydrolase ISO (PMID:30045870) RGD PMID:30045870 NCBI chr 5:144,336,312...144,341,586
Ensembl chr 5:144,336,312...144,341,586
JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530), (PMID:19959401) RGD PMID:18603530, PMID:19959401 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase ISO
ISS
(PMID:16858410)
GO_REF:0000024
RGD
UniProt
PMID:16858410 GO_REF:0000024 NCBI chr 3:82,874,242...82,907,467
Ensembl chr 3:82,874,248...82,906,581
JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT ISO (MGI:MGI:5800654|PMID:27010503) RGD PMID:27010503 MGI:MGI:5800654 NCBI chr16:19,799,943...19,826,057
Ensembl chr16:19,800,463...19,803,796
JBrowse link
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:22,665,128...22,676,079
Ensembl chr12:22,665,112...22,676,075
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO
ISS
(PMID:9560228)
GO_REF:0000024
RGD
UniProt
PMID:9560228 GO_REF:0000024 NCBI chr15:27,849,943...27,852,083
Ensembl chr15:27,849,979...27,852,082
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:11897662) RGD PMID:11897662 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Atm ATM serine/threonine kinase ISO MGI:MGI:1857132|MGI:MGI:2155399 (MGI:MGI:2156121|PMID:11679583), (MGI:MGI:3053255|PMID:15364958), (MGI:MGI:3511081|PMID:15542845) RGD PMID:11679583, PMID:15364958, PMID:15542845 MGI:MGI:2156121, MGI:MGI:3053255, MGI:MGI:3511081 NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045
JBrowse link
G Atr ATR serine/threonine kinase ISO (MGI:MGI:3053255|PMID:15364958) RGD PMID:15364958 MGI:MGI:3053255 NCBI chr 8:103,673,578...103,770,886
Ensembl chr 8:103,673,411...103,770,947
JBrowse link
G Atrip ATR interacting protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,797,954...117,811,989
Ensembl chr 8:117,797,842...117,811,975
JBrowse link
G Atrx ATRX, chromatin remodeler IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Bach1 BTB domain and CNC homolog 1 ISO (PMID:11301010) RGD PMID:11301010 NCBI chr11:27,364,913...27,398,713
Ensembl chr11:27,364,916...27,398,842
JBrowse link
G Bard1 BRCA1 associated RING domain 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:78,297,723...78,368,777
Ensembl chr 9:78,294,834...78,369,031
JBrowse link
G Blm BLM RecQ like helicase ISO
IBA
(MGI:MGI:3053255|PMID:15364958)
PMID:21873635
RGD PMID:15364958, PMID:21873635 MGI:MGI:3053255, RGD:13792537 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex, subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:9,863,380...9,865,920
Ensembl chr 9:9,863,404...9,865,920
JBrowse link
G Cdc5l cell division cycle 5-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:17,949,764...17,988,514
Ensembl chr 9:17,949,764...17,988,509
JBrowse link
G Cdk2 cyclin dependent kinase 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:3,124,953...3,132,533
Ensembl chr 7:3,124,954...3,132,457
JBrowse link
G Cdk7 cyclin-dependent kinase 7 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:30,710,642...30,735,522
Ensembl chr 2:30,710,643...30,735,514
JBrowse link
G Cdk9 cyclin-dependent kinase 9 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:11,742,269...11,747,117
Ensembl chr 3:11,742,266...11,747,113
JBrowse link
G Cenps centromere protein S ISO (PMID:20347429) RGD PMID:20347429 NCBI chr 5:165,946,106...165,955,723 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:199,714,044...199,792,270
Ensembl chr 2:199,716,713...199,771,896
JBrowse link
G Chek1 checkpoint kinase 1 ISO (MGI:MGI:3053255|PMID:15364958)
(PMID:19716789)
RGD PMID:15364958, PMID:19716789 MGI:MGI:3053255 NCBI chr 8:39,181,162...39,201,588
Ensembl chr 8:39,181,163...39,243,882
JBrowse link
G Chrna4 cholinergic receptor nicotinic alpha 4 subunit IEA
ISO
GO_REF:0000107
(PMID:16332175)
Ensembl
RGD
PMID:16332175 GO_REF:0000107 NCBI chr 3:176,533,182...176,547,965
Ensembl chr 3:176,527,516...176,548,208
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 TAS RGD PMID:12145536 RGD:632554 NCBI chr 1:226,657,561...226,683,356
Ensembl chr 1:226,657,561...226,683,347
JBrowse link
G Ddb2 damage specific DNA binding protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:80,030,437...80,052,984
Ensembl chr 3:80,030,437...80,052,953
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:136,533,791...136,541,795
Ensembl chr 5:136,533,792...136,541,795
JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,786,105...11,824,742
Ensembl chr 7:11,786,105...11,824,742
JBrowse link
G Eepd1 endonuclease/exonuclease/phosphatase family domain containing 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:26,651,241...26,758,330
Ensembl chr 8:26,652,121...26,758,325
JBrowse link
G Eid3 EP300 interacting inhibitor of differentiation 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:26,976,154...26,977,479 JBrowse link
G Endov endonuclease V ISO (MGI:MGI:5009179|PMID:12853604) RGD PMID:12853604 MGI:MGI:5009179 NCBI chr10:108,630,723...108,646,679
Ensembl chr10:108,630,823...108,646,677
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO MGI:MGI:2158940 (MGI:MGI:2446381|PMID:12466203)
(PMID:25538220)
RGD PMID:12466203, PMID:25538220 MGI:MGI:2446381 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO MGI:MGI:2183949 (MGI:MGI:2179786|PMID:11950998) RGD PMID:11950998 MGI:MGI:2179786 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:2167179) RGD PMID:2167179 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO MGI:MGI:3028660 (MGI:MGI:3027419|PMID:14729965)
UniProtKB:Q15554 (PMID:17055345), (PMID:19596235)
RGD PMID:14729965, PMID:17055345, PMID:19596235 MGI:MGI:3027419 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO MGI:MGI:3043589 (MGI:MGI:3041918|PMID:15082767) RGD PMID:15082767 MGI:MGI:3041918 NCBI chr 9:50,928,847...50,970,962
Ensembl chr 9:50,925,619...50,970,955
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO MGI:MGI:1097693|MGI:MGI:1932102 (MGI:MGI:1861042|PMID:10806208), (MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
(PMID:26218421)
RGD PMID:10806208, PMID:12447686, PMID:17213818, PMID:26218421 MGI:MGI:1861042, MGI:MGI:3715683, MGI:MGI:3759387 NCBI chr16:8,734,028...8,804,610
Ensembl chr16:8,734,035...8,804,610
JBrowse link
G Eya2 EYA transcriptional coactivator and phosphatase 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:162,285,275...162,470,642
Ensembl chr 3:162,346,490...162,470,065
JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:23,237,617...23,611,580
Ensembl chr 1:23,409,408...23,610,164
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603073) RGD PMID:20603073 NCBI chr 1:125,182,117...125,209,772
Ensembl chr 1:125,181,838...125,209,727
JBrowse link
G Fancd2 FA complementation group D2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:145,489,869...145,551,479
Ensembl chr 4:145,489,869...145,551,479
JBrowse link
G Fanci FA complementation group I IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:141,116,565...141,172,997
Ensembl chr 1:141,120,166...141,172,483
JBrowse link
G Fancl FA complementation group L ISO
IBA
(PMID:16916645)
PMID:21873635
RGD PMID:16916645, PMID:21873635 RGD:13792537 NCBI chr14:110,675,306...110,740,880
Ensembl chr14:110,676,090...110,740,317
JBrowse link
G Fbh1 F-box DNA helicase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:70,399,093...70,437,151
Ensembl chr17:70,399,049...70,437,144
JBrowse link
G Fbxo6 F-box protein 6 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:164,956,285...164,962,075
Ensembl chr 5:164,956,280...164,959,851
JBrowse link
G Fen1 flap structure-specific endonuclease 1 ISO MGI:MGI:2670036 (MGI:MGI:2668283|PMID:12861020) RGD PMID:12861020 MGI:MGI:2668283 NCBI chr 1:226,251,516...226,256,160
Ensembl chr 1:226,251,518...226,255,886
JBrowse link
G Fh fumarate hydratase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:93,651,486...93,677,371
Ensembl chr13:93,651,484...93,677,377
JBrowse link
G Foxm1 forkhead box M1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:161,685,236...161,697,633
Ensembl chr 4:161,685,258...161,696,305
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,849,618...102,877,939
Ensembl chr 1:102,849,889...102,877,944
JBrowse link
G H2ax H2A.X variant histone ISO MGI:MGI:2156048 (MGI:MGI:2179182|PMID:11934988), (MGI:MGI:3053255|PMID:15364958) RGD PMID:11934988, PMID:15364958 MGI:MGI:2179182, MGI:MGI:3053255 NCBI chr 8:48,665,652...48,666,981
Ensembl chr 8:48,665,652...48,666,981
JBrowse link
G Hdac10 histone deacetylase 10 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:130,102,335...130,109,036
Ensembl chr 7:130,102,347...130,107,437
JBrowse link
G Hdac9 histone deacetylase 9 ISO MGI:MGI:1890508 (MGI:MGI:5139938|PMID:21746928) RGD PMID:21746928 MGI:MGI:5139938 NCBI chr 6:53,487,367...54,358,694
Ensembl chr 6:53,488,883...54,059,119
JBrowse link
G Hinfp histone H4 transcription factor ISO (PMID:17974976) RGD PMID:17974976 NCBI chr 8:48,626,398...48,638,012
Ensembl chr 8:48,628,340...48,634,797
JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A ISO MGI:MGI:3028843 (MGI:MGI:3027215|PMID:14701760) RGD PMID:14701760 MGI:MGI:3027215 NCBI chr20:4,875,834...4,881,751
Ensembl chr20:4,877,324...4,879,779
JBrowse link
G Inip INTS3 and NABP interacting protein ISO
IBA
(PMID:19605351)
PMID:21873635
RGD PMID:19605351, PMID:21873635 RGD:13792537 NCBI chr 5:77,016,871...77,031,106
Ensembl chr 5:77,019,431...77,031,120
JBrowse link
G Ino80 INO80 complex ATPase subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:111,186,371...111,266,542
Ensembl chr 3:111,187,711...111,266,542
JBrowse link
G Ino80c INO80 complex subunit C IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:15,995,005...16,009,639
Ensembl chr18:15,995,000...16,009,710
JBrowse link
G Ino80e INO80 complex subunit E IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:198,287,489...198,298,076
Ensembl chr 1:198,287,490...198,298,076
JBrowse link
G Ints3 integrator complex subunit 3 ISO (PMID:19605351), (PMID:19683501) RGD PMID:19605351, PMID:19683501 NCBI chr 2:189,766,927...189,818,327
Ensembl chr 2:189,766,735...189,818,224
JBrowse link
G Kat7 lysine acetyltransferase 7 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:83,095,067...83,128,342
Ensembl chr10:83,095,068...83,128,297
JBrowse link
G Kif1b kinesin family member 1B IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:165,994,803...166,133,497
Ensembl chr 5:165,938,576...166,133,491
JBrowse link
G Kif22 kinesin family member 22 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:198,461,406...198,476,430
Ensembl chr 1:198,461,169...198,476,476
JBrowse link
G Kmt5b lysine methyltransferase 5B ISO
ISS
(PMID:28114273)
GO_REF:0000024
RGD
UniProt
PMID:28114273 GO_REF:0000024 NCBI chr 1:219,000,844...219,050,211
Ensembl chr 1:219,000,844...219,050,211
JBrowse link
G Kmt5c lysine methyltransferase 5C ISO
ISS
(PMID:28114273)
GO_REF:0000024
RGD
UniProt
PMID:28114273 GO_REF:0000024 NCBI chr 1:72,666,662...72,674,271
Ensembl chr 1:72,666,665...72,674,271
JBrowse link
G Lig1 DNA ligase 1 NOT IDA
ISO
(MGI:MGI:4943978|PMID:21390131)
MGI:MGI:2179196 (MGI:MGI:2178155|PMID:11896201)
RGD PMID:11896201, PMID:21390131, PMID:1730240 MGI:MGI:2178155, MGI:MGI:4943978, RGD:724410 NCBI chr 1:75,356,212...75,394,757
Ensembl chr 1:75,356,220...75,394,758
JBrowse link
G Lig4 DNA ligase 4 ISO MGI:MGI:1857732 (MGI:MGI:3037169|PMID:11779495), (MGI:MGI:4943978|PMID:21390131) RGD PMID:11779495, PMID:21390131 MGI:MGI:3037169, MGI:MGI:4943978 NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
JBrowse link
G LOC100911807 ATR-interacting protein-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:118,428,032...118,437,999
Ensembl chr 8:118,428,289...118,436,894
JBrowse link
G LOC103694506 ubiquitin-conjugating enzyme E2 W IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:119,160,964...119,178,031
Ensembl chr  X:119,160,959...119,162,518
JBrowse link
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:147,744,673...147,756,462
Ensembl chr 4:147,746,186...147,756,294
JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:3,405,017...3,419,831
Ensembl chr20:3,404,711...3,419,831
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO
IBA
(MGI:MGI:2677087|PMID:13679151)
PMID:21873635
RGD PMID:13679151, PMID:21873635 MGI:MGI:2677087, RGD:13792537 NCBI chr 1:209,237,255...209,464,189
Ensembl chr 1:209,237,233...209,464,190
JBrowse link
G Mlh1 mutL homolog 1 ISO MGI:MGI:1858054|MGI:MGI:1930998 (MGI:MGI:2677087|PMID:13679151), (MGI:MGI:3513725|PMID:15480418) RGD PMID:13679151, PMID:15480418 MGI:MGI:2677087, MGI:MGI:3513725 NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component ISO (PMID:22678362) RGD PMID:22678362 NCBI chr 1:261,191,646...261,229,070
Ensembl chr 1:261,191,646...261,229,046
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:95,995,341...96,153,331
Ensembl chr 6:96,007,805...96,153,330
JBrowse link
G Morf4l2 mortality factor 4 like 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:107,394,468...107,405,564
Ensembl chr  X:107,394,486...107,405,564
JBrowse link
G Msh2 mutS homolog 2 ISO (PMID:8942985)
(MGI:MGI:2667543|PMID:12687013)
RGD PMID:8942985, PMID:12687013 MGI:MGI:2667543 NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
JBrowse link
G Msh3 mutS homolog 3 ISO (PMID:8942985) RGD PMID:8942985 NCBI chr 2:21,790,048...21,931,791
Ensembl chr 2:21,790,044...21,931,720
JBrowse link
G Msh6 mutS homolog 6 ISO (PMID:8942985) RGD PMID:8942985 NCBI chr 6:11,644,565...11,662,389
Ensembl chr 6:11,644,578...11,662,499
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit ISO (PMID:19596235) RGD PMID:19596235 NCBI chr 1:220,862,474...220,867,973
Ensembl chr 1:220,862,386...220,867,815
JBrowse link
G Mutyh mutY DNA glycosylase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:135,663,328...135,675,348
Ensembl chr 5:135,663,371...135,675,344
JBrowse link
G Nabp1 nucleic acid binding protein 1 ISO
ISS
(PMID:19683501)
GO_REF:0000024
RGD
UniProt
PMID:19683501 GO_REF:0000024 NCBI chr 9:55,049,893...55,057,784
Ensembl chr 9:55,050,203...55,057,658
JBrowse link
G Nabp2 nucleic acid binding protein 2 ISO
ISS
(MGI:MGI:5629774|PMID:25589350)
(PMID:18449195), (PMID:19683501)
GO_REF:0000024
RGD
UniProt
PMID:18449195, PMID:19683501, PMID:25589350 GO_REF:0000024, MGI:MGI:5629774 NCBI chr 7:2,820,006...2,825,627
Ensembl chr 7:2,820,007...2,825,608
JBrowse link
G Neil1 nei-like DNA glycosylase 1 ISO (MGI:MGI:2389521|PMID:12200441) RGD PMID:12200441 MGI:MGI:2389521 NCBI chr 8:61,817,258...61,824,023
Ensembl chr 8:61,817,258...61,823,102
JBrowse link
G Nono non-POU domain containing, octamer-binding IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:71,324,365...71,342,225
Ensembl chr  X:71,324,365...71,342,225
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor ISO (PMID:21741933) RGD PMID:21741933 NCBI chr 1:77,836,522...77,843,991
Ensembl chr 1:77,836,196...77,844,189
JBrowse link
G Npm1 nucleophosmin 1 ISO
ISS
(PMID:19188445)
GO_REF:0000024
RGD
UniProt
PMID:19188445 GO_REF:0000024 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:196,857,490...196,883,907
Ensembl chr 1:196,857,461...196,884,302
JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component ISO (PMID:27427983) RGD PMID:27427983 NCBI chr 1:125,663,987...125,665,314 JBrowse link
G Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,103,750...201,110,838
Ensembl chr 1:201,096,059...201,110,928
JBrowse link
G Nudt1 nudix hydrolase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:16,391,578...16,398,771
Ensembl chr12:16,391,578...16,395,029
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase ISO MGI:MGI:1100494|MGI:MGI:2386212|MGI:MGI:2386943 (MGI:MGI:2150199|PMID:11532868), (MGI:MGI:2668786|PMID:12874039), (MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686) RGD PMID:11532868, PMID:12447686, PMID:12874039, PMID:17213818 MGI:MGI:2150199, MGI:MGI:2668786, MGI:MGI:3715683, MGI:MGI:3759387 NCBI chr 4:145,282,828...145,289,367
Ensembl chr 4:145,282,797...145,289,326
JBrowse link
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:222,451,674...222,459,952
Ensembl chr 1:222,451,674...222,459,952
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:198,448,790...198,451,078
Ensembl chr 1:198,449,040...198,450,688
JBrowse link
G Park7 Parkinsonism associated deglycase ISO
IEA
ISS
(PMID:28596309)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28596309 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:167,982,438...168,004,724
Ensembl chr 5:167,982,439...168,004,724
JBrowse link
G Parpbp PARP1 binding protein IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:28,654,707...28,724,412
Ensembl chr 7:28,654,707...28,715,224
JBrowse link
G Pds5a PDS5 cohesin associated factor A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:44,185,445...44,282,308
Ensembl chr14:44,185,446...44,280,079
JBrowse link
G Pds5b PDS5 cohesin associated factor B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:659,995...794,042
Ensembl chr12:660,011...794,042
JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:71,124,477...71,133,460
Ensembl chr 8:71,125,414...71,132,629
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO MGI:MGI:1857947 (MGI:MGI:3513725|PMID:15480418) RGD PMID:15480418 MGI:MGI:3513725 NCBI chr12:12,714,394...12,738,654
Ensembl chr12:12,714,394...12,738,641
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase ISO
IBA
UniProtKB:J7Q8E6|UniProtKB:J7QRV0 (PMID:10446192)
PMID:21873635
RGD PMID:10446192, PMID:21873635 RGD:13792537 NCBI chr 1:100,853,475...100,859,202
Ensembl chr 1:100,853,902...100,859,084
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISO
ISS
(PMID:3335506)
(PMID:11470886)
GO_REF:0000024
RGD
UniProt
PMID:3335506, PMID:11470886 GO_REF:0000024 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:86,111,416...86,117,578
Ensembl chr14:86,111,294...86,117,578
JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:94,968,836...94,979,259
Ensembl chr10:94,968,836...94,979,259
JBrowse link
G Polk DNA polymerase kappa ISO MGI:MGI:2445458 (MGI:MGI:2445277|PMID:12555660)
(PMID:28297716)
RGD PMID:12555660, PMID:28297716 MGI:MGI:2445277 NCBI chr 2:27,305,718...27,364,906
Ensembl chr 2:27,305,728...27,364,906
JBrowse link
G Polq DNA polymerase theta ISO MGI:MGI:107202|MGI:MGI:2656007 (MGI:MGI:2654407|PMID:12663541), (MGI:MGI:3511081|PMID:15542845) RGD PMID:12663541, PMID:15542845 MGI:MGI:2654407, MGI:MGI:3511081 NCBI chr11:66,585,860...66,695,369
Ensembl chr11:66,585,881...66,695,353
JBrowse link
G Psme4 proteasome activator subunit 4 ISO (MGI:MGI:5494329|PMID:23706739) RGD PMID:23706739 MGI:MGI:5494329 NCBI chr14:115,166,165...115,269,041
Ensembl chr14:115,166,416...115,269,056
JBrowse link
G Pttg1 PTTG1 regulator of sister chromatid separation, securin IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:29,014,332...29,026,088
Ensembl chr10:29,020,049...29,026,002
JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor ISO
IBA
ISS
(PMID:20347427)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20347427, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:12,331,288...12,348,263
Ensembl chr 7:12,331,416...12,346,475
JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:60,461,513...60,469,646
Ensembl chr 2:60,461,551...60,469,685
JBrowse link
G Rad17 RAD17 checkpoint clamp loader component IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:30,634,353...30,664,618
Ensembl chr 2:30,634,354...30,664,163
JBrowse link
G Rad50 RAD50 double strand break repair protein ISO
IEA
ISS
(PMID:9705271)
GO_REF:0000002
GO_REF:0000024
RGD
InterPro
UniProt
PMID:9705271 GO_REF:0000002, GO_REF:0000024 NCBI chr10:39,002,130...39,054,042
Ensembl chr10:39,001,498...39,054,142
JBrowse link
G Rad51c RAD51 paralog C ISO
IBA
(PMID:19451272)
PMID:21873635
RGD PMID:19451272, PMID:21873635 RGD:13792537 NCBI chr10:74,697,713...74,724,004
Ensembl chr10:74,697,716...74,724,472
JBrowse link
G Rad9a RAD9 checkpoint clamp component A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:219,443,347...219,450,574
Ensembl chr 1:219,444,092...219,450,451
JBrowse link
G Rad9b RAD9 checkpoint clamp component B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:39,699,076...39,731,218
Ensembl chr12:39,699,181...39,729,516
JBrowse link
G Rbm17 RNA binding motif protein 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:70,586,345...70,603,289
Ensembl chr17:70,586,394...70,603,267
JBrowse link
G Recql RecQ like helicase IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:176,581,892...176,606,520
Ensembl chr 4:176,581,897...176,606,382
JBrowse link
G Recql4 RecQ like helicase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,765,892...117,773,128
Ensembl chr 7:117,763,783...117,773,134
JBrowse link
G Recql5 RecQ like helicase 5 ISO
IBA
ISS
(PMID:22973052)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22973052, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:104,443,735...104,482,889
Ensembl chr10:104,443,736...104,482,838
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit ISO MGI:MGI:2183197 (MGI:MGI:2176643|PMID:11884603) RGD PMID:11884603 MGI:MGI:2176643 NCBI chr20:44,803,664...44,961,362
Ensembl chr20:44,803,666...44,961,382
JBrowse link
G Rfc1 replication factor C subunit 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:44,627,528...44,702,205
Ensembl chr14:44,580,216...44,702,203
JBrowse link
G Rfc2 replication factor C subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:25,130,375...25,143,480
Ensembl chr12:25,130,377...25,143,480
JBrowse link
G Rfc3 replication factor C subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:1,460,581...1,471,344
Ensembl chr12:1,460,538...1,471,357
JBrowse link
G Rfc4 replication factor C subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:81,358,592...81,373,044
Ensembl chr11:81,358,592...81,373,043
JBrowse link
G Rfc5 replication factor C subunit 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:44,931,494...44,941,051
Ensembl chr12:44,931,494...44,941,324
JBrowse link
G RGD1560831 similar to 40S ribosomal protein S3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:52,997,847...52,998,669 JBrowse link
G RGD1564855 similar to RuvB-like protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:1,854,580...1,856,333
Ensembl chr  X:1,854,751...1,856,258
JBrowse link
G Rmi2 RecQ mediated genome instability 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:4,904,458...4,910,339
Ensembl chr10:4,905,210...4,910,305
JBrowse link
G Rpa1 replication protein A1 ISO
IBA
(PMID:18469000)
PMID:21873635
RGD PMID:18469000, PMID:21873635 RGD:13792537 NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
JBrowse link
G Rpa2 replication protein A2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:150,957,041...150,967,597
Ensembl chr 5:150,957,001...150,968,269
JBrowse link
G Rpain RPA interacting protein ISO UniProtKB:P27694 (PMID:16135809) RGD PMID:16135809 NCBI chr10:57,606,287...57,613,834
Ensembl chr10:57,606,650...57,613,747
JBrowse link
G Rps3 ribosomal protein S3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:164,435,868...164,441,167
Ensembl chr 1:164,435,878...164,441,167
JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B ISO MGI:MGI:2672883 (MGI:MGI:2670318|PMID:12858174) RGD PMID:12858174 MGI:MGI:2670318 NCBI chr 7:76,750,045...76,780,817
Ensembl chr 7:76,750,050...76,780,817
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:176,818,012...176,856,531
Ensembl chr 3:176,818,437...176,856,531
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Sirt7 sirtuin 7 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:109,796,046...109,802,821
Ensembl chr10:109,796,020...109,802,739
JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit ISO (PMID:19595721), (PMID:19595722), (PMID:19596235), (PMID:19596236) RGD PMID:19595721, PMID:19595722, PMID:19596235, PMID:19596236 NCBI chr 1:198,114,514...198,120,061
Ensembl chr 1:198,112,245...198,120,061
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit ISO (PMID:19595722) RGD PMID:19595722 NCBI chr10:11,787,756...11,808,326
Ensembl chr10:11,786,121...11,807,928
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:79,943,775...79,990,230
Ensembl chr 9:79,944,132...79,990,229
JBrowse link
G Smc1a structural maintenance of chromosomes 1A IEA GO_REF:0000002
GO_REF:0000043
InterPro
UniProt
GO_REF:0000002, GO_REF:0000043 NCBI chr  X:21,710,976...21,755,708
Ensembl chr  X:21,711,019...21,755,525
JBrowse link
G Smc3 structural maintenance of chromosomes 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:274,310,120...274,352,856
Ensembl chr 1:274,309,758...274,352,854
JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 IDA RGD PMID:12718542 RGD:2317001 NCBI chr 7:144,774,155...144,788,333
Ensembl chr 7:144,774,160...144,778,656
JBrowse link
G Sprtn SprT-like N-terminal domain IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:57,649,901...57,657,158
Ensembl chr19:57,650,163...57,654,864
JBrowse link
G Ssrp1 structure specific recognition protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:72,447,516...72,457,621
Ensembl chr 3:72,447,537...72,457,649
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr15:28,574,841...28,611,959
Ensembl chr15:28,575,480...28,611,946
JBrowse link
G Taok1 TAO kinase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:62,542,870...62,630,341
Ensembl chr10:62,566,732...62,630,155
JBrowse link
G Taok3 TAO kinase 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:45,037,951...45,116,593
Ensembl chr12:45,037,883...45,182,974
JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 ISO (MGI:MGI:4943978|PMID:21390131)
(PMID:17948061)
RGD PMID:17948061, PMID:21390131 MGI:MGI:4943978 NCBI chr 6:123,895,860...123,963,688
Ensembl chr 6:123,897,956...123,963,675
JBrowse link
G Tfpt TCF3 fusion partner IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:64,162,525...64,172,307
Ensembl chr 1:64,162,672...64,172,470
JBrowse link
G Timeless timeless circadian regulator IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:2,643,288...2,667,329
Ensembl chr 7:2,643,288...2,667,628
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO (MGI:MGI:3053255|PMID:15364958) RGD PMID:15364958 MGI:MGI:3053255 NCBI chr 3:113,160,030...113,259,701
Ensembl chr 3:113,160,000...113,231,790
JBrowse link
G Trex2 three prime repair exonuclease 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:157,374,305...157,375,913
Ensembl chr  X:157,374,305...157,375,913
JBrowse link
G Trim28 tripartite motif-containing 28 ISO (PMID:17178852) RGD PMID:17178852 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:92,305,059...92,435,388
Ensembl chr 9:92,305,051...92,435,365
JBrowse link
G Ttc5 tetratricopeptide repeat domain 5 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:27,698,375...27,715,970
Ensembl chr15:27,698,362...27,716,008
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A ISO
IBA
UniProtKB:P06104 (PMID:1717990)
PMID:21873635
RGD PMID:1717990, PMID:21873635 RGD:13792537 NCBI chr  X:123,486,988...123,497,726
Ensembl chr  X:123,486,989...123,497,726
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B ISO
IBA
UniProtKB:P06104 (PMID:1717990)
PMID:21873635
RGD PMID:1717990, PMID:21873635 RGD:13792537 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
G Ube2d3 ubiquitin-conjugating enzyme E2D 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:240,626,198...240,655,874
Ensembl chr 2:240,627,436...240,655,246
JBrowse link
G Ube2t ubiquitin-conjugating enzyme E2T ISO (PMID:16916645) RGD PMID:16916645 NCBI chr13:51,790,877...51,801,379
Ensembl chr13:51,795,867...51,801,163
JBrowse link
G Ube2u ubiquitin conjugating enzyme E2 U IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:118,574,647...118,642,810
Ensembl chr 5:118,574,801...118,642,863
JBrowse link
G Ube2w ubiquitin-conjugating enzyme E2W IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:29,798,845...29,812,777 JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:76,789,110...76,835,517
NCBI chr 7:76,839,661...76,907,441
Ensembl chr 7:76,789,531...76,853,840
JBrowse link
G Ufl1 Ufm1-specific ligase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:39,616,479...39,650,894
Ensembl chr 5:39,615,956...39,650,895
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:10,738,211...10,758,403
Ensembl chr 9:10,738,222...10,757,954
JBrowse link
G Ung uracil-DNA glycosylase TAS RGD PMID:12167490 RGD:634481 NCBI chr12:48,246,593...48,255,547
Ensembl chr12:48,246,569...48,254,822
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase ISO (PMID:16488880) RGD PMID:16488880 NCBI chr16:20,824,888...20,845,632
Ensembl chr16:20,824,864...20,845,243
JBrowse link
G Usp1 ubiquitin specific peptidase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:117,583,502...117,594,872
Ensembl chr 5:117,583,502...117,594,870
JBrowse link
G Usp10 ubiquitin specific peptidase 10 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:52,566,274...52,608,820
Ensembl chr19:52,566,607...52,608,817
JBrowse link
G Usp28 ubiquitin specific peptidase 28 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:53,295,188...53,355,572
Ensembl chr 8:53,295,222...53,355,572
JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO (PMID:17980597) RGD PMID:17980597 NCBI chr 8:72,207,970...72,284,871
Ensembl chr 8:72,207,972...72,284,873
JBrowse link
G Usp45 ubiquitin specific peptidase 45 ISO (PMID:25538220) RGD PMID:25538220 NCBI chr 5:35,916,763...35,984,525
Ensembl chr 5:35,916,804...35,984,524
JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:22542840)
(MGI:MGI:5644018|PMID:22542840)
RGD PMID:22542840 MGI:MGI:5644018 NCBI chr 1:163,844,804...164,101,568
Ensembl chr 1:163,844,818...164,101,578
JBrowse link
G Vcp valosin-containing protein ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:24,021,674...24,056,073
Ensembl chr15:24,021,674...24,056,073
JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:56,169,024...56,185,800
Ensembl chr10:56,169,025...56,185,857
JBrowse link
G Wrn WRN RecQ like helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (PMID:1601884)
MGI:MGI:1857939 (MGI:MGI:1270007|PMID:9661901), (MGI:MGI:2179786|PMID:11950998)
RGD PMID:1601884, PMID:9661901, PMID:11950998 MGI:MGI:1270007, MGI:MGI:2179786 NCBI chr 5:61,749,767...61,793,641
Ensembl chr 5:61,749,767...61,792,928
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO MGI:MGI:1859840 (MGI:MGI:2445277|PMID:12555660) RGD PMID:12555660 MGI:MGI:2445277 NCBI chr 4:123,134,457...123,161,985
Ensembl chr 4:123,134,457...123,161,985
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO MGI:MGI:3836442 (MGI:MGI:4359093|PMID:19633665) RGD PMID:19633665 MGI:MGI:4359093 NCBI chr 1:81,412,635...81,441,680
Ensembl chr 1:81,413,353...81,441,678
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO (PMID:10422536) RGD PMID:10422536 NCBI chr 4:5,842,013...5,860,516
Ensembl chr 4:5,841,998...5,860,527
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO (PMID:10422536) RGD PMID:10422536 NCBI chr 6:136,366,917...136,380,751
Ensembl chr 6:136,371,555...136,379,348
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:99,401,775...99,425,739
Ensembl chr 6:99,402,360...99,424,019
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:MGI:1931221|MGI:MGI:2180033 (MGI:MGI:3583382|PMID:15980864), (MGI:MGI:5139938|PMID:21746928) RGD PMID:15980864, PMID:21746928 MGI:MGI:3583382, MGI:MGI:5139938 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 ISO
IBA
(PMID:22759634)
PMID:21873635
RGD PMID:22759634, PMID:21873635 RGD:13792537 NCBI chr13:44,661,375...44,812,430
Ensembl chr13:44,661,398...44,798,543
JBrowse link
DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccne1 cyclin E1 ISO
IEA
MGI:MGI:2675473 (MGI:MGI:2673102|PMID:12941272)
GO_REF:0000107
RGD
Ensembl
PMID:12941272 GO_REF:0000107, MGI:MGI:2673102 NCBI chr 1:94,485,830...94,495,112
Ensembl chr 1:94,485,832...94,494,980
JBrowse link
G Ccne2 cyclin E2 ISO MGI:MGI:2675474 (MGI:MGI:2673102|PMID:12941272) RGD PMID:12941272 MGI:MGI:2673102 NCBI chr 5:24,434,077...24,446,406
Ensembl chr 5:24,434,872...24,446,406
JBrowse link
G Cdc45 cell division cycle 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:86,328,785...86,354,099
Ensembl chr11:86,329,012...86,358,453
JBrowse link
G Cdc6 cell division cycle 6 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:86,819,477...86,833,301
Ensembl chr10:86,819,472...86,833,402
JBrowse link
G Gmnc geminin coiled-coil domain containing IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:77,237,033...77,247,723
Ensembl chr11:77,239,098...77,246,315
JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,224,218...77,245,486
Ensembl chr17:77,224,112...77,246,478
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO (PMID:16899510) RGD PMID:16899510 NCBI chr 4:120,825,699...120,840,221
Ensembl chr 4:120,825,699...120,840,111
JBrowse link
G Mcm5 minichromosome maintenance complex component 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:14,523,482...14,561,281
Ensembl chr19:14,523,554...14,561,278
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:45,042,882...45,068,073
Ensembl chr13:45,042,882...45,068,077
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,306,615...19,313,877
Ensembl chr12:19,306,607...19,314,016
JBrowse link
G Orc1 origin recognition complex, subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:128,186,651...128,212,901
Ensembl chr 5:128,190,708...128,210,445
JBrowse link
G Orc3 origin recognition complex, subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:50,019,159...50,075,533
Ensembl chr 5:50,020,815...50,075,454
JBrowse link
G Orc4 origin recognition complex, subunit 4 ISO
IBA
ISS
(PMID:9353276)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:9353276, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:33,034,913...33,075,833
Ensembl chr 3:33,037,034...33,075,685
JBrowse link
G Orc5 origin recognition complex, subunit 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:9,160,050...9,223,998
Ensembl chr 4:9,160,067...9,223,997
JBrowse link
G Orc6 origin recognition complex, subunit 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:27,457,541...27,464,804
Ensembl chr19:27,457,474...27,464,805
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit ISO
ISS
(PMID:2175912)
GO_REF:0000024
RGD
UniProt
PMID:2175912 GO_REF:0000024 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,297,417...221,321,601
Ensembl chr 1:221,273,538...221,321,570
JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:111,790,655...111,835,224
Ensembl chr 8:111,790,678...111,827,151
JBrowse link
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit ISO
IBA
IEA
MGI:MGI:2447628 (MGI:MGI:2445645|PMID:12429860)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:12429860, PMID:21873635 GO_REF:0000107, MGI:MGI:2445645, RGD:13792537 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:52,403,533...52,452,075
Ensembl chr12:52,403,529...52,452,040
JBrowse link
DNA replication, Okazaki fragment processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 ISS
IEA
GO_REF:0000024
GO_REF:0000104
UniProt GO_REF:0000024, GO_REF:0000104
G Slc25a16 solute carrier family 25 member 16 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:27,283,383...27,308,069
Ensembl chr20:27,254,984...27,308,069
JBrowse link
DNA replication, removal of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Fen1 flap structure-specific endonuclease 1 ISO (PMID:18995831) RGD PMID:18995831 NCBI chr 1:226,251,516...226,256,160
Ensembl chr 1:226,251,518...226,255,886
JBrowse link
G Rnaseh1 ribonuclease H1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:47,916,188...47,925,582
Ensembl chr 6:47,916,188...47,925,571
JBrowse link
G Rnaseh2a ribonuclease H2, subunit A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:26,074,980...26,084,780
Ensembl chr19:26,074,987...26,084,679
JBrowse link
G Slc25a16 solute carrier family 25 member 16 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:27,283,383...27,308,069
Ensembl chr20:27,254,984...27,308,069
JBrowse link
DNA replication, synthesis of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helb DNA helicase B ISO (PMID:12181327) RGD PMID:12181327 NCBI chr 7:64,860,641...64,888,146
Ensembl chr 7:64,860,666...64,887,448
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit ISS
ISO
GO_REF:0000024
(PMID:2175912), (PMID:27019227)
UniProt
RGD
PMID:2175912, PMID:27019227 GO_REF:0000024 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Prim1 DNA primase subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:2,435,524...2,451,169
Ensembl chr 7:2,435,553...2,451,165
JBrowse link
G Prim2 DNA primase subunit 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:38,535,435...38,745,058
Ensembl chr 9:38,536,920...38,745,099
JBrowse link
G Primpol primase and DNA directed polymerase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:48,863,385...48,900,409
Ensembl chr16:48,863,418...48,897,795
JBrowse link
DNA strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tert telomerase reverse transcriptase ISO (PMID:16043710) RGD PMID:16043710 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
DNA strand elongation involved in DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm3 minichromosome maintenance complex component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:26,914,057...26,932,201
Ensembl chr 9:26,914,057...26,932,201
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:89,511,191...89,524,892
Ensembl chr11:89,511,191...89,524,892
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,306,615...19,313,877
Ensembl chr12:19,306,607...19,314,016
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:8,973,861...9,039,616
Ensembl chr 5:8,978,010...9,038,594
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit ISO
ISS
(PMID:4084590)
GO_REF:0000024
RGD
UniProt
PMID:4084590 GO_REF:0000024 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,111,416...86,117,578
Ensembl chr14:86,111,294...86,117,578
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:165,085,142...165,122,385
Ensembl chr 1:165,083,622...165,123,455
JBrowse link
DNA strand elongation involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins1 GINS complex subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:146,695,366...146,716,787
Ensembl chr 3:146,695,344...146,716,816
JBrowse link
DNA strand renaturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:144,865,302...144,871,592
Ensembl chr 7:144,865,608...144,871,585
JBrowse link
G Rad54l RAD54 like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:134,948,511...134,978,125
Ensembl chr 5:134,948,512...134,978,125
JBrowse link
G Recql RecQ like helicase ISO (PMID:19177149) RGD PMID:19177149 NCBI chr 4:176,581,892...176,606,520
Ensembl chr 4:176,581,897...176,606,382
JBrowse link
G Recql4 RecQ like helicase 4 ISO (PMID:19177149) RGD PMID:19177149 NCBI chr 7:117,765,892...117,773,128
Ensembl chr 7:117,763,783...117,773,134
JBrowse link
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:134,634,651...134,719,503
Ensembl chr  X:134,647,703...134,719,097
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:79,943,775...79,990,230
Ensembl chr 9:79,944,132...79,990,229
JBrowse link
G Tp53 tumor protein p53 ISO
ISS
(PMID:8183576)
GO_REF:0000024
RGD
UniProt
PMID:8183576 GO_REF:0000024 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:44,661,375...44,812,430
Ensembl chr13:44,661,398...44,798,543
JBrowse link
DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mre11 MRE11 homolog, double strand break repair nuclease ISS
ISO
IEA
GO_REF:0000024
(PMID:29670289)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29670289 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:13,304,355...13,350,329
Ensembl chr 8:13,305,152...13,352,489
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:28834754), (PMID:29670289) RGD PMID:28834754, PMID:29670289 NCBI chr 3:153,210,829...153,250,705
Ensembl chr 3:153,210,829...153,250,641
JBrowse link
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hrob homologous recombination factor with OB-fold ISO
IEA
ISS
(PMID:31467087)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:31467087 GO_REF:0000024, GO_REF:0000107 NCBI chr10:90,192,608...90,214,486
Ensembl chr10:90,192,627...90,214,486
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) RGD PMID:11470886 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO
ISS
(PMID:1730053), (PMID:24191025), (PMID:3335506)
GO_REF:0000024
RGD
UniProt
PMID:1730053, PMID:3335506, PMID:24191025 GO_REF:0000024 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:219,480,841...219,483,244
Ensembl chr 1:219,481,575...219,483,241
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO (PMID:1730053) RGD PMID:1730053 NCBI chr12:52,403,533...52,452,075
Ensembl chr12:52,403,529...52,452,040
JBrowse link
G Polh DNA polymerase eta ISO (PMID:17563354) RGD PMID:17563354 NCBI chr 9:17,163,354...17,198,006
Ensembl chr 9:17,163,354...17,197,132
JBrowse link
G Sirt1 sirtuin 1 ISO (MGI:MGI:5297784|PMID:17612497) RGD PMID:17612497 MGI:MGI:5297784 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:17563354) RGD PMID:17563354 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
G Wrnip1 WRN helicase interacting protein 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15670210)
Ensembl
UniProt
RGD
PMID:15670210 GO_REF:0000024, GO_REF:0000107 NCBI chr17:32,933,395...32,953,641
Ensembl chr17:32,933,396...32,953,641
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISS
ISO
GO_REF:0000024
(PMID:1730053)
UniProt
RGD
PMID:1730053 GO_REF:0000024 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:165,085,142...165,122,385
Ensembl chr 1:165,083,622...165,123,455
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO MGI:MGI:3052754 (MGI:MGI:5562498|PMID:23993650) RGD PMID:23993650 MGI:MGI:5562498 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
DNA topological change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:8663148) RGD PMID:8663148 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
G Hmgb2 high mobility group box 2 ISS
ISO
GO_REF:0000024
(PMID:11275566)
AgBase
RGD
PMID:11275566 GO_REF:0000024 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr11:49,708,038...49,709,128
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G RGD1559962 similar to High mobility group protein 2 (HMG-2) ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 1:20,416,735...20,417,959
Ensembl chr 1:20,417,008...20,417,637
JBrowse link
G Top1 DNA topoisomerase I IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000104
(MGI:MGI:3612364|PMID:16261531), (MGI:MGI:70738|PMID:7842491)
(PMID:14594810), (PMID:14654701), (PMID:8567649), (PMID:8631793), (PMID:8631794), (PMID:9611241)
UniProt
RGD
PMID:7842491, PMID:8567649, PMID:8631793, PMID:8631794, PMID:9611241, PMID:14594810, PMID:14654701, PMID:16261531, PMID:1332866, PMID:21873635 GO_REF:0000104, MGI:MGI:3612364, MGI:MGI:70738, RGD:1580856, RGD:13792537 NCBI chr 3:156,635,688...156,717,686
Ensembl chr 3:156,642,464...156,717,686
JBrowse link
G Top1mt DNA topoisomerase I mitochondrial IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 7:116,688,801...116,714,421
Ensembl chr 7:116,688,701...116,712,387
JBrowse link
G Top2a DNA topoisomerase II alpha IDA
ISO
IEA
(MGI:MGI:51613|PMID:1331984), (MGI:MGI:895157|PMID:9224616)
(PMID:12711669), (PMID:22323612)
GO_REF:0000002
GO_REF:0000107
RGD
InterPro
Ensembl
PMID:1331984, PMID:9224616, PMID:12711669, PMID:22323612, PMID:11334111 GO_REF:0000002, GO_REF:0000107, MGI:MGI:51613, MGI:MGI:895157, RGD:1580614 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
G Top2b DNA topoisomerase II beta ISO (PMID:10684600) RGD PMID:10684600 NCBI chr15:10,262,972...10,319,741
Ensembl chr15:10,262,651...10,320,233
JBrowse link
G Top3a DNA topoisomerase III alpha ISO
IBA
(PMID:20445207)
PMID:21873635
RGD PMID:20445207, PMID:21873635 RGD:13792537 NCBI chr10:46,980,646...47,018,728
Ensembl chr10:46,981,958...47,018,537
JBrowse link
G Top3b DNA topoisomerase III beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:88,346,305...88,374,896
Ensembl chr11:88,346,313...88,374,679
JBrowse link
double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit IEA
ISO
ISS
GO_REF:0000107
(PMID:17525340), (PMID:17643121), (PMID:19261748)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17525340, PMID:17643121, PMID:19261748 GO_REF:0000024, GO_REF:0000107 NCBI chr14:10,424,674...10,439,010
Ensembl chr14:10,424,674...10,439,003
JBrowse link
G Actr5 actin related protein 5 ISO
IBA
(PMID:19014934)
PMID:21873635
RGD PMID:19014934, PMID:21873635 RGD:13792537 NCBI chr 3:155,118,567...155,132,073
Ensembl chr 3:155,119,042...155,131,829
JBrowse link
G Actr8 actin related protein 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,047,977...6,062,586
Ensembl chr16:6,048,004...6,062,550
JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 IMP
ISO
PMID:19282473
(MGI:MGI:3698695|PMID:17121854)
RGD PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chr 1:170,387,625...170,411,263
Ensembl chr 1:170,387,609...170,404,056
JBrowse link
G Aplf aprataxin and PNKP like factor ISO
IBA
MGI:MGI:4128102 (MGI:MGI:4887518|PMID:21211721)
PMID:21873635
(PMID:17396150)
RGD PMID:17396150, PMID:21211721, PMID:21873635 MGI:MGI:4887518, RGD:13792537 NCBI chr 4:119,514,822...119,568,764
Ensembl chr 4:119,