Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:DNA-dependent DNA replication
go back to main search page
Accession:GO:0006261 term browser browse the term
Definition:A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
Synonyms:alt_id: GO:0006262;   GO:0006263


show annotations for term's descendants       view all columns           Sort by:
 
DNA-dependent DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baz1a bromodomain adjacent to zinc finger domain, 1A JBrowse link 6 75,793,223 75,873,854 RGD:1624291
G Gins4 GINS complex subunit 4 JBrowse link 16 73,584,412 73,596,808 RGD:1600115
G Helb DNA helicase B JBrowse link 7 64,860,641 64,888,146 RGD:1624291
G Mcmbp minichromosome maintenance complex binding protein JBrowse link 1 200,118,226 200,163,106 RGD:1624291
RGD:13792537
RGD:1600115
G Orc6 origin recognition complex, subunit 6 JBrowse link 19 27,457,541 27,464,804 RGD:1624291
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:2299945
RGD:13792537
RGD:2307013
G Pold2 DNA polymerase delta 2, accessory subunit JBrowse link 14 86,111,416 86,117,578 RGD:2307013
G Pold3 DNA polymerase delta 3, accessory subunit JBrowse link 1 165,085,142 165,122,385 RGD:2307013
G Pold4 DNA polymerase delta 4, accessory subunit JBrowse link 1 219,480,841 219,483,244 RGD:2307013
RGD:13792537
G Pole2 DNA polymerase epsilon 2, accessory subunit JBrowse link 6 91,494,348 91,532,355 RGD:13792537
G Polg DNA polymerase gamma, catalytic subunit JBrowse link 1 141,172,117 141,188,893 RGD:1624291
G Polg2 DNA polymerase gamma 2, accessory subunit JBrowse link 10 94,968,836 94,979,259 RGD:1624291
G Poln DNA polymerase nu JBrowse link 14 81,837,764 82,037,999 RGD:13792537
G Polq DNA polymerase theta JBrowse link 11 66,585,860 66,695,369 RGD:13792537
G Rfc2 replication factor C subunit 2 JBrowse link 12 25,130,375 25,143,480 RGD:13792537
G Rfc3 replication factor C subunit 3 JBrowse link 12 1,460,581 1,471,344 RGD:13792537
G Rfc4 replication factor C subunit 4 JBrowse link 11 81,358,592 81,373,044 RGD:13792537
G Rfc5 replication factor C subunit 5 JBrowse link 12 44,931,494 44,941,051 RGD:13792537
G Rpa1 replication protein A1 JBrowse link 10 62,140,419 62,191,518 RGD:13792537
G Rpain RPA interacting protein JBrowse link 10 57,606,287 57,613,834 RGD:1624291
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 JBrowse link 15 24,021,674 24,056,073 RGD:13792537
G Wrnip1 WRN helicase interacting protein 1 JBrowse link 17 32,933,395 32,953,641 RGD:13792537
DNA endoreduplication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zpr1 ZPR1 zinc finger JBrowse link 8 50,563,047 50,572,621 RGD:1624291
DNA replication initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccne1 cyclin E1 JBrowse link 1 94,485,830 94,495,112 RGD:1624291
RGD:1600115
G Ccne2 cyclin E2 JBrowse link 5 24,434,077 24,446,406 RGD:1624291
G Cdc45 cell division cycle 45 JBrowse link 11 86,328,785 86,354,099 RGD:13792537
G Cdc6 cell division cycle 6 JBrowse link 10 86,819,477 86,833,301 RGD:1600115
G Gmnc geminin coiled-coil domain containing JBrowse link 11 77,237,033 77,247,723 RGD:1600115
G Mcm10 minichromosome maintenance 10 replication initiation factor JBrowse link 17 77,224,218 77,245,486 RGD:13792537
G Mcm2 minichromosome maintenance complex component 2 JBrowse link 4 120,825,699 120,840,221 RGD:1624291
G Mcm5 minichromosome maintenance complex component 5 JBrowse link 19 14,523,482 14,561,281 RGD:13792537
G Mcm6 minichromosome maintenance complex component 6 JBrowse link 13 45,042,882 45,068,073 RGD:1600115
G Mcm7 minichromosome maintenance complex component 7 JBrowse link 12 19,306,615 19,313,877 RGD:13792537
G Orc1 origin recognition complex, subunit 1 JBrowse link 5 128,186,651 128,212,901 RGD:13792537
G Orc3 origin recognition complex, subunit 3 JBrowse link 5 50,019,159 50,075,533 RGD:13792537
G Orc4 origin recognition complex, subunit 4 JBrowse link 3 33,034,913 33,075,833 RGD:1624291
RGD:13792537
RGD:1600115
G Orc5 origin recognition complex, subunit 5 JBrowse link 4 9,160,050 9,223,998 RGD:13792537
G Orc6 origin recognition complex, subunit 6 JBrowse link 19 27,457,541 27,464,804 RGD:13792537
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1624291
RGD:1600115
G Pola2 DNA polymerase alpha 2, accessory subunit JBrowse link 1 221,297,417 221,321,601 RGD:13792537
G Topbp1 DNA topoisomerase II binding protein 1 JBrowse link 8 111,790,655 111,835,224 RGD:13792537
DNA replication preinitiation complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdt1 chromatin licensing and DNA replication factor 1 JBrowse link 19 55,381,565 55,386,511 RGD:1624291
RGD:13792537
G Gmnn geminin, DNA replication inhibitor JBrowse link 17 42,302,523 42,310,783 RGD:1624291
DNA replication proofreading term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:1624291
RGD:13792537
RGD:1600115
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:13792537
DNA replication, Okazaki fragment processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dna2 DNA replication helicase/nuclease 2 RGD:1600115
G Slc25a16 solute carrier family 25 member 16 JBrowse link 20 27,283,383 27,308,069 RGD:1600115
DNA replication, synthesis of RNA primer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Helb DNA helicase B JBrowse link 7 64,860,641 64,888,146 RGD:1624291
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1600115
RGD:1624291
G Prim1 DNA primase subunit 1 JBrowse link 7 2,435,524 2,451,169 RGD:13792537
G Prim2 DNA primase subunit 2 JBrowse link 9 38,535,435 38,745,058 RGD:1600115
G Primpol primase and DNA directed polymerase JBrowse link 16 48,863,385 48,900,409 RGD:1600115
DNA strand elongation involved in DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mcm3 minichromosome maintenance complex component 3 JBrowse link 9 26,914,057 26,932,201 RGD:13792537
G Mcm4 minichromosome maintenance complex component 4 JBrowse link 11 89,511,191 89,524,892 RGD:13792537
G Mcm7 minichromosome maintenance complex component 7 JBrowse link 12 19,306,615 19,313,877 RGD:13792537
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1624291
RGD:1600115
G Pold2 DNA polymerase delta 2, accessory subunit JBrowse link 14 86,111,416 86,117,578 RGD:13792537
G Pold3 DNA polymerase delta 3, accessory subunit JBrowse link 1 165,085,142 165,122,385 RGD:13792537
DNA strand elongation involved in mitotic DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gins1 GINS complex subunit 1 JBrowse link 3 146,695,366 146,716,787 RGD:13792537
DNA strand resection involved in replication fork processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link 8 13,304,355 13,350,329 RGD:1600115
RGD:1624291
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 JBrowse link 3 153,210,829 153,250,705 RGD:1624291
DNA unwinding involved in DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Blm BLM RecQ like helicase JBrowse link 1 142,246,773 142,332,616 RGD:13792537
G Mcm2 minichromosome maintenance complex component 2 JBrowse link 4 120,825,699 120,840,221 RGD:1624291
RGD:13792537
G Mcm4 minichromosome maintenance complex component 4 JBrowse link 11 89,511,191 89,524,892 RGD:1624291
RGD:13792537
G Mcm6 minichromosome maintenance complex component 6 JBrowse link 13 45,042,882 45,068,073 RGD:1624291
RGD:13792537
RGD:1600115
G Mcm7 minichromosome maintenance complex component 7 JBrowse link 12 19,306,615 19,313,877 RGD:1624291
RGD:13792537
G Pura purine rich element binding protein A JBrowse link 18 29,104,712 29,114,918 RGD:1624291
RGD:1600115
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:1624291
G Recql RecQ like helicase JBrowse link 4 176,581,892 176,606,520 RGD:13792537
G Recql4 RecQ like helicase 4 JBrowse link 7 117,765,892 117,773,128 RGD:13792537
G Recql5 RecQ like helicase 5 JBrowse link 10 104,443,735 104,482,889 RGD:13792537
G Rpa1 replication protein A1 JBrowse link 10 62,140,419 62,191,518 RGD:13792537
G Ssbp1 single stranded DNA binding protein 1 JBrowse link 4 68,634,844 68,645,112 RGD:1624291
RGD:1600115
G Twnk twinkle mtDNA helicase JBrowse link 1 264,756,060 264,762,892 RGD:1624291
G Wrn WRN RecQ like helicase JBrowse link 16 62,483,773 62,619,018 RGD:13792537
lagging strand elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lig1 DNA ligase 1 JBrowse link 1 75,356,212 75,394,757 RGD:13792537
G Lig3 DNA ligase 3 JBrowse link 10 70,134,734 70,158,051 RGD:13792537
G LOC100911727 DNA ligase 1-like JBrowse link 1 75,224,143 75,264,441 RGD:13792537
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1600115
RGD:13792537
RGD:1624291
leading strand elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07027368.1 RGD:13792537
G LOC100362333 DNA-directed DNA polymerase epsilon 3 JBrowse link 7 118,816,053 118,816,725 RGD:13792537
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:13792537
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1600115
RGD:13792537
RGD:1624291
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:13792537
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:13792537
mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor JBrowse link 20 34,818,093 34,930,157 RGD:1624291
mitochondrial DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dna2 DNA replication helicase/nuclease 2 RGD:1600115
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 JBrowse link 10 11,059,701 11,085,186 RGD:1624291
G Mgme1 mitochondrial genome maintenance exonuclease 1 JBrowse link 3 138,397,925 138,406,672 RGD:1624291
RGD:13792537
G Polg DNA polymerase gamma, catalytic subunit JBrowse link 1 141,172,117 141,188,893 RGD:1624291
RGD:13792537
G Polg2 DNA polymerase gamma 2, accessory subunit JBrowse link 10 94,968,836 94,979,259 RGD:13792537
G Primpol primase and DNA directed polymerase JBrowse link 16 48,863,385 48,900,409 RGD:1624291
RGD:13792537
G Rnaseh1 ribonuclease H1 JBrowse link 6 47,916,188 47,925,582 RGD:1624291
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B JBrowse link 7 76,750,045 76,780,817 RGD:1624291
G Slc25a16 solute carrier family 25 member 16 JBrowse link 20 27,283,383 27,308,069 RGD:1600115
G Ssbp1 single stranded DNA binding protein 1 JBrowse link 4 68,634,844 68,645,112 RGD:13792537
G Tefm transcription elongation factor, mitochondrial JBrowse link 10 67,476,006 67,478,830 RGD:1624291
G Tfam transcription factor A, mitochondrial JBrowse link 20 18,594,057 18,606,106 RGD:727414
G Tk2 thymidine kinase 2 JBrowse link 19 917,203 939,236 RGD:1624291
G Twnk twinkle mtDNA helicase JBrowse link 1 264,756,060 264,762,892 RGD:1624291
RGD:13792537
mitotic DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mcm6 minichromosome maintenance complex component 6 JBrowse link 13 45,042,882 45,068,073 RGD:13792537
mitotic DNA replication initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mcm2 minichromosome maintenance complex component 2 JBrowse link 4 120,825,699 120,840,221 RGD:13792537
G Mcm3 minichromosome maintenance complex component 3 JBrowse link 9 26,914,057 26,932,201 RGD:13792537
G Mcm4 minichromosome maintenance complex component 4 JBrowse link 11 89,511,191 89,524,892 RGD:13792537
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:13792537
mitotic DNA replication preinitiation complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc45 cell division cycle 45 JBrowse link 11 86,328,785 86,354,099 RGD:13792537
mitotic DNA replication termination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtfdc1 replication termination factor 2 domain containing 1 JBrowse link 3 170,443,895 170,473,456 RGD:1600115
mitotic recombination-dependent replication fork processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca2 BRCA2, DNA repair associated JBrowse link 12 503,660 544,754 RGD:1624291
RGD:1600115
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:1600115
mitotic telomere maintenance via semi-conservative replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:1624291
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link 3 176,818,012 176,856,531 RGD:1624291
negative regulation of DNA endoreduplication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo5 F-box protein 5 JBrowse link 1 42,461,277 42,467,646 RGD:1624291
negative regulation of DNA-dependent DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gmnn geminin, DNA replication inhibitor JBrowse link 17 42,302,523 42,310,783 RGD:1624291
negative regulation of mitochondrial DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:11557986
G Lig3 DNA ligase 3 JBrowse link 10 70,134,734 70,158,051 RGD:1624291
nuclear DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atad5 ATPase family, AAA domain containing 5 JBrowse link 10 67,427,042 67,475,825 RGD:1624291
G Donson DNA replication fork stabilization factor DONSON JBrowse link 11 31,834,608 31,847,751 RGD:13792537
G Zfp830 zinc finger protein 830 JBrowse link 10 70,118,250 70,119,714 RGD:1624291
RGD:13792537
Okazaki fragment processing involved in mitotic DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lig1 DNA ligase 1 JBrowse link 1 75,356,212 75,394,757 RGD:13792537
G LOC100911727 DNA ligase 1-like JBrowse link 1 75,224,143 75,264,441 RGD:13792537
positive regulation of DNA endoreduplication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G E2f7 E2F transcription factor 7 JBrowse link 7 53,275,659 53,318,261 RGD:1624291
RGD:1600115
G E2f8 E2F transcription factor 8 JBrowse link 1 104,185,436 104,203,683 RGD:1600115
RGD:1624291
positive regulation of DNA-dependent DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdt1 chromatin licensing and DNA replication factor 1 JBrowse link 19 55,381,565 55,386,511 RGD:1624291
positive regulation of DNA-dependent DNA replication initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk2 cyclin dependent kinase 2 JBrowse link 7 3,124,953 3,132,533 RGD:1624291
RGD:1600115
G Ciz1 CDKN1A interacting zinc finger protein 1 JBrowse link 3 11,392,046 11,409,218 RGD:1624291
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chtf18 chromosome transmission fidelity factor 18 JBrowse link 10 15,090,762 15,098,825 RGD:1624291
G Chtf8 chromosome transmission fidelity factor 8 JBrowse link 19 39,077,580 39,087,880 RGD:1624291
RGD:1600115
G Dscc1 DNA replication and sister chromatid cohesion 1 JBrowse link 7 94,759,076 94,774,787 RGD:1624291
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:11535022
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:1624291
G Polg2 DNA polymerase gamma 2, accessory subunit JBrowse link 10 94,968,836 94,979,259 RGD:1624291
G Rfc2 replication factor C subunit 2 JBrowse link 12 25,130,375 25,143,480 RGD:1624291
RGD:1600115
G Rfc3 replication factor C subunit 3 JBrowse link 12 1,460,581 1,471,344 RGD:1624291
G Rfc4 replication factor C subunit 4 JBrowse link 11 81,358,592 81,373,044 RGD:1624291
G Rfc5 replication factor C subunit 5 JBrowse link 12 44,931,494 44,941,051 RGD:1624291
positive regulation of mitochondrial DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stoml2 stomatin like 2 JBrowse link 5 58,472,561 58,476,158 RGD:1624291
RGD:1600115
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgfr1 Fibroblast growth factor receptor 1 JBrowse link 16 71,265,390 71,319,046 RGD:1624291
RGD:1600115
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1600115
RGD:1624291
G Cdc7 cell division cycle 7 JBrowse link 14 3,826,658 3,846,891 RGD:1624291
G Dbf4 DBF4 zinc finger JBrowse link 4 22,898,527 22,914,091 RGD:13792537
G Dbf4b DBF4 zinc finger B JBrowse link 10 90,710,468 90,723,313 RGD:1624291
G Ino80 INO80 complex ATPase subunit JBrowse link 3 111,186,371 111,266,542 RGD:1624291
G Wiz WIZ zinc finger JBrowse link 7 14,374,358 14,402,647 RGD:1624291
pre-replicative complex assembly involved in nuclear cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mcm2 minichromosome maintenance complex component 2 JBrowse link 4 120,825,699 120,840,221 RGD:13792537
G Mcm3 minichromosome maintenance complex component 3 JBrowse link 9 26,914,057 26,932,201 RGD:13792537
G Mcm4 minichromosome maintenance complex component 4 JBrowse link 11 89,511,191 89,524,892 RGD:13792537
G Mcm5 minichromosome maintenance complex component 5 JBrowse link 19 14,523,482 14,561,281 RGD:13792537
G Mcm6 minichromosome maintenance complex component 6 JBrowse link 13 45,042,882 45,068,073 RGD:13792537
G Mcm7 minichromosome maintenance complex component 7 JBrowse link 12 19,306,615 19,313,877 RGD:13792537
G Orc3 origin recognition complex, subunit 3 JBrowse link 5 50,019,159 50,075,533 RGD:13792537
R-loop disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx21 DExD-box helicase 21 JBrowse link 20 32,213,147 32,232,632 RGD:1624291
RGD:1600115
G Ddx23 DEAD-box helicase 23 JBrowse link 7 140,325,453 140,342,730 RGD:1624291
G Primpol primase and DNA directed polymerase JBrowse link 16 48,863,385 48,900,409 RGD:1624291
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:1624291
RGD:1600115
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:1624291
regulation of DNA endoreduplication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Senp2 SUMO specific peptidase 2 JBrowse link 11 82,627,973 82,664,702 RGD:1624291
regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zfp365 zinc finger protein 365 JBrowse link 20 22,060,160 22,083,766 RGD:1624291
RGD:1600115
regulation of DNA-dependent DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Blm BLM RecQ like helicase JBrowse link 1 142,246,773 142,332,616 RGD:1624291
regulation of DNA-dependent DNA replication initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdt1 chromatin licensing and DNA replication factor 1 JBrowse link 19 55,381,565 55,386,511 RGD:1624291
RGD:13792537
G Kat7 lysine acetyltransferase 7 JBrowse link 10 83,095,067 83,128,342 RGD:1624291
RGD:1600115
G Ticrr TOPBP1-interacting checkpoint and replication regulator JBrowse link 1 141,391,738 141,433,615 RGD:1624291
G Wdr18 WD repeat domain 18 JBrowse link 7 12,561,318 12,569,120 RGD:13792537
G Wrnip1 WRN helicase interacting protein 1 JBrowse link 17 32,933,395 32,953,641 RGD:1600115
RGD:1624291
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zmpste24 zinc metallopeptidase STE24 JBrowse link 5 139,982,404 140,015,541 RGD:1624291
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:1624291
G Cdt1 chromatin licensing and DNA replication factor 1 JBrowse link 19 55,381,565 55,386,511 RGD:1624291
G Dach1 dachshund family transcription factor 1 JBrowse link 15 82,095,003 82,482,272 RGD:1624291
G Ilkap ILK associated serine/threonine phosphatase JBrowse link 9 98,514,599 98,536,586 RGD:632254
G Nuggc nuclear GTPase, germinal center associated JBrowse link 15 49,011,951 49,055,246 RGD:1624291
replication fork arrest term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Msh3 mutS homolog 3 JBrowse link 2 21,790,048 21,931,791 RGD:13792537
G Slfn13 schlafen family member 13 JBrowse link 10 70,326,157 70,343,024 RGD:1624291
G Timeless timeless circadian regulator JBrowse link 7 2,643,288 2,667,329 RGD:13792537
G Tipin timeless interacting protein JBrowse link 8 69,753,363 69,768,640 RGD:13792537
G Tipinl1 TIMELESS interacting protein like 1 JBrowse link 5 173,761 174,959 RGD:13792537
replication fork processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07030926.1 RGD:13792537
G Alyref Aly/REF export factor JBrowse link 10 109,768,593 109,774,639 RGD:1624291
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1600115
RGD:1624291
G Blm BLM RecQ like helicase JBrowse link 1 142,246,773 142,332,616 RGD:1624291
G Bod1l1 biorientation of chromosomes in cell division 1-like 1 JBrowse link 14 73,738,137 73,792,935 RGD:1624291
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:1624291
G Cenps centromere protein S JBrowse link 5 165,946,106 165,955,723 RGD:1624291
G Cenpx centromere protein X JBrowse link 10 109,890,904 109,893,804 RGD:1624291
G Da2-19 uncharacterized LOC302729 JBrowse link X 48,196,789 48,213,506 RGD:1600115
G Ddx11 DEAD/H-box helicase 11 JBrowse link 9 114,113,642 114,133,908 RGD:1624291
G Eme1 essential meiotic structure-specific endonuclease 1 JBrowse link 10 82,366,820 82,375,510 RGD:13792537
G Eme2 essential meiotic structure-specific endonuclease subunit 2 JBrowse link 10 14,253,552 14,257,017 RGD:13792537
G Etaa1 ETAA1 activator of ATR kinase JBrowse link 14 102,290,655 102,293,674 RGD:1624291
RGD:13792537
G Exd2 exonuclease 3'-5' domain containing 2 JBrowse link 6 104,017,620 104,051,442 RGD:1624291
G Fancm FA complementation group M JBrowse link 6 86,823,195 86,877,067 RGD:1624291
G Fbh1 F-box DNA helicase 1 JBrowse link 17 70,399,093 70,437,151 RGD:1624291
RGD:13792537
G Gen1 GEN1 Holliday junction 5' flap endonuclease JBrowse link 6 36,910,064 36,940,868 RGD:1624291
G Mms22l MMS22-like, DNA repair protein JBrowse link 5 38,844,502 38,960,989 RGD:1624291
RGD:13792537
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 JBrowse link 13 48,679,726 48,709,663 RGD:1624291
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:1624291
G Primpol primase and DNA directed polymerase JBrowse link 16 48,863,385 48,900,409 RGD:13792537
RGD:1624291
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:1624291
G Rfwd3 ring finger and WD repeat domain 3 JBrowse link 19 42,960,597 42,971,894 RGD:1624291
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link 3 176,818,012 176,856,531 RGD:1624291
G Setmar SET domain and mariner transposase fusion gene JBrowse link 4 140,092,346 140,104,495 RGD:1624291
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 JBrowse link 9 79,943,775 79,990,230 RGD:1624291
RGD:13792537
RGD:1600115
G Thoc1 THO complex 1 JBrowse link 18 1,142,540 1,177,084 RGD:1624291
G Tonsl tonsoku-like, DNA repair protein JBrowse link 7 117,688,397 117,703,139 RGD:1600115
RGD:1624291
G Wrn WRN RecQ like helicase JBrowse link 16 62,483,773 62,619,018 RGD:1624291
G Zranb3 zinc finger RANBP2-type containing 3 JBrowse link 13 44,661,375 44,812,430 RGD:1624291
RGD:13792537
replication fork protection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca2 BRCA2, DNA repair associated JBrowse link 12 503,660 544,754 RGD:1624291
RGD:1600115
G Donson DNA replication fork stabilization factor DONSON JBrowse link 11 31,834,608 31,847,751 RGD:1624291
G Fbh1 F-box DNA helicase 1 JBrowse link 17 70,399,093 70,437,151 RGD:1624291
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 JBrowse link 9 79,943,775 79,990,230 RGD:13792537
G Timeless timeless circadian regulator JBrowse link 7 2,643,288 2,667,329 RGD:13792537
G Tipin timeless interacting protein JBrowse link 8 69,753,363 69,768,640 RGD:13792537
RGD:1600115
G Tipinl1 TIMELESS interacting protein like 1 JBrowse link 5 173,761 174,959 RGD:13792537
G Zfp830 zinc finger protein 830 JBrowse link 10 70,118,250 70,119,714 RGD:1624291
RGD:13792537
RGD:1600115
G Zranb3 zinc finger RANBP2-type containing 3 JBrowse link 13 44,661,375 44,812,430 RGD:1624291
RGD:13792537
replication fork reversal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dna2 DNA replication helicase/nuclease 2 RGD:13792537
G Fancm FA complementation group M JBrowse link 6 86,823,195 86,877,067 RGD:13792537
signal transduction involved in intra-S DNA damage checkpoint term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chek2 checkpoint kinase 2 JBrowse link 12 51,845,574 51,878,098 RGD:1624291
site-specific DNA replication termination at RTS1 barrier term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtfdc1 replication termination factor 2 domain containing 1 JBrowse link 3 170,443,895 170,473,456 RGD:13792537
telomere maintenance via semi-conservative replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      cellular metabolic process 10737
        cellular biosynthetic process 5791
          cellular macromolecule biosynthetic process 4805
            DNA replication 246
              DNA-dependent DNA replication 145
                DNA replication initiation + 27
                DNA replication termination + 1
                DNA replication, synthesis of RNA primer + 5
                DNA strand elongation involved in DNA replication + 17
                DNA unwinding involved in DNA replication + 14
                DNA-dependent DNA replication DNA ligation + 0
                DNA-dependent DNA replication maintenance of fidelity + 45
                R-loop disassembly 5
                cell cycle DNA replication + 41
                mitochondrial DNA replication + 17
                negative regulation of DNA-dependent DNA replication + 16
                plastid DNA replication 0
                positive regulation of DNA-dependent DNA replication + 13
                pre-replicative complex assembly + 7
                regulation of DNA-dependent DNA replication + 51
                rolling circle DNA replication 0
                theta DNA replication 0
Path 2
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      organic substance metabolic process 11299
        macromolecule metabolic process 9767
          macromolecule biosynthetic process 4939
            cellular macromolecule biosynthetic process 4805
              DNA replication 246
                DNA-dependent DNA replication 145
                  DNA replication initiation + 27
                  DNA replication termination + 1
                  DNA replication, synthesis of RNA primer + 5
                  DNA strand elongation involved in DNA replication + 17
                  DNA unwinding involved in DNA replication + 14
                  DNA-dependent DNA replication DNA ligation + 0
                  DNA-dependent DNA replication maintenance of fidelity + 45
                  R-loop disassembly 5
                  cell cycle DNA replication + 41
                  mitochondrial DNA replication + 17
                  negative regulation of DNA-dependent DNA replication + 16
                  plastid DNA replication 0
                  positive regulation of DNA-dependent DNA replication + 13
                  pre-replicative complex assembly + 7
                  regulation of DNA-dependent DNA replication + 51
                  rolling circle DNA replication 0
                  theta DNA replication 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.