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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA repair
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Accession:GO:0006281 term browser browse the term
Definition:The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Synonyms:xref: Wikipedia:DNA_repair


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DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adprs ADP-ribosylserine hydrolase ISO (PMID:30045870) UniProt PMID:30045870 NCBI chrNW_004955452:14,123,590...14,126,522 JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530), (PMID:19959401) UniProtKB PMID:18603530, PMID:19959401 NCBI chrNW_004955438:1,531,114...1,556,483 JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase ISO (PMID:16858410) UniProtKB PMID:16858410 NCBI chrNW_004955422:3,660,504...3,695,352 JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT ISO (MGI:MGI:5800654|PMID:27010503) UniProtKB PMID:27010503 MGI:MGI:5800654 NCBI chrNW_004955524:933,200...936,933 JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO (PMID:9560228) UniProtKB PMID:9560228 NCBI chrNW_004955550:1,273,170...1,275,843 JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chrNW_004955436:1,635,397...1,640,989 JBrowse link
G Atm ATM serine/threonine kinase ISO (MGI:MGI:3053255|PMID:15364958)
(MGI:MGI:3511081|PMID:15542845)
(MGI:MGI:2156121|PMID:11679583)
MGI PMID:11679583, PMID:15364958, PMID:15542845 MGI:MGI:2156121, MGI:MGI:3053255, MGI:MGI:3511081 NCBI chrNW_004955412:10,422,753...10,531,406 JBrowse link
G Atr ATR serine/threonine kinase ISO (MGI:MGI:3053255|PMID:15364958) MGI PMID:15364958 MGI:MGI:3053255 NCBI chrNW_004955508:3,337,036...3,440,313 JBrowse link
G Bach1 BTB domain and CNC homolog 1 ISO (PMID:11301010) CACAO PMID:11301010 NCBI chrNW_004955407:28,678,181...28,701,115 JBrowse link
G Blm BLM RecQ like helicase ISO (MGI:MGI:3053255|PMID:15364958) MGI PMID:15364958 MGI:MGI:3053255 NCBI chrNW_004955416:14,814,753...14,899,865 JBrowse link
G Cenps centromere protein S ISO (PMID:20347429) UniProtKB PMID:20347429 NCBI chrNW_004955486:3,157,535...3,167,424 JBrowse link
G Chek1 checkpoint kinase 1 ISO (MGI:MGI:3053255|PMID:15364958)
(PMID:19716789)
MGI
UniProtKB
PMID:15364958, PMID:19716789 MGI:MGI:3053255 NCBI chrNW_004955412:26,627,606...26,650,554 JBrowse link
G Chrna4 cholinergic receptor nicotinic alpha 4 subunit ISO (PMID:16332175) UniProtKB PMID:16332175 NCBI chrNW_004955528:825,314...840,994 JBrowse link
G Endov endonuclease V ISO (MGI:MGI:5009179|PMID:12853604) UniProtKB PMID:12853604 MGI:MGI:5009179 NCBI chrNW_004955506:2,483,409...2,495,484 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:25538220)
(MGI:MGI:2446381|PMID:12466203)
MGI PMID:12466203, PMID:25538220 MGI:MGI:2446381 NCBI chrNW_004955555:2,393,510...2,430,180 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (MGI:MGI:2179786|PMID:11950998) MGI PMID:11950998 MGI:MGI:2179786 NCBI chrNW_004955555:2,355,005...2,369,599 JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:2167179) UniProtKB PMID:2167179 NCBI chrNW_004955459:3,210,936...3,238,401 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:19596235)
(MGI:MGI:3027419|PMID:14729965)
(PMID:17055345)
UniProtKB
MGI
BHF-UCL
PMID:14729965, PMID:17055345, PMID:19596235 MGI:MGI:3027419 NCBI chrNW_004955442:4,833,453...4,861,201 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO (MGI:MGI:3041918|PMID:15082767) MGI PMID:15082767 MGI:MGI:3041918 NCBI chrNW_004955404:8,294,506...8,321,505 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:26218421)
(MGI:MGI:1861042|PMID:10806208)
(MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
UniProt
MGI
PMID:10806208, PMID:12447686, PMID:17213818, PMID:26218421 MGI:MGI:1861042, MGI:MGI:3715683, MGI:MGI:3759387 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603073) UniProtKB PMID:20603073 NCBI chrNW_004955416:29,722,280...29,757,960 JBrowse link
G Fancl FA complementation group L ISO (PMID:16916645) UniProtKB PMID:16916645 NCBI chrNW_004955424:25,251,701...25,307,236 JBrowse link
G Fen1 flap structure-specific endonuclease 1 ISO (MGI:MGI:2668283|PMID:12861020) MGI PMID:12861020 MGI:MGI:2668283 NCBI chrNW_004955511:5,918,667...5,922,506 JBrowse link
G Hdac9 histone deacetylase 9 ISO (MGI:MGI:5139938|PMID:21746928) MGI PMID:21746928 MGI:MGI:5139938 NCBI chrNW_004955410:21,046,312...21,932,029 JBrowse link
G Hinfp histone H4 transcription factor ISO (PMID:17974976) UniProtKB PMID:17974976 NCBI chrNW_004955412:20,236,607...20,247,288 JBrowse link
G Inip INTS3 and NABP interacting protein ISO (PMID:19605351) UniProtKB PMID:19605351 NCBI chrNW_004955419:14,729,275...14,732,971 JBrowse link
G Ints3 integrator complex subunit 3 ISO (PMID:19605351), (PMID:19683501) UniProtKB PMID:19605351, PMID:19683501 NCBI chrNW_004955545:352,170...394,751 JBrowse link
G Kmt5b lysine methyltransferase 5B ISO (PMID:28114273) UniProt PMID:28114273 NCBI chrNW_004955422:17,626,606...17,684,890 JBrowse link
G Kmt5c lysine methyltransferase 5C ISO (PMID:28114273) UniProt PMID:28114273 NCBI chrNW_004955567:895,334...901,240 JBrowse link
G Lig1 DNA ligase 1 NOT ISO (MGI:MGI:2178155|PMID:11896201)
(MGI:MGI:4943978|PMID:21390131)
RGD
MGI
PMID:1730240, PMID:11896201, PMID:21390131 MGI:MGI:2178155, MGI:MGI:4943978, RGD:724410 NCBI chrNW_004955609:118,442...160,009 JBrowse link
G Lig4 DNA ligase 4 ISO (MGI:MGI:4943978|PMID:21390131)
(MGI:MGI:3037169|PMID:11779495)
MGI PMID:11779495, PMID:21390131 MGI:MGI:3037169, MGI:MGI:4943978 NCBI chrNW_004955404:3,606,077...3,615,193 JBrowse link
G LOC102025775 histone H2AX ISO (MGI:MGI:3053255|PMID:15364958)
(MGI:MGI:2179182|PMID:11934988)
MGI PMID:11934988, PMID:15364958 MGI:MGI:2179182, MGI:MGI:3053255 NCBI chrNW_004955412:20,203,173...20,204,714 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO (MGI:MGI:2677087|PMID:13679151) MGI PMID:13679151 MGI:MGI:2677087 NCBI chrNW_004955477:7,103,035...7,375,073 JBrowse link
G Mlh1 mutL homolog 1 ISO (MGI:MGI:2677087|PMID:13679151)
(MGI:MGI:3513725|PMID:15480418)
MGI PMID:13679151, PMID:15480418 MGI:MGI:2677087, MGI:MGI:3513725 NCBI chrNW_004955421:3,890,291...3,936,892 JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component ISO (PMID:22678362) UniProtKB PMID:22678362 NCBI chrNW_004955507:3,593,413...3,623,781 JBrowse link
G Msh2 mutS homolog 2 ISO (MGI:MGI:2667543|PMID:12687013)
(PMID:8942985)
MGI
BHF-UCL
PMID:8942985, PMID:12687013 MGI:MGI:2667543 NCBI chrNW_004955441:14,188,315...14,247,608 JBrowse link
G Msh3 mutS homolog 3 ISO (PMID:8942985) BHF-UCL PMID:8942985 NCBI chrNW_004955418:29,149,595...29,274,067 JBrowse link
G Msh6 mutS homolog 6 ISO (PMID:8942985) BHF-UCL PMID:8942985 NCBI chrNW_004955441:14,451,207...14,471,316 JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit ISO (PMID:19596235) UniProtKB PMID:19596235 NCBI chrNW_004955422:19,471,552...19,479,121 JBrowse link
G Nabp1 nucleic acid binding protein 1 ISO (PMID:19683501) UniProtKB PMID:19683501 NCBI chrNW_004955403:7,603,002...7,610,925 JBrowse link
G Nabp2 nucleic acid binding protein 2 ISO (MGI:MGI:5629774|PMID:25589350)
(PMID:18449195), (PMID:19683501)
BHF-UCL
UniProtKB
PMID:18449195, PMID:19683501, PMID:25589350 MGI:MGI:5629774 NCBI chrNW_004955458:3,835,205...3,836,841 JBrowse link
G Neil1 nei like DNA glycosylase 1 ISO (MGI:MGI:2389521|PMID:12200441) MGI PMID:12200441 MGI:MGI:2389521 NCBI chrNW_004955450:2,883,344...2,889,593 JBrowse link
G Nop53 NOP53 ribosome biogenesis factor ISO (PMID:21741933) UniProtKB PMID:21741933 NCBI chrNW_004955574:1,505,997...1,514,680 JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:19188445) UniProtKB PMID:19188445 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component ISO (PMID:27427983) UniProtKB PMID:27427983 NCBI chrNW_004955416:29,261,347...29,262,696 JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase ISO (MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
(MGI:MGI:2668786|PMID:12874039)
(MGI:MGI:2150199|PMID:11532868), (MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
MGI PMID:11532868, PMID:12447686, PMID:12874039, PMID:17213818 MGI:MGI:2150199, MGI:MGI:2668786, MGI:MGI:3715683, MGI:MGI:3759387 NCBI chrNW_004955561:1,277,362...1,282,949 JBrowse link
G Park7 Parkinsonism associated deglycase ISO (PMID:28596309) UniProtKB PMID:28596309 NCBI chrNW_004955486:4,974,130...4,985,927 JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO (MGI:MGI:3513725|PMID:15480418) MGI PMID:15480418 MGI:MGI:3513725 NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase ISO (PMID:10446192) UniProt PMID:10446192 NCBI chrNW_004955559:1,064,924...1,070,120 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:11470886)
(PMID:3335506)
UniProtKB PMID:3335506, PMID:11470886 NCBI chrNW_004955509:5,007,385...5,319,683 JBrowse link
G Polk DNA polymerase kappa ISO (PMID:28297716)
(MGI:MGI:2445277|PMID:12555660)
UniProtKB
MGI
PMID:12555660, PMID:28297716 MGI:MGI:2445277 NCBI chrNW_004955425:25,164,749...25,228,064 JBrowse link
G Polq DNA polymerase theta ISO (MGI:MGI:3511081|PMID:15542845)
(MGI:MGI:2654407|PMID:12663541), (MGI:MGI:3511081|PMID:15542845)
MGI PMID:12663541, PMID:15542845 MGI:MGI:2654407, MGI:MGI:3511081 NCBI chrNW_004955427:20,779,332...20,895,094 JBrowse link
G Psme4 proteasome activator subunit 4 ISO (MGI:MGI:5494329|PMID:23706739) UniProtKB PMID:23706739 MGI:MGI:5494329 NCBI chrNW_004955441:19,586,567...19,663,335 JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor ISO (PMID:20347427) UniProtKB PMID:20347427 NCBI chrNW_004955495:6,552,305...6,574,191 JBrowse link
G Rad50 RAD50 double strand break repair protein ISO (PMID:9705271) UniProtKB PMID:9705271 NCBI chrNW_004955408:3,953,801...4,035,494 JBrowse link
G Rad51c RAD51 paralog C ISO (PMID:19451272) UniProtKB PMID:19451272 NCBI chrNW_004955451:4,053,195...4,178,226 JBrowse link
G Recql5 RecQ like helicase 5 ISO (PMID:22973052) UniProtKB PMID:22973052 NCBI chrNW_004955506:6,574,802...6,612,763 JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit ISO (MGI:MGI:2176643|PMID:11884603) MGI PMID:11884603 MGI:MGI:2176643 NCBI chrNW_004955411:36,068,248...36,246,607 JBrowse link
G Rpa1 replication protein A1 ISO (PMID:18469000) CACAO PMID:18469000 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Rpain RPA interacting protein ISO (PMID:16135809) MGI PMID:16135809 NCBI chrNW_004955467:10,780,818...10,788,137 JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B ISO (MGI:MGI:2670318|PMID:12858174) MGI PMID:12858174 MGI:MGI:2670318 NCBI chrNW_004955417:26,949,686...26,976,976 JBrowse link
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit ISO (PMID:19595721), (PMID:19595722), (PMID:19596235), (PMID:19596236) UniProtKB PMID:19595721, PMID:19595722, PMID:19596235, PMID:19596236 NCBI chrNW_004955493:6,797,913...6,800,555 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit ISO (PMID:19595722) UniProtKB PMID:19595722 NCBI chrNW_004955442:13,765,660...13,792,106 JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 ISO RGD PMID:12718542 RGD:2317001 NCBI chrNW_004955458:1,432,988...1,449,019 JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 ISO (PMID:17948061)
(MGI:MGI:4943978|PMID:21390131)
UniProtKB
MGI
PMID:17948061, PMID:21390131 MGI:MGI:4943978 NCBI chrNW_004955438:12,421,790...12,510,243 JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO (MGI:MGI:3053255|PMID:15364958) MGI PMID:15364958 MGI:MGI:3053255 NCBI chrNW_004955416:9,962,736...10,035,433 JBrowse link
G Trim28 tripartite motif containing 28 ISO (PMID:17178852) UniProtKB PMID:17178852 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A ISO (PMID:1717990) UniProtKB PMID:1717990 NCBI chrNW_004955534:411,602...485,964 JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B ISO (PMID:1717990) UniProtKB PMID:1717990 NCBI chrNW_004955408:5,552,619...5,572,145 JBrowse link
G Ube2t ubiquitin conjugating enzyme E2 T ISO (PMID:16916645) UniProtKB PMID:16916645 NCBI chrNW_004955406:38,391,824...38,400,946 JBrowse link
G Upf1 UPF1 RNA helicase and ATPase ISO (PMID:16488880) HGNC PMID:16488880 NCBI chrNW_004955524:2,798,336...2,814,063 JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO (PMID:17980597) UniProtKB PMID:17980597 NCBI chrNW_004955450:11,729,433...11,802,462 JBrowse link
G Usp45 ubiquitin specific peptidase 45 ISO (PMID:25538220) MGI PMID:25538220 NCBI chrNW_004955411:25,315,536...25,375,283 JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:22542840)
(MGI:MGI:5644018|PMID:22542840)
UniProtKB PMID:22542840 MGI:MGI:5644018 NCBI chrNW_004955414:15,733,116...16,043,555 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (PMID:1601884)
(MGI:MGI:1270007|PMID:9661901), (MGI:MGI:2179786|PMID:11950998)
CAFA
MGI
PMID:1601884, PMID:9661901, PMID:11950998 MGI:MGI:1270007, MGI:MGI:2179786 NCBI chrNW_004955419:27,751,042...27,774,917 JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:MGI:2445277|PMID:12555660) MGI PMID:12555660 MGI:MGI:2445277 NCBI chrNW_004955429:16,935,901...16,968,285 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO (MGI:MGI:4359093|PMID:19633665) MGI PMID:19633665 MGI:MGI:4359093 NCBI chrNW_004955555:1,293,416...1,315,839 JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO (PMID:10422536) BHF-UCL PMID:10422536 NCBI chrNW_004955491:6,579,443...6,629,410 JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO (PMID:10422536) BHF-UCL PMID:10422536 NCBI chrNW_004955538:2,499,297...2,511,898 JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chrNW_004955466:5,353,355...5,376,240 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO (MGI:MGI:5139938|PMID:21746928)
(MGI:MGI:3583382|PMID:15980864), (MGI:MGI:5139938|PMID:21746928)
MGI PMID:15980864, PMID:21746928 MGI:MGI:3583382, MGI:MGI:5139938 NCBI chrNW_004955537:82,724...134,609 JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 ISO (PMID:22759634) UniProtKB PMID:22759634 NCBI chrNW_004955440:2,683,041...2,907,859 JBrowse link
base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO (PMID:8932386) CAFA PMID:8932386 NCBI chrNW_004955550:1,273,170...1,275,843 JBrowse link
G Dna2 DNA replication helicase/nuclease 2 ISO (PMID:18995831) UniProtKB PMID:18995831 NCBI chrNW_004955425:20,664,412...20,705,070 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:9973627) UniProtKB PMID:9973627 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Hmga1 high mobility group AT-hook 1 ISO (PMID:19465398) UniProtKB PMID:19465398 NCBI chrNW_004955437:2,478,414...2,486,809 JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:19465398) UniProtKB PMID:19465398 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:MGI:3722031|PMID:17803946) UniProt PMID:17803946 MGI:MGI:3722031 NCBI chrNW_004955431:15,373,207...15,377,339 JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 ISO (PMID:19713937) UniProtKB PMID:19713937 NCBI chrNW_004955475:550,643...671,771 JBrowse link
G Lig1 DNA ligase 1 ISO (PMID:19589734) BHF-UCL PMID:19589734 NCBI chrNW_004955609:118,442...160,009 JBrowse link
G Mpg N-methylpurine DNA glycosylase ISO (MGI:MGI:2181327|PMID:9371767)
(MGI:MGI:3028824|PMID:15177041)
MGI PMID:9371767, PMID:15177041 MGI:MGI:2181327, MGI:MGI:3028824 NCBI chrNW_004955442:17,068,327...17,077,569 JBrowse link
G Neil1 nei like DNA glycosylase 1 ISO (PMID:17611195) UniProtKB PMID:17611195 NCBI chrNW_004955450:2,883,344...2,889,593 JBrowse link
G Neil3 nei like DNA glycosylase 3 ISO (PMID:23755964)
(MGI:MGI:4440390|PMID:20185759)
HGNC
UniProtKB
PMID:20185759, PMID:23755964 MGI:MGI:4440390 NCBI chrNW_004955403:30,549,779...30,591,757 JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase ISO (MGI:MGI:894433|PMID:9207108)
(MGI:MGI:1349233|PMID:10570187)
MGI
RGD
PMID:9207108, PMID:9801319, PMID:10570187 MGI:MGI:1349233, MGI:MGI:894433, RGD:729091 NCBI chrNW_004955561:1,277,362...1,282,949 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO (MGI:MGI:2181257|PMID:11948190) MGI PMID:11948190 MGI:MGI:2181257 NCBI chrNW_004955489:520,875...557,609 JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 ISO (MGI:MGI:2181257|PMID:11948190) MGI PMID:11948190 MGI:MGI:2181257 NCBI chrNW_004955550:1,138,976...1,152,293 JBrowse link
G Polb DNA polymerase beta ISO (PMID:21362556)
(PMID:16600869)
UniProtKB PMID:16600869, PMID:21362556 NCBI chrNW_004955536:542,179...595,198 JBrowse link
G Polq DNA polymerase theta ISO (PMID:19188258) UniProtKB PMID:19188258 NCBI chrNW_004955427:20,779,332...20,895,094 JBrowse link
G Rpa1 replication protein A1 ISO (PMID:9765279) UniProtKB PMID:9765279 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Rpa2 replication protein A2 ISO (PMID:9765279) UniProtKB PMID:9765279 NCBI chrNW_004955452:7,080,641...7,098,009 JBrowse link
G Rpa3 replication protein A3 ISO (PMID:9765279) UniProtKB PMID:9765279 NCBI chrNW_004955432:14,723,933...14,727,356 JBrowse link
G Sirt6 sirtuin 6 ISO (MGI:MGI:3663736|PMID:16439206) CACAO PMID:16439206 MGI:MGI:3663736 NCBI chrNW_004955495:4,641,883...4,650,518 JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 ISO (PMID:12161446)
PMID:12718543
HGNC PMID:12161446, PMID:12718543 RGD:634191 NCBI chrNW_004955458:1,432,988...1,449,019 JBrowse link
G Tdg thymine DNA glycosylase ISO (MGI:MGI:5287540|PMID:21817016)
(PMID:21862836), (PMID:22327402)
UniProtKB PMID:21817016, PMID:21862836, PMID:22327402 MGI:MGI:5287540 NCBI chrNW_004955405:38,661,687...38,680,138 JBrowse link
G Ung uracil DNA glycosylase ISO (PMID:12161446) RGD
HGNC
PMID:12161446, PMID:12167490 RGD:634481 NCBI chrNW_004955455:10,266,989...10,282,196 JBrowse link
G Usp47 ubiquitin specific peptidase 47 ISO (PMID:21362556) UniProtKB PMID:21362556 NCBI chrNW_004955414:27,357,602...27,462,481 JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:17611195) UniProtKB PMID:17611195 NCBI chrNW_004955463:7,495,243...7,633,532 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO RGD PMID:17412650 RGD:2302580 NCBI chrNW_004955555:1,293,416...1,315,839 JBrowse link
base-excision repair, AP site formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nthl1 nth like DNA glycosylase 1 ISO (PMID:15358233) UniProtKB PMID:15358233 NCBI chrNW_004955442:15,210,799...15,223,272 JBrowse link
G Tdg thymine DNA glycosylase ISO (PMID:11889051)
(PMID:18512959)
CAFA PMID:11889051, PMID:18512959 NCBI chrNW_004955405:38,661,687...38,680,138 JBrowse link
base-excision repair, AP site formation via deaminated base removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ung uracil DNA glycosylase ISO (PMID:18973764) UniProtKB PMID:18973764 NCBI chrNW_004955455:10,266,989...10,282,196 JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig3 DNA ligase 3 ISO (PMID:19589734)
(PMID:24674627)
BHF-UCL
RGD
PMID:17412650, PMID:19589734, PMID:24674627 RGD:2302580 NCBI chrNW_004955481:9,696,050...9,716,154 JBrowse link
base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen ISO (MGI:MGI:3045901|PMID:15177179) MGI PMID:15177179 MGI:MGI:3045901 NCBI chrNW_004955415:15,744,601...15,748,910 JBrowse link
G Polb DNA polymerase beta ISO (MGI:MGI:3045901|PMID:15177179) MGI
RGD
PMID:15177179, PMID:17412650 MGI:MGI:3045901, RGD:2302580 NCBI chrNW_004955536:542,179...595,198 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (MGI:MGI:3045901|PMID:15177179)
(PMID:10559260), (PMID:10559261)
MGI
UniProtKB
PMID:10559260, PMID:10559261, PMID:15177179 MGI:MGI:3045901 NCBI chrNW_004955559:712,375...730,551 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO (PMID:10559260) UniProtKB PMID:10559260 NCBI chrNW_004955482:373,467...418,000 JBrowse link
G Polg DNA polymerase gamma, catalytic subunit ISO (PMID:15177179) MGI PMID:15177179 NCBI chrNW_004955416:15,773,005...15,788,736 JBrowse link
G Poll DNA polymerase lambda ISO (PMID:19806195) UniProtKB PMID:19806195 NCBI chrNW_004955485:8,691,886...8,700,681 JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530) UniProtKB PMID:18603530 NCBI chrNW_004955438:1,531,114...1,556,483 JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase ISO (PMID:18432238) UniProtKB PMID:18432238 NCBI chrNW_004955455:10,258,736...10,265,100 JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase ISO (PMID:16858410), (PMID:22055184) UniProtKB PMID:16858410, PMID:22055184 NCBI chrNW_004955422:3,660,504...3,695,352 JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 ISO (PMID:22055184) UniProtKB PMID:22055184 NCBI chrNW_004955411:26,305,103...26,599,375 JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase ISO (MGI:MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:20376003)
BHF-UCL
UniProtKB
PMID:18775698, PMID:20376003 MGI:MGI:3817348 NCBI chrNW_004955433:11,424,069...11,834,955 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO (MGI:MGI:50172|PMID:1554415) RGD
MGI
PMID:1554415, PMID:15025514 MGI:MGI:50172, RGD:2316914 NCBI chrNW_004955477:7,103,035...7,375,073 JBrowse link
DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase ISO (PMID:21325134) UniProtKB PMID:21325134 NCBI chrNW_004955416:14,814,753...14,899,865 JBrowse link
G Dna2 DNA replication helicase/nuclease 2 ISO (PMID:21325134) UniProtKB PMID:21325134 NCBI chrNW_004955425:20,664,412...20,705,070 JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 ISO (PMID:26807646) UniProtKB PMID:26807646 NCBI chrNW_004955466:1,114,299...1,169,124 JBrowse link
G LOC102020128 histone-lysine N-methyltransferase SETMAR ISO (PMID:21491884) UniProtKB PMID:21491884 NCBI chrNW_004955421:9,066,906...9,080,352 JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N ISO (PMID:17349954) HGNC PMID:17349954 NCBI chrNW_004955405:30,240,402...30,278,362 JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO (PMID:17349954) HGNC PMID:17349954 NCBI chrNW_004955454:7,951,876...7,998,686 JBrowse link
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad52 RAD52 homolog, DNA repair protein ISO (PMID:19506022)
(MGI:MGI:5619739|PMID:22912580)
MGI
CACAO
PMID:19506022, PMID:22912580 MGI:MGI:5619739 NCBI chrNW_004955454:6,206,195...6,227,859 JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO (PMID:18716619), (PMID:19202191) UniProtKB PMID:18716619, PMID:19202191 NCBI chrNW_004955402:11,245,857...11,331,872 JBrowse link
G Rnf138 ring finger protein 138 ISO (PMID:26502057) UniProtKB PMID:26502057 NCBI chrNW_004955402:19,344,480...19,358,799 JBrowse link
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit ISO (PMID:19595721) UniProtKB PMID:19595721 NCBI chrNW_004955493:6,797,913...6,800,555 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit ISO (PMID:19595721) UniProtKB PMID:19595721 NCBI chrNW_004955442:13,765,660...13,792,106 JBrowse link
DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 ISO (PMID:9600082) UniProt PMID:9600082 NCBI chrNW_004955431:15,373,207...15,377,339 JBrowse link
G Hmgb2 high mobility group box 2 ISO (PMID:9600082) AgBase PMID:9600082 NCBI chrNW_004955403:33,656,314...33,659,115 JBrowse link
G Lig4 DNA ligase 4 ISO (PMID:12517771)
(MGI:MGI:1312981|PMID:9823897)
UniProtKB
MGI
PMID:9823897, PMID:12517771 MGI:MGI:1312981 NCBI chrNW_004955404:3,606,077...3,615,193 JBrowse link
G Paxx PAXX non-homologous end joining factor ISO (PMID:25574025) UniProtKB PMID:25574025 NCBI chrNW_004955513:5,017,971...5,019,489 JBrowse link
G Xrcc4 X-ray repair cross complementing 4 ISO (PMID:12517771) UniProtKB PMID:12517771 NCBI chrNW_004955418:27,174,510...27,426,245 JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad51 RAD51 recombinase ISO (PMID:26681308) UniProtKB PMID:26681308 NCBI chrNW_004955416:7,566,715...7,590,628 JBrowse link
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (MGI:MGI:2445645|PMID:12429860) MGI PMID:12429860 MGI:MGI:2445645 NCBI chrNW_004955559:712,375...730,551 JBrowse link
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chrNW_004955495:1,755,280...1,759,125 JBrowse link
G Hrob homologous recombination factor with OB-fold ISO (PMID:31467087) UniProt PMID:31467087 NCBI chrNW_004955451:17,256,593...17,264,872 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chrNW_004955509:5,007,385...5,319,683 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:1730053)
(PMID:24191025), (PMID:3335506)
UniProtKB
UniProt
PMID:1730053, PMID:3335506, PMID:24191025 NCBI chrNW_004955559:712,375...730,551 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chrNW_004955482:373,467...418,000 JBrowse link
G Polh DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004955437:9,392,484...9,409,186 JBrowse link
G Sirt1 sirtuin 1 ISO (MGI:MGI:5297784|PMID:17612497) UniProtKB PMID:17612497 MGI:MGI:5297784 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004955463:7,495,243...7,633,532 JBrowse link
G Wrnip1 WRN helicase interacting protein 1 ISO (PMID:15670210) UniProtKB PMID:15670210 NCBI chrNW_004955465:10,574,601...10,594,570 JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chrNW_004955509:5,007,385...5,319,683 JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:5562498|PMID:23993650) MGI PMID:23993650 MGI:MGI:5562498 NCBI chrNW_004955532:533,877...535,767 JBrowse link
double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17643121, PMID:19261748 NCBI chrNW_004955474:6,252,321...6,265,518 JBrowse link
G Actr5 actin related protein 5 ISO (PMID:19014934) UniProtKB PMID:19014934 NCBI chrNW_004955445:17,991,969...18,024,525 JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 ISO PMID:19282473
(MGI:MGI:3698695|PMID:17121854)
UniProt
UniProtKB
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chrNW_004955414:22,121,867...22,137,849 JBrowse link
G Aplf aprataxin and PNKP like factor ISO (PMID:17396150)
(MGI:MGI:4887518|PMID:21211721)
UniProtKB
MGI
PMID:17396150, PMID:21211721 MGI:MGI:4887518 NCBI chrNW_004955424:16,338,546...16,449,074 JBrowse link
G Aptx aprataxin ISO (PMID:17519253) UniProtKB PMID:17519253 NCBI chrNW_004955472:2,645,716...2,664,394 JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 ISO (PMID:19261746), (PMID:19261748), (PMID:19261749) UniProtKB PMID:19261746, PMID:19261748, PMID:19261749 NCBI chrNW_004955524:939,250...944,457 JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 ISO (PMID:19261748) UniProtKB PMID:19261748 NCBI chrNW_004955469:9,831,488...10,246,631 JBrowse link
G Brca1 BRCA1 DNA repair associated ISO (PMID:22186889)
(PMID:17525340), (PMID:17643121), (PMID:19261748)
(MGI:MGI:5545964|PMID:22186889)
CACAO
UniProtKB
PMID:17525340, PMID:17643121, PMID:19261748, PMID:22186889 MGI:MGI:5545964 NCBI chrNW_004955451:16,819,463...16,870,780 JBrowse link
G Brca2 BRCA2 DNA repair associated ISO (PMID:16845393)
(MGI:MGI:1100157|PMID:9398843)
(MGI:MGI:3714678|PMID:17476307)
UniProtKB
MGI
PMID:9398843, PMID:16845393, PMID:17476307 MGI:MGI:1100157, MGI:MGI:3714678 NCBI chrNW_004955431:13,449,287...13,526,878 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO (PMID:17525341), (PMID:19261746), (PMID:19261748) UniProtKB PMID:17525341, PMID:19261746, PMID:19261748 NCBI chrNW_004955594:551,407...613,772 JBrowse link
G Cdca5 cell division cycle associated 5 ISO (PMID:17349791) UniProtKB PMID:17349791 NCBI chrNW_004955422:20,114,565...20,129,679 JBrowse link
G Chek2 checkpoint kinase 2 ISO (PMID:18317453) UniProtKB PMID:18317453 NCBI chrNW_004955455:2,969,113...3,008,004 JBrowse link
G Dclre1c DNA cross-link repair 1C ISO (MGI:MGI:3514096|PMID:12615897) MGI PMID:12615897 MGI:MGI:3514096 NCBI chrNW_004955429:19,461,446...19,501,908 JBrowse link
G Ddx1 DEAD-box helicase 1 ISO (PMID:18710941) UniProtKB PMID:18710941 NCBI chrNW_004955487:9,085,950...9,117,599 JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L ISO (PMID:23230272) UniProtKB PMID:23230272 NCBI chrNW_004955427:21,806,170...21,812,701 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit NOT ISO (MGI:MGI:3770581|PMID:17912366)
(MGI:MGI:2153690|PMID:11707424)
(MGI:MGI:3047512|PMID:15199134)
MGI PMID:11707424, PMID:15199134, PMID:17912366 MGI:MGI:2153690, MGI:MGI:3047512, MGI:MGI:3770581 NCBI chrNW_004955555:2,393,510...2,430,180 JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 ISO (MGI:MGI:5493398|PMID:22614755) MGI PMID:22614755 MGI:MGI:5493398 NCBI chrNW_004955403:50,306,726...50,328,015 JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 ISO (PMID:26807646) UniProtKB PMID:26807646 NCBI chrNW_004955466:1,114,299...1,169,124 JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO (PMID:19234442) UniProtKB PMID:19234442 NCBI chrNW_004955444:8,336,071...8,655,041 JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 ISO (PMID:19234442) UniProtKB PMID:19234442 NCBI chrNW_004955452:7,148,762...7,273,886 JBrowse link
G Ggn gametogenetin ISO (MGI:MGI:5502508|PMID:23451117) MGI PMID:23451117 MGI:MGI:5502508 NCBI chrNW_004955468:1,039,531...1,044,513 JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:20687897) UniProtKB PMID:20687897 NCBI chrNW_004955416:7,870,521...8,020,862 JBrowse link
G Kat5 lysine acetyltransferase 5 ISO (PMID:10966108) UniProtKB PMID:10966108 NCBI chrNW_004955422:19,557,498...19,565,044 JBrowse link
G Lig3 DNA ligase 3 ISO (PMID:19589734) BHF-UCL PMID:19589734 NCBI chrNW_004955481:9,696,050...9,716,154 JBrowse link
G Lig4 DNA ligase 4 ISO (PMID:19589734), (PMID:9242410)
(MGI:MGI:3715270|PMID:17554302)
(MGI:MGI:3043875|PMID:15175260)
(MGI:MGI:2445902|PMID:12531011)
(MGI:MGI:2445902|PMID:12531011), (MGI:MGI:3043875|PMID:15175260)
BHF-UCL
MGI
PMID:9242410, PMID:12531011, PMID:15175260, PMID:17554302, PMID:19589734 MGI:MGI:2445902, MGI:MGI:3043875, MGI:MGI:3715270 NCBI chrNW_004955404:3,606,077...3,615,193 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO (PMID:15988022) UniProtKB PMID:15988022 NCBI chrNW_004955486:2,191,903...2,197,193 JBrowse link
G Marf1 meiosis regulator and mRNA stability factor 1 ISO (MGI:MGI:5461283|PMID:23090997) MGI PMID:23090997 MGI:MGI:5461283 NCBI chrNW_004955442:442,512...490,784 JBrowse link
G Meioc meiosis specific with coiled-coil domain ISO (MGI:MGI:5770021|PMID:26742488) UniProtKB PMID:26742488 MGI:MGI:5770021 NCBI chrNW_004955451:17,534,644...17,547,095 JBrowse link
G Msh2 mutS homolog 2 ISO (MGI:MGI:3770581|PMID:17912366) MGI PMID:17912366 MGI:MGI:3770581 NCBI chrNW_004955441:14,188,315...14,247,608 JBrowse link
G Mta1 metastasis associated 1 ISO (PMID:19805145)
(MGI:MGI:4366101|PMID:19805145)
UniProtKB PMID:19805145 MGI:MGI:4366101 NCBI chrNW_004955538:3,630,383...3,671,005 JBrowse link
G Nbn nibrin ISO (PMID:9590181) UniProtKB PMID:9590181 NCBI chrNW_004955417:6,840,916...6,880,479 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:23230272)
(MGI:MGI:4947917|PMID:21270334)
UniProtKB
MGI
PMID:21270334, PMID:23230272 MGI:MGI:4947917 NCBI chrNW_004955489:520,875...557,609 JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 ISO (PMID:21270334)
(MGI:MGI:4947917|PMID:21270334)
(PMID:21211721)
MGI PMID:21211721, PMID:21270334 MGI:MGI:4947917 NCBI chrNW_004955532:3,591,484...3,597,549 JBrowse link
G Parp9 poly(ADP-ribose) polymerase family member 9 ISO (PMID:23230272) UniProtKB PMID:23230272 NCBI chrNW_004955427:21,770,158...21,806,091 JBrowse link
G Polq DNA polymerase theta ISO (PMID:22135286) UniProtKB PMID:22135286 NCBI chrNW_004955427:20,779,332...20,895,094 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO (PMID:18710952)
(MGI:MGI:2450507|PMID:12604618)
(MGI:MGI:2155497|PMID:11751629)
BHF-UCL
MGI
PMID:11751629, PMID:12604618, PMID:18710952 MGI:MGI:2155497, MGI:MGI:2450507 NCBI chrNW_004955454:7,733,697...7,890,896 JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5288570|PMID:21743440) MGI PMID:21743440 MGI:MGI:5288570 NCBI chrNW_004955596:455,932...485,853 JBrowse link
G Rad50 RAD50 double strand break repair protein ISO (PMID:9590181) UniProtKB PMID:9590181 NCBI chrNW_004955408:3,953,801...4,035,494 JBrowse link
G Rad54l RAD54 like ISO (MGI:MGI:3043875|PMID:15175260) MGI PMID:15175260 MGI:MGI:3043875 NCBI chrNW_004955464:11,996,512...12,033,525 JBrowse link
G Rnf168 ring finger protein 168 ISO (PMID:19203578), (PMID:19203579), (PMID:22980979) UniProtKB PMID:19203578, PMID:19203579, PMID:22980979 NCBI chrNW_004955420:12,656,815...12,676,836 JBrowse link
G Rnf8 ring finger protein 8 ISO (PMID:18001824), (PMID:18001825), (PMID:22980979) UniProtKB PMID:18001824, PMID:18001825, PMID:22980979 NCBI chrNW_004955437:5,807,592...5,832,213 JBrowse link
G Setx senataxin ISO (PMID:17562789) UniProtKB PMID:17562789 NCBI chrNW_004955513:1,718,432...1,776,133 JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 ISO (PMID:12023295) UniProtKB PMID:12023295 NCBI chrNW_004955438:12,421,790...12,510,243 JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 ISO (PMID:21030584)
(PMID:19794497)
UniProtKB PMID:19794497, PMID:21030584 NCBI chrNW_004955483:2,375,213...2,385,354 JBrowse link
G Tnks1bp1 tankyrase 1 binding protein 1 ISO (PMID:25749521) BHF-UCL PMID:25749521 NCBI chrNW_004955511:2,359,581...2,378,389 JBrowse link
G Tp53 tumor protein p53 ISO (MGI:MGI:3770581|PMID:17912366) MGI PMID:17912366 MGI:MGI:3770581 NCBI chrNW_004955467:9,241,391...9,256,716 JBrowse link
G Trip13 thyroid hormone receptor interactor 13 ISO (MGI:MGI:4821667|PMID:20711356)
(MGI:MGI:3719060|PMID:17696610)
UniProtKB
MGI
PMID:17696610, PMID:20711356 MGI:MGI:3719060, MGI:MGI:4821667 NCBI chrNW_004955504:434,187...452,636 JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 ISO (PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17525341, PMID:17525342, PMID:17643121, PMID:19261748 NCBI chrNW_004955408:29,154,373...29,274,817 JBrowse link
G Vcp valosin containing protein ISO (PMID:10855792), (PMID:22120668) UniProtKB PMID:10855792, PMID:22120668 NCBI chrNW_004955472:1,111,649...1,124,076 JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:21639834) UniProtKB PMID:21639834 NCBI chrNW_004955463:7,495,243...7,633,532 JBrowse link
G Xrcc4 X-ray repair cross complementing 4 ISO (PMID:9242410)
(MGI:MGI:1913213|PMID:9875844), (MGI:MGI:2155497|PMID:11751629)
UniProtKB
MGI
PMID:9242410, PMID:9875844, PMID:11751629 MGI:MGI:1913213, MGI:MGI:2155497 NCBI chrNW_004955418:27,174,510...27,426,245 JBrowse link
G Xrcc5 X-ray repair cross complementing 5 ISO (PMID:19581589)
(MGI:MGI:2445902|PMID:12531011)
BHF-UCL
MGI
PMID:12531011, PMID:19581589 MGI:MGI:2445902 NCBI chrNW_004955453:16,967,453...17,054,634 JBrowse link
G Xrcc6 X-ray repair cross complementing 6 ISO (MGI:MGI:2155497|PMID:11751629) MGI PMID:11751629 MGI:MGI:2155497 NCBI chrNW_004955413:27,135,785...27,158,344 JBrowse link
double-strand break repair involved in meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting protein C-terminal helicase 1 ISO (MGI:MGI:5700253|PMID:26490168) MGI PMID:26490168 MGI:MGI:5700253 NCBI chrNW_004955451:2,705,834...2,820,610 JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chrNW_004955444:12,348,537...12,382,769 JBrowse link
G Spo11 SPO11 initiator of meiotic double stranded breaks ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chrNW_004955445:2,088,144...2,103,385 JBrowse link
double-strand break repair via alternative nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmces 5-hydroxymethylcytosine binding, ES cell specific ISO (MGI:MGI:6393148|PMID:31806351) UniProt PMID:31806351 MGI:MGI:6393148 NCBI chrNW_004955429:13,616,647...13,638,657 JBrowse link
G Lig3 DNA ligase 3 ISO (MGI:MGI:5014103|PMID:21655080)
(PMID:24837021)
BHF-UCL PMID:21655080, PMID:24837021 MGI:MGI:5014103 NCBI chrNW_004955481:9,696,050...9,716,154 JBrowse link
G Polq DNA polymerase theta ISO (PMID:25643323)
(MGI:MGI:5621198|PMID:25642960)
UniProtKB PMID:25642960, PMID:25643323 MGI:MGI:5621198 NCBI chrNW_004955427:20,779,332...20,895,094 JBrowse link
double-strand break repair via classical nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:29545921) UniProt PMID:29545921 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Lig4 DNA ligase 4 ISO (PMID:24837021) BHF-UCL PMID:24837021 NCBI chrNW_004955404:3,606,077...3,615,193 JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:22542840) UniProtKB PMID:22542840 NCBI chrNW_004955414:15,733,116...16,043,555 JBrowse link
G Xrcc6 X-ray repair cross complementing 6 ISO (PMID:24095731) BHF-UCL PMID:24095731 NCBI chrNW_004955413:27,135,785...27,158,344 JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7A ISO (MGI:MGI:5702356|PMID:26446488) UniProt PMID:26446488 MGI:MGI:5702356 NCBI chrNW_004955495:4,747,905...4,754,066 JBrowse link
double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 ISO (PMID:20613862) UniProtKB PMID:20613862 NCBI chrNW_004955415:14,665,450...14,669,456 JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 ISO (PMID:20613862) UniProtKB PMID:20613862 NCBI chrNW_004955460:10,997,554...11,009,435 JBrowse link
G Atm ATM serine/threonine kinase ISO (MGI:MGI:3836659|PMID:19061978) MGI PMID:19061978 MGI:MGI:3836659 NCBI chrNW_004955412:10,422,753...10,531,406 JBrowse link
G Aunip aurora kinase A and ninein interacting protein ISO (PMID:29042561) UniProtKB PMID:29042561 NCBI chrNW_004955452:5,323,345...5,336,589 JBrowse link
G Brca1 BRCA1 DNA repair associated ISO (PMID:17349954) HGNC PMID:17349954 NCBI chrNW_004955451:16,819,463...16,870,780 JBrowse link
G Brca2 BRCA2 DNA repair associated ISO (PMID:21719596)
(MGI:MGI:3511388|PMID:15485900)
(PMID:20729832)
UniProtKB
MGI
PMID:15485900, PMID:20729832, PMID:21719596 MGI:MGI:3511388 NCBI chrNW_004955431:13,449,287...13,526,878 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:14728600) UniProtKB PMID:14728600 NCBI chrNW_004955442:4,833,453...4,861,201 JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 ISO (PMID:26807646) UniProtKB PMID:26807646 NCBI chrNW_004955466:1,114,299...1,169,124 JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603015), (PMID:20603016) UniProtKB PMID:20603015, PMID:20603016 NCBI chrNW_004955416:29,722,280...29,757,960 JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease ISO (PMID:23166748) UniProtKB PMID:23166748 NCBI chrNW_004955469:552,850...590,792 JBrowse link
G Helq helicase, POLQ like ISO (PMID:19995904) UniProtKB PMID:19995904 NCBI chrNW_004955474:6,280,955...6,322,702 JBrowse link
G Hus1 HUS1 checkpoint clamp component ISO (MGI:MGI:3690191|PMID:16278671) UniProtKB PMID:16278671 MGI:MGI:3690191 NCBI chrNW_004955456:5,465,180...5,476,380 JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:18026119) UniProtKB PMID:18026119 NCBI chrNW_004955416:7,870,521...8,020,862 JBrowse link
G Kash5 KASH domain containing 5 ISO (MGI:MGI:5515826|PMID:24062341) MGI PMID:24062341 MGI:MGI:5515826 NCBI chrNW_004955559:1,416,844...1,438,451 JBrowse link
G Kdm4d lysine demethylase 4D ISO (PMID:24550317) MGI PMID:24550317 NCBI chrNW_004955605:7,585...32,650 JBrowse link
G LOC102025775 histone H2AX ISO (MGI:MGI:2179182|PMID:11934988) MGI PMID:11934988 MGI:MGI:2179182 NCBI chrNW_004955412:20,203,173...20,204,714 JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor ISO (PMID:23401855)
(MGI:MGI:5437561|PMID:22771120)
UniProt
UniProtKB
PMID:22771120, PMID:23401855 MGI:MGI:5437561 NCBI chrNW_004955415:16,345,472...16,379,922 JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor ISO (PMID:23401855)
(PMID:22771115)
(MGI:MGI:5437561|PMID:22771120), (MGI:MGI:5525985|PMID:23401855)
UniProt
UniProtKB
PMID:22771115, PMID:22771120, PMID:23401855 MGI:MGI:5437561, MGI:MGI:5525985 NCBI chrNW_004955436:1,642,337...1,661,362 JBrowse link
G Meiob meiosis specific with OB-fold ISO (MGI:MGI:5527015|PMID:24068956), (MGI:MGI:5538413|PMID:24240703) UniProtKB PMID:24068956, PMID:24240703 MGI:MGI:5527015, MGI:MGI:5538413 NCBI chrNW_004955442:15,409,344...15,444,996 JBrowse link
G Mms22l MMS22 like, DNA repair protein ISO (PMID:21055983), (PMID:21055984), (PMID:21055985) UniProtKB PMID:21055983, PMID:21055984, PMID:21055985 NCBI chrNW_004955411:23,125,203...23,245,941 JBrowse link
G Morf4l1 mortality factor 4 like 1 ISO (PMID:20332121) UniProtKB PMID:20332121 NCBI chrNW_004955533:14,770...28,290 JBrowse link
G Nabp1 nucleic acid binding protein 1 ISO (PMID:19605351) UniProtKB PMID:19605351 NCBI chrNW_004955403:7,603,002...7,610,925 JBrowse link
G Nabp2 nucleic acid binding protein 2 ISO (PMID:19605351) UniProtKB PMID:19605351 NCBI chrNW_004955458:3,835,205...3,836,841 JBrowse link
G Nsmce2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase ISO (PMID:16810316) UniProtKB PMID:16810316 NCBI chrNW_004955461:199,356...451,716 JBrowse link
G Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chrNW_004955406:41,412,855...41,448,551 JBrowse link
G Palb2 partner and localizer of BRCA2 ISO (PMID:26323318)
(PMID:19369211), (PMID:19423707)
ParkinsonsUK-UCL
UniProtKB
PMID:19369211, PMID:19423707, PMID:26323318 NCBI chrNW_004955493:2,149,053...2,175,482 JBrowse link
G Poll DNA polymerase lambda ISO (PMID:20693240) UniProtKB PMID:20693240 NCBI chrNW_004955485:8,691,886...8,700,681 JBrowse link
G Poln DNA polymerase nu ISO (PMID:19995904) UniProtKB PMID:19995904 NCBI chrNW_004955514:1,214,867...1,342,172 JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 ISO (PMID:22909820) UniProtKB PMID:22909820 NCBI chrNW_004955449:12,306,026...12,400,908 JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5428050|PMID:22711701) MGI PMID:22711701 MGI:MGI:5428050 NCBI chrNW_004955596:455,932...485,853 JBrowse link
G Rad51 RAD51 recombinase ISO (MGI:MGI:3511388|PMID:15485900)
(MGI:MGI:3525800|PMID:15359272)
(PMID:16428451)
(PMID:22778135), (PMID:23509288), (PMID:26681308)
MGI
RGD
BHF-UCL
PMID:14755242, PMID:15359272, PMID:15485900, PMID:16428451, PMID:22778135, PMID:23509288, PMID:26681308 MGI:MGI:3511388, MGI:MGI:3525800, RGD:9831188 NCBI chrNW_004955416:7,566,715...7,590,628 JBrowse link
G Rad51ap1 RAD51 associated protein 1 ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chrNW_004955413:2,335,431...2,362,781 JBrowse link
G Rad51b RAD51 paralog B ISO (PMID:23149936) UniProtKB PMID:23149936 NCBI chrNW_004955466:1,686,472...2,388,146 JBrowse link
G Rad51c RAD51 paralog C ISO (PMID:23149936) UniProtKB PMID:23149936 NCBI chrNW_004955451:4,053,195...4,178,226 JBrowse link
G Rad51d RAD51 paralog D ISO (PMID:23149936) UniProtKB PMID:23149936 NCBI chrNW_004955481:9,795,102...9,810,426 JBrowse link
G Rad52 RAD52 homolog, DNA repair protein ISO (MGI:MGI:2446961|PMID:12379650) MGI PMID:12379650 MGI:MGI:2446961 NCBI chrNW_004955454:6,206,195...6,227,859 JBrowse link
G Rad54b RAD54 homolog B ISO (PMID:16428451)
(MGI:MGI:3615835|PMID:16428451)
(MGI:MGI:3836659|PMID:19061978)
MGI PMID:16428451, PMID:19061978 MGI:MGI:3615835, MGI:MGI:3836659 NCBI chrNW_004955417:10,598,295...10,685,999 JBrowse link
G Rad54l RAD54 like ISO (MGI:MGI:3615835|PMID:16428451)
(MGI:MGI:3836659|PMID:19061978)
MGI PMID:16428451, PMID:19061978 MGI:MGI:3615835, MGI:MGI:3836659 NCBI chrNW_004955464:11,996,512...12,033,525 JBrowse link
G Rec8 REC8 meiotic recombination protein ISO (MGI:MGI:5428050|PMID:22711701) MGI PMID:22711701 MGI:MGI:5428050 NCBI chrNW_004955409:36,223,783...36,231,749 JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 ISO (PMID:26474068), (PMID:28575657), (PMID:28575658)
(PMID:28691929)
UniProtKB
UniProt
PMID:26474068, PMID:28575657, PMID:28575658, PMID:28691929 NCBI chrNW_004955484:2,824,057...2,857,321 JBrowse link
G Rnf138 ring finger protein 138 ISO (PMID:26502055), (PMID:26502057) UniProtKB PMID:26502055, PMID:26502057 NCBI chrNW_004955402:19,344,480...19,358,799 JBrowse link
G Rpa1 replication protein A1 ISO (PMID:17765923)
(MGI:MGI:3056835|PMID:15470499)
UniProtKB
MGI
PMID:15470499, PMID:17765923 MGI:MGI:3056835 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Rpa2 replication protein A2 ISO (PMID:17765923) UniProtKB PMID:17765923 NCBI chrNW_004955452:7,080,641...7,098,009 JBrowse link
G Rpa3 replication protein A3 ISO (PMID:17765923) UniProtKB PMID:17765923 NCBI chrNW_004955432:14,723,933...14,727,356 JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:28834754), (PMID:29670289) UniProtKB PMID:28834754, PMID:29670289 NCBI chrNW_004955422:24,714,103...24,780,672 JBrowse link
G Sem1 SEM1 26S proteasome complex subunit ISO (MGI:MGI:3525800|PMID:15359272) MGI PMID:15359272 MGI:MGI:3525800 NCBI chrNW_004955432:13,134,359...13,156,402 JBrowse link
G Sfpq splicing factor proline and glutamine rich ISO (PMID:20813759) MGI PMID:20813759 NCBI chrNW_004955452:13,267,968...13,283,823 JBrowse link
G Sfr1 SWI5 dependent homologous recombination repair protein 1 ISO (PMID:21252223)
(MGI:MGI:4868525|PMID:20976249)
UniProtKB PMID:20976249, PMID:21252223 MGI:MGI:4868525 NCBI chrNW_004955485:6,520,747...6,525,359 JBrowse link
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit ISO (PMID:19595721) UniProtKB PMID:19595721 NCBI chrNW_004955493:6,797,913...6,800,555 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit ISO (PMID:19595721), (PMID:19596235) UniProtKB PMID:19595721, PMID:19596235 NCBI chrNW_004955442:13,765,660...13,792,106 JBrowse link
G Smc5 structural maintenance of chromosomes 5 ISO (PMID:16810316) UniProtKB PMID:16810316 NCBI chrNW_004955434:2,742,276...2,848,384 JBrowse link
G Spidr scaffold protein involved in DNA repair ISO (PMID:23509288) UniProtKB PMID:23509288 NCBI chrNW_004955454:7,360,144...7,710,077 JBrowse link
G Swi5 SWI5 homologous recombination repair protein ISO (MGI:MGI:4868525|PMID:20976249)
(PMID:21252223)
UniProtKB PMID:20976249, PMID:21252223 MGI:MGI:4868525 NCBI chrNW_004955570:799,332...808,368 JBrowse link
G Swsap1 SWIM-type zinc finger 7 associated protein 1 ISO (PMID:21965664) UniProtKB PMID:21965664 NCBI chrNW_004955495:2,289,401...2,291,184 JBrowse link
G Tonsl tonsoku like, DNA repair protein ISO (PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:30773278) UniProt PMID:21055983, PMID:21055984, PMID:21055985, PMID:30773278 NCBI chrNW_004955454:3,054,727...3,067,785 JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N ISO (PMID:17349954) HGNC PMID:17349954 NCBI chrNW_004955405:30,240,402...30,278,362 JBrowse link
G Wdr48 WD repeat domain 48 ISO (MGI:MGI:5547894|PMID:24001775) MGI PMID:24001775 MGI:MGI:5547894 NCBI chrNW_004955427:24,873,616...24,917,691 JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO (PMID:23149936)
(MGI:MGI:3652689|PMID:16777961)
UniProtKB
MGI
PMID:16777961, PMID:23149936 MGI:MGI:3652689 NCBI chrNW_004955491:6,579,443...6,629,410 JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO (PMID:23149936) UniProtKB PMID:23149936 NCBI chrNW_004955538:2,499,297...2,511,898 JBrowse link
G Yy1 YY1 transcription factor ISO (PMID:18026119) UniProtKB PMID:18026119 NCBI chrNW_004955438:21,341,374...21,377,674 JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 ISO (PMID:20613862) UniProtKB PMID:20613862 NCBI chrNW_004955466:2,389,893...2,453,487 JBrowse link
G Zswim7 zinc finger SWIM-type containing 7 ISO (PMID:21965664) UniProtKB PMID:21965664 NCBI chrNW_004955467:1,364,044...1,381,101 JBrowse link
double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:14690602) BHF-UCL PMID:14690602 NCBI chrNW_004955555:2,393,510...2,430,180 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:14690602) BHF-UCL PMID:14690602 NCBI chrNW_004955442:4,833,453...4,861,201 JBrowse link
G Kdm2a lysine demethylase 2A ISO (PMID:21187428) UniProtKB PMID:21187428 NCBI chrNW_004955422:18,201,243...18,308,163 JBrowse link
G Lig1 DNA ligase 1 ISO (MGI:MGI:5014103|PMID:21655080) MGI PMID:21655080 MGI:MGI:5014103 NCBI chrNW_004955609:118,442...160,009 JBrowse link
G Lig3 DNA ligase 3 ISO (MGI:MGI:5014103|PMID:21655080) MGI PMID:21655080 MGI:MGI:5014103 NCBI chrNW_004955481:9,696,050...9,716,154 JBrowse link
G Lig4 DNA ligase 4 ISO (PMID:12517771)
(PMID:23275564)
(MGI:MGI:1859491|PMID:10823907)
(MGI:MGI:3652689|PMID:16777961)
(PMID:9809069)
(MGI:MGI:5705227|PMID:12361565)
UniProtKB
BHF-UCL
MGI
PMID:9809069, PMID:10823907, PMID:12361565, PMID:12517771, PMID:16777961, PMID:23275564 MGI:MGI:1859491, MGI:MGI:3652689, MGI:MGI:5705227 NCBI chrNW_004955404:3,606,077...3,615,193 JBrowse link
G LOC102020128 histone-lysine N-methyltransferase SETMAR ISO (PMID:16332963)
(PMID:18263876), (PMID:21187428), (PMID:24573677)
UniProtKB PMID:16332963, PMID:18263876, PMID:21187428, PMID:24573677 NCBI chrNW_004955421:9,066,906...9,080,352 JBrowse link
G Mlh1 mutL homolog 1 ISO (MGI:MGI:3039915|PMID:15084308) MGI PMID:15084308 MGI:MGI:3039915 NCBI chrNW_004955421:3,890,291...3,936,892 JBrowse link
G Nhej1 non-homologous end joining factor 1 ISO (PMID:16439204), (PMID:16439205) UniProtKB PMID:16439204, PMID:16439205 NCBI chrNW_004955453:14,278,773...14,362,167 JBrowse link
G Nsmce2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase NOT ISO (PMID:16810316) UniProtKB PMID:16810316 NCBI chrNW_004955461:199,356...451,716 JBrowse link
G Paxx PAXX non-homologous end joining factor ISO (PMID:25574025), (PMID:25670504), (PMID:25941166) UniProtKB PMID:25574025, PMID:25670504, PMID:25941166 NCBI chrNW_004955513:5,017,971...5,019,489 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chrNW_004955509:5,007,385...5,319,683 JBrowse link
G Poll DNA polymerase lambda ISO (PMID:19806195) UniProtKB PMID:19806195 NCBI chrNW_004955485:8,691,886...8,700,681 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO (MGI:MGI:5543316|PMID:23836881) MGI PMID:23836881 MGI:MGI:5543316 NCBI chrNW_004955454:7,733,697...7,890,896 JBrowse link
G Prpf19 pre-mRNA processing factor 19 ISO (PMID:18263876) UniProtKB PMID:18263876 NCBI chrNW_004955511:5,546,212...5,552,368 JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 ISO (PMID:22909820) UniProtKB PMID:22909820 NCBI chrNW_004955449:12,306,026...12,400,908 JBrowse link
G Rnf8 ring finger protein 8 ISO (MGI:MGI:5293246|PMID:21857671), (MGI:MGI:5465398|PMID:22266820) UniProtKB PMID:21857671, PMID:22266820 MGI:MGI:5293246, MGI:MGI:5465398 NCBI chrNW_004955437:5,807,592...5,832,213 JBrowse link
G Smarcal1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 ISO (PMID:26089390) CACAO PMID:26089390 NCBI chrNW_004955453:16,724,286...16,784,129 JBrowse link
G Smc5 structural maintenance of chromosomes 5 NOT ISO (PMID:16810316) UniProtKB PMID:16810316 NCBI chrNW_004955434:2,742,276...2,848,384 JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO (PMID:23333306), (PMID:23760478), (PMID:28241136)
(MGI:MGI:5476381|PMID:23333305)
(MGI:MGI:5887194|PMID:20362325)
UniProtKB PMID:20362325, PMID:23333305, PMID:23333306, PMID:23760478, PMID:28241136 MGI:MGI:5476381, MGI:MGI:5887194 NCBI chrNW_004955416:9,962,736...10,035,433 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO (MGI:MGI:3758502|PMID:14690602) BHF-UCL PMID:14690602 MGI:MGI:3758502 NCBI chrNW_004955555:1,293,416...1,315,839 JBrowse link
G Xrcc4 X-ray repair cross complementing 4 ISO (PMID:12517771)
(PMID:9809069)
(MGI:MGI:3761960|PMID:17713479)
(MGI:MGI:3758502|PMID:14690602)
UniProtKB
MGI
BHF-UCL
PMID:9809069, PMID:12517771, PMID:14690602, PMID:17713479 MGI:MGI:3758502, MGI:MGI:3761960 NCBI chrNW_004955418:27,174,510...27,426,245 JBrowse link
G Xrcc5 X-ray repair cross complementing 5 ISO (PMID:26359349)
(PMID:20383123)
UniProtKB PMID:20383123, PMID:26359349 NCBI chrNW_004955453:16,967,453...17,054,634 JBrowse link
G Xrcc6 X-ray repair cross complementing 6 ISO (PMID:20383123), (PMID:26359349)
(MGI:MGI:2155497|PMID:11751629)
UniProtKB
MGI
PMID:11751629, PMID:20383123, PMID:26359349 MGI:MGI:2155497 NCBI chrNW_004955413:27,135,785...27,158,344 JBrowse link
error-free postreplication DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ube2v1 ubiquitin conjugating enzyme E2 V1 ISO (MGI:MGI:2136126|PMID:11406273) MGI PMID:11406273 MGI:MGI:2136126 NCBI chrNW_004955445:8,142,882...8,174,199 JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO (MGI:MGI:2136126|PMID:11406273) MGI PMID:11406273 MGI:MGI:2136126 NCBI chrNW_004955454:7,951,876...7,998,686 JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025) UniProt PMID:24191025 NCBI chrNW_004955559:712,375...730,551 JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 ISO (PMID:24191025) UniProt PMID:24191025 NCBI chrNW_004955481:4,776,721...4,785,817 JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polk DNA polymerase kappa ISO (PMID:28297716) UniProtKB PMID:28297716 NCBI chrNW_004955425:25,164,749...25,228,064 JBrowse link
G Primpol primase and DNA directed polymerase ISO (PMID:24682820), (PMID:25746449), (PMID:28534480) UniProt PMID:24682820, PMID:25746449, PMID:28534480 NCBI chrNW_004955403:24,278,727...24,307,312 JBrowse link
G Rev1 REV1 DNA directed polymerase ISO (MGI:MGI:2157239|PMID:11711549) MGI PMID:11711549 MGI:MGI:2157239 NCBI chrNW_004955470:5,677,222...5,738,362 JBrowse link
interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dclre1b DNA cross-link repair 1B ISO (PMID:20479256) BHF-UCL PMID:20479256 NCBI chrNW_004955435:17,173,975...17,179,986 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:5506835|PMID:23637614) MGI PMID:23637614 MGI:MGI:5506835 NCBI chrNW_004955555:2,393,510...2,430,180 JBrowse link
G Ercc6l2 ERCC excision repair 6 like 2 ISO (PMID:24507776) UniProtKB PMID:24507776 NCBI chrNW_004955422:22,753,008...22,890,339 JBrowse link
G Exo5 exonuclease 5 ISO (PMID:23095756) UniProtKB PMID:23095756 NCBI chrNW_004955537:328,608...334,559 JBrowse link
G Faap20 FA core complex associated protein 20 ISO (PMID:22266823), (PMID:22396592), (PMID:22705371) UniProtKB PMID:22266823, PMID:22396592, PMID:22705371 NCBI chrNW_004955486:8,938,352...8,944,631 JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:25430771) UniProtKB PMID:25430771 NCBI chrNW_004955416:29,722,280...29,757,960 JBrowse link
G Hrob homologous recombination factor with OB-fold ISO (PMID:31467087) UniProt PMID:31467087 NCBI chrNW_004955451:17,256,593...17,264,872 JBrowse link
G Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chrNW_004955406:41,412,855...41,448,551 JBrowse link
G Poln DNA polymerase nu ISO (PMID:19908865), (PMID:19995904) UniProtKB PMID:19908865, PMID:19995904 NCBI chrNW_004955514:1,214,867...1,342,172 JBrowse link
G Rad51 RAD51 recombinase ISO (PMID:26253028) UniProtKB PMID:26253028 NCBI chrNW_004955416:7,566,715...7,590,628 JBrowse link
G Rad51ap1 RAD51 associated protein 1 ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chrNW_004955413:2,335,431...2,362,781 JBrowse link
G Rad51d RAD51 paralog D ISO (MGI:MGI:3574680|PMID:15781618) MGI PMID:15781618 MGI:MGI:3574680 NCBI chrNW_004955481:9,795,102...9,810,426 JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 ISO (PMID:28575657), (PMID:28575658) UniProtKB PMID:28575657, PMID:28575658 NCBI chrNW_004955484:2,824,057...2,857,321 JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chrNW_004955538:2,499,297...2,511,898 JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chrNW_004955444:12,348,537...12,382,769 JBrowse link
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting protein C-terminal helicase 1 ISO (MGI:MGI:5700253|PMID:26490168) MGI PMID:26490168 MGI:MGI:5700253 NCBI chrNW_004955451:2,705,834...2,820,610 JBrowse link
G CUNH14orf39 chromosome unknown C14orf39 homolog ISO (MGI:MGI:5822939|PMID:27796301) UniProtKB PMID:27796301 MGI:MGI:5822939 NCBI chrNW_004955466:9,158,022...9,194,088 JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 ISO (MGI:MGI:5314623|PMID:22011390) MGI PMID:22011390 MGI:MGI:5314623 NCBI chrNW_004955467:13,304,314...13,325,228 JBrowse link
G Sycp1 synaptonemal complex protein 1 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004955405:37,093,330...37,102,789 JBrowse link
G Tex12 testis expressed 12 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004955412:13,829,637...13,834,481 JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chrNW_004955444:12,348,537...12,382,769 JBrowse link
mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 ISO (PMID:14636568)
(PMID:9788596)
(PMID:11809771)
UniProtKB PMID:9788596, PMID:11809771, PMID:14636568 NCBI chrNW_004955406:10,248,981...10,276,207 JBrowse link
G Mlh1 mutL homolog 1 ISO (MGI:MGI:1354996|PMID:10747038)
(MGI:MGI:1203882|PMID:9560238), (MGI:MGI:1353727|PMID:10657972)
(PMID:23603115)
(MGI:MGI:1197799|PMID:9500552), (MGI:MGI:1339254|PMID:10359802), (MGI:MGI:1859717|PMID:10851078), (MGI:MGI:1933705|PMID:11313994), (MGI:MGI:3607956|PMID:16204034), (MGI:MGI:3691360|PMID:10429667), (MGI:MGI:3692242|PMID:16728433)
(MGI:MGI:1332740|PMID:10096563), (MGI:MGI:81371|PMID:8674118)
MGI PMID:8674118, PMID:9500552, PMID:9560238, PMID:10096563, PMID:10359802, PMID:10429667, PMID:10657972, PMID:10747038, PMID:10851078, PMID:11313994, PMID:16204034, PMID:16728433, PMID:23603115 MGI:MGI:1197799, MGI:MGI:1203882, MGI:MGI:1332740, MGI:MGI:1339254, MGI:MGI:1353727, MGI:MGI:1354996, MGI:MGI:1859717, MGI:MGI:1933705, MGI:MGI:3607956, MGI:MGI:3691360, MGI:MGI:3692242, MGI:MGI:81371 NCBI chrNW_004955421:3,890,291...3,936,892 JBrowse link
G Mlh3 mutL homolog 3 ISO (MGI:MGI:3607956|PMID:16204034) MGI PMID:16204034 MGI:MGI:3607956 NCBI chrNW_004955523:515,409...547,257 JBrowse link
G Msh2 mutS homolog 2 ISO (PMID:11555625), (PMID:7923193)
(PMID:23603115)
(MGI:MGI:3029112|PMID:14744764)
(MGI:MGI:3692242|PMID:16728433)
(MGI:MGI:2388857|PMID:12531017)
(MGI:MGI:1889760|PMID:10992298)
(MGI:MGI:1275866|PMID:9697842), (MGI:MGI:1350445|PMID:10581038), (MGI:MGI:3703647|PMID:17331550), (MGI:MGI:5464025|PMID:23071719), (MGI:MGI:74950|PMID:7628020)
(MGI:MGI:1096207|PMID:9288110), (MGI:MGI:1861016|PMID:10874005), (MGI:MGI:1926519|PMID:11046134), (MGI:MGI:2176101|PMID:11890935), (MGI:MGI:3692242|PMID:16728433), (MGI:MGI:82395|PMID:8706033)
(MGI:MGI:87767|PMID:9157971), (MGI:MGI:894568|PMID:9244348)
MGI PMID:7628020, PMID:7923193, PMID:8706033, PMID:9157971, PMID:9244348, PMID:9288110, PMID:9697842, PMID:10581038, PMID:10874005, PMID:10992298, PMID:11046134, PMID:11555625, PMID:11890935, PMID:12531017, PMID:14744764, PMID:16728433, PMID:17331550, PMID:23071719, PMID:23603115 MGI:MGI:1096207, MGI:MGI:1275866, MGI:MGI:1350445, MGI:MGI:1861016, MGI:MGI:1889760, MGI:MGI:1926519, MGI:MGI:2176101, MGI:MGI:2388857, MGI:MGI:3029112, MGI:MGI:3692242, MGI:MGI:3703647, MGI:MGI:5464025, MGI:MGI:74950, MGI:MGI:82395, MGI:MGI:87767, MGI:MGI:894568 NCBI chrNW_004955441:14,188,315...14,247,608 JBrowse link
G Msh3 mutS homolog 3 ISO (PMID:8782829)
(MGI:MGI:1353715|PMID:10706084), (MGI:MGI:3692242|PMID:16728433)
(MGI:MGI:3692242|PMID:16728433)
(MGI:MGI:2154151|PMID:11691815)
HGNC
MGI
PMID:8782829, PMID:10706084, PMID:11691815, PMID:16728433 MGI:MGI:1353715, MGI:MGI:2154151, MGI:MGI:3692242 NCBI chrNW_004955418:29,149,595...29,274,067 JBrowse link
G Msh6 mutS homolog 6 ISO (PMID:8782829)
(MGI:MGI:2154151|PMID:11691815)
(PMID:23603115)
(MGI:MGI:1100204|PMID:9390556), (MGI:MGI:2388851|PMID:12370835), (MGI:MGI:3692242|PMID:16728433)
(MGI:MGI:5464025|PMID:23071719)
(MGI:MGI:3053495|PMID:15324697)
(MGI:MGI:3692242|PMID:16728433)
(PMID:10871409), (PMID:23622243)
HGNC
MGI
PMID:8782829, PMID:9390556, PMID:10871409, PMID:11691815, PMID:12370835, PMID:15324697, PMID:16728433, PMID:23071719, PMID:23603115, PMID:23622243 MGI:MGI:1100204, MGI:MGI:2154151, MGI:MGI:2388851, MGI:MGI:3053495, MGI:MGI:3692242, MGI:MGI:5464025 NCBI chrNW_004955441:14,451,207...14,471,316 JBrowse link
G Pcna proliferating cell nuclear antigen ISO (PMID:11005803) BHF-UCL PMID:11005803 NCBI chrNW_004955415:15,744,601...15,748,910 JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO (MGI:MGI:1197799|PMID:9500552) MGI PMID:9500552 MGI:MGI:1197799 NCBI chrNW_004955403:9,021,488...9,100,442 JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO (PMID:10871409), (PMID:23709753)
(MGI:MGI:3607956|PMID:16204034)
(MGI:MGI:1933705|PMID:11313994)
(MGI:MGI:1197799|PMID:9500552), (MGI:MGI:1339254|PMID:10359802), (MGI:MGI:3607956|PMID:16204034), (MGI:MGI:3691360|PMID:10429667), (MGI:MGI:3692242|PMID:16728433), (MGI:MGI:5464025|PMID:23071719)
(PMID:9618520)
HGNC
MGI
CAFA
PMID:9500552, PMID:9618520, PMID:10359802, PMID:10429667, PMID:10871409, PMID:11313994, PMID:16204034, PMID:16728433, PMID:23071719, PMID:23709753 MGI:MGI:1197799, MGI:MGI:1339254, MGI:MGI:1933705, MGI:MGI:3607956, MGI:MGI:3691360, MGI:MGI:3692242, MGI:MGI:5464025 NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Rnaseh2a ribonuclease H2 subunit A ISO (PMID:23603115)
(MGI:MGI:5499950|PMID:23603115)
MGI PMID:23603115 MGI:MGI:5499950 NCBI chrNW_004955415:31,884,533...31,894,159 JBrowse link
G Rpa1 replication protein A1 ISO (PMID:9430682) UniProtKB PMID:9430682 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Rpa2 replication protein A2 ISO (PMID:9430682) UniProtKB PMID:9430682 NCBI chrNW_004955452:7,080,641...7,098,009 JBrowse link
G Rpa3 replication protein A3 ISO (PMID:9430682) UniProtKB PMID:9430682 NCBI chrNW_004955432:14,723,933...14,727,356 JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO (PMID:23622243) UniProtKB PMID:23622243 NCBI chrNW_004955420:25,070,626...25,178,410 JBrowse link
G Tdg thymine DNA glycosylase ISO (PMID:22573813) UniProtKB PMID:22573813 NCBI chrNW_004955405:38,661,687...38,680,138 JBrowse link
mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor ISO (MGI:MGI:5705200|PMID:26300262)
(PMID:26300262)
UniProt PMID:26300262 MGI:MGI:5705200 NCBI chrNW_004955436:1,642,337...1,661,362 JBrowse link
mitochondrial DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chchd4 coiled-coil-helix-coiled-coil-helix domain containing 4 ISO (MGI:MGI:5516376|PMID:24101517) MGI PMID:24101517 MGI:MGI:5516376 NCBI chrNW_004955429:16,911,392...16,921,353 JBrowse link
G Dna2 DNA replication helicase/nuclease 2 ISO (PMID:19487465) UniProtKB PMID:19487465 NCBI chrNW_004955425:20,664,412...20,705,070 JBrowse link
G Lig3 DNA ligase 3 ISO (PMID:21390132)
(MGI:MGI:4943977|PMID:21390132), (MGI:MGI:4943978|PMID:21390131)
BHF-UCL
MGI
PMID:21390131, PMID:21390132 MGI:MGI:4943977, MGI:MGI:4943978 NCBI chrNW_004955481:9,696,050...9,716,154 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:25378300) MGI PMID:25378300 NCBI chrNW_004955489:520,875...557,609 JBrowse link
G Primpol primase and DNA directed polymerase ISO (MGI:MGI:6393030|PMID:29073063) UniProt PMID:29073063 MGI:MGI:6393030 NCBI chrNW_004955403:24,278,727...24,307,312 JBrowse link
G Tp53 tumor protein p53 ISO (MGI:MGI:5516376|PMID:24101517) MGI PMID:24101517 MGI:MGI:5516376 NCBI chrNW_004955467:9,241,391...9,256,716 JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rps3 ribosomal protein S3 ISO (PMID:17049931) UniProtKB PMID:17049931 NCBI chrNW_004955414:16,436,899...16,442,325 JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO (PMID:20725033) UniProtKB PMID:20725033 NCBI chrNW_004955422:21,047,184...21,055,596 JBrowse link
G Rnf169 ring finger protein 169 ISO (PMID:22742833)
(PMID:22492721), (PMID:22733822)
UniProtKB PMID:22492721, PMID:22733822, PMID:22742833 NCBI chrNW_004955414:16,899,101...16,962,690 JBrowse link
G Trip12 thyroid hormone receptor interactor 12 ISO (PMID:22884692) UniProtKB PMID:22884692 NCBI chrNW_004955453:5,132,776...5,272,250 JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17690110) BHF-UCL PMID:17690110 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 ISO (PMID:22884692) UniProtKB PMID:22884692 NCBI chrNW_004955417:26,997,572...27,085,511 JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cgas cyclic GMP-AMP synthase ISO (PMID:30356214)
(MGI:MGI:6241455|PMID:30356214)
UniProt PMID:30356214 MGI:MGI:6241455 NCBI chrNW_004955493:8,593,104...8,607,297 JBrowse link
G Fancb FA complementation group B ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955519:3,337,138...3,364,963 JBrowse link
G Fbh1 F-box DNA helicase 1 ISO (PMID:19736316)
(MGI:MGI:5566975|PMID:24108124)
UniProtKB PMID:19736316, PMID:24108124 MGI:MGI:5566975 NCBI chrNW_004955421:22,535,777...22,579,965 JBrowse link
G Helb DNA helicase B ISO (PMID:26774285)
(MGI:MGI:5766842|PMID:26774285)
UniProtKB PMID:26774285 MGI:MGI:5766842 NCBI chrNW_004955458:12,929,345...12,971,059 JBrowse link
G Klhl15 kelch like family member 15 ISO (PMID:27561354) UniProtKB PMID:27561354 NCBI chrNW_004955509:4,377,975...4,439,287 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955486:2,191,903...2,197,193 JBrowse link
G Magef1 MAGE family member F1 ISO (PMID:29225034) UniProtKB PMID:29225034 NCBI chrNW_004955420:22,797,581...22,799,301 JBrowse link
G Parpbp PARP1 binding protein ISO (PMID:22153967) UniProtKB PMID:22153967 NCBI chrNW_004955405:37,297,816...37,357,191 JBrowse link
G Polq DNA polymerase theta ISO (PMID:25642963)
(MGI:MGI:5621198|PMID:25642960)
UniProtKB PMID:25642960, PMID:25642963 MGI:MGI:5621198 NCBI chrNW_004955427:20,779,332...20,895,094 JBrowse link
G Recql5 RecQ like helicase 5 ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955506:6,574,802...6,612,763 JBrowse link
G Rif1 replication timing regulatory factor 1 ISO (PMID:23333306)
(MGI:MGI:5468037|PMID:23306437), (MGI:MGI:5476381|PMID:23333305)
UniProtKB PMID:23306437, PMID:23333305, PMID:23333306 MGI:MGI:5468037, MGI:MGI:5476381 NCBI chrNW_004955440:16,977,710...17,047,809 JBrowse link
G Shld1 shieldin complex subunit 1 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955415:16,180,074...16,282,937 JBrowse link
G Shld2 shieldin complex subunit 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955510:6,021,477...6,114,745 JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chrNW_004955402:7,544,265...7,661,191 JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO (MGI:MGI:5887194|PMID:20362325)
(PMID:23333306), (PMID:23345425)
(MGI:MGI:5476381|PMID:23333305)
UniProtKB PMID:20362325, PMID:23333305, PMID:23333306, PMID:23345425 MGI:MGI:5476381, MGI:MGI:5887194 NCBI chrNW_004955416:9,962,736...10,035,433 JBrowse link
G Ubqln4 ubiquilin 4 ISO (PMID:30612738) UniProt PMID:30612738 NCBI chrNW_004955545:2,218,794...2,236,665 JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aunip aurora kinase A and ninein interacting protein ISO (PMID:29042561) UniProtKB PMID:29042561 NCBI chrNW_004955452:5,323,345...5,336,589 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:25820262) UniProt PMID:25820262 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:19549901) UniProtKB PMID:19549901 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Hsf1 heat shock transcription factor 1 ISO (PMID:26359349) UniProtKB PMID:26359349 NCBI chrNW_004955454:2,907,265...2,932,352 JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 ISO (PMID:28241136) UniProtKB PMID:28241136 NCBI chrNW_004955442:12,761,962...12,777,549 JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ogg1 8-oxoguanine DNA glycosylase ISO (PMID:19506022) MGI PMID:19506022 NCBI chrNW_004955561:1,277,362...1,282,949 JBrowse link
non-recombinational repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rexo4 REX4 homolog, 3'-5' exonuclease ISO (PMID:21602889) ARUK-UCL PMID:21602889 NCBI chrNW_004955513:2,745,220...2,754,927 JBrowse link
nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2 DNA repair associated ISO (PMID:16845393) UniProtKB PMID:16845393 NCBI chrNW_004955431:13,449,287...13,526,878 JBrowse link
G Cetn2 centrin 2 ISO (PMID:15964821) UniProtKB PMID:15964821 NCBI chrNW_004955498:8,131,356...8,135,751 JBrowse link
G Commd1 copper metabolism domain containing 1 ISO (PMID:23144634) CACAO PMID:23144634 NCBI chrNW_004955424:21,962,837...22,067,745 JBrowse link
G Dclre1a DNA cross-link repair 1A ISO (MGI:MGI:1859725|PMID:10848582) MGI PMID:10848582 MGI:MGI:1859725 NCBI chrNW_004955431:18,812,951...18,831,744 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:3290851)
(MGI:MGI:63544|PMID:8275084)
(PMID:11707424)
MGI PMID:3290851, PMID:8275084, PMID:11707424 MGI:MGI:63544 NCBI chrNW_004955555:2,393,510...2,430,180 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (MGI:MGI:1267106|PMID:9651581), (MGI:MGI:2179786|PMID:11950998)
(PMID:2835663)
MGI PMID:2835663, PMID:9651581, PMID:11950998 MGI:MGI:1267106, MGI:MGI:2179786 NCBI chrNW_004955555:2,355,005...2,369,599 JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:17509950) UniProtKB PMID:17509950 NCBI chrNW_004955459:3,210,936...3,238,401 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:8797827)
(PMID:10644440)
UniProtKB
MGI
PMID:8797827, PMID:10644440 NCBI chrNW_004955442:4,833,453...4,861,201 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO (PMID:11259578)
(MGI:MGI:1333374|PMID:10022922)
UniProt
MGI
PMID:10022922, PMID:11259578 MGI:MGI:1333374 NCBI chrNW_004955404:8,294,506...8,321,505 JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603016) UniProtKB PMID:20603016 NCBI chrNW_004955416:29,722,280...29,757,960 JBrowse link
G Fancc FA complementation group C ISO (MGI:MGI:1355066|PMID:8704201) MGI PMID:8704201 MGI:MGI:1355066 NCBI chrNW_004955422:22,031,825...22,246,478 JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 ISO (PMID:23637614)
(MGI:MGI:5506835|PMID:23637614)
MGI PMID:23637614 MGI:MGI:5506835 NCBI chrNW_004955439:4,226,530...4,234,390 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1508673) UniProtKB PMID:1508673 NCBI chrNW_004955509:5,007,385...5,319,683 JBrowse link
G Poll DNA polymerase lambda ISO (PMID:10982892) UniProtKB PMID:10982892 NCBI chrNW_004955485:8,691,886...8,700,681 JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein ISO (PMID:9372924) UniProtKB PMID:9372924 NCBI chrNW_004955415:31,991,478...31,997,277 JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein ISO (PMID:8168482), (PMID:9734359) UniProtKB PMID:8168482, PMID:9734359 NCBI chrNW_004955419:19,428,415...19,473,181 JBrowse link
G Rad51d RAD51 paralog D NOT ISO (MGI:MGI:4430476|PMID:19327148) MGI PMID:19327148 MGI:MGI:4430476 NCBI chrNW_004955481:9,795,102...9,810,426 JBrowse link
G Rpa1 replication protein A1 ISO (PMID:9430682) UniProtKB PMID:9430682 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Rpa2 replication protein A2 ISO (PMID:9430682) UniProtKB PMID:9430682 NCBI chrNW_004955452:7,080,641...7,098,009 JBrowse link
G Rpa3 replication protein A3 ISO (PMID:9430682) UniProtKB PMID:9430682 NCBI chrNW_004955432:14,723,933...14,727,356 JBrowse link
G Rpa4 replication protein A4 ISO (PMID:19996105) UniProtKB PMID:19996105 NCBI chrNW_004955503:2,514,460...2,516,973 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit ISO (PMID:19596236) UniProtKB PMID:19596236 NCBI chrNW_004955442:13,765,660...13,792,106 JBrowse link
G Tp53 tumor protein p53 ISO (PMID:7663514) UniProtKB PMID:7663514 NCBI chrNW_004955467:9,241,391...9,256,716 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (MGI:MGI:2179786|PMID:11950998), (MGI:MGI:2448221|PMID:12509265) MGI PMID:11950998, PMID:12509265 MGI:MGI:2179786, MGI:MGI:2448221 NCBI chrNW_004955419:27,751,042...27,774,917 JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (PMID:11259578), (PMID:8168482), (PMID:9734359)
(MGI:MGI:4365898|PMID:19615386)
(MGI:MGI:86029|PMID:9067411)
(MGI:MGI:2667287|PMID:12815074), (MGI:MGI:5427285|PMID:22431748)
UniProt
MGI
PMID:8168482, PMID:9067411, PMID:9734359, PMID:11259578, PMID:12815074, PMID:19615386, PMID:22431748 MGI:MGI:2667287, MGI:MGI:4365898, MGI:MGI:5427285, MGI:MGI:86029 NCBI chrNW_004955429:16,935,901...16,968,285 JBrowse link
nucleotide-excision repair, DNA damage recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad23b RAD23 homolog B, nucleotide excision repair protein ISO (PMID:19941824) UniProtKB PMID:19941824 NCBI chrNW_004955419:19,428,415...19,473,181 JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (PMID:10873465), (PMID:19941824) UniProtKB PMID:10873465, PMID:19941824 NCBI chrNW_004955429:16,935,901...16,968,285 JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:17466626) UniProtKB PMID:17466626 NCBI chrNW_004955459:3,210,936...3,238,401 JBrowse link
nucleotide-excision repair, DNA gap filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 ISO (PMID:12517771) UniProtKB PMID:12517771 NCBI chrNW_004955404:3,606,077...3,615,193 JBrowse link
G Polb DNA polymerase beta NOT ISO (PMID:20227374) UniProtKB PMID:20227374 NCBI chrNW_004955536:542,179...595,198 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:20227374) UniProtKB PMID:20227374 NCBI chrNW_004955559:712,375...730,551 JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit ISO (PMID:20227374) UniProtKB PMID:20227374 NCBI chrNW_004955414:17,064,379...17,111,946 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO (PMID:20227374) UniProtKB PMID:20227374 NCBI chrNW_004955482:373,467...418,000 JBrowse link
G Polk DNA polymerase kappa ISO (PMID:20227374) UniProtKB PMID:20227374 NCBI chrNW_004955425:25,164,749...25,228,064 JBrowse link
nucleotide-excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (PMID:8692841) UniProtKB PMID:8692841 NCBI chrNW_004955555:2,355,005...2,369,599 JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:17466626), (PMID:8692841) UniProtKB PMID:8692841, PMID:17466626 NCBI chrNW_004955459:3,210,936...3,238,401 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:10413517) UniProtKB PMID:10413517 NCBI chrNW_004955442:4,833,453...4,861,201 JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603016)
(PMID:20603015), (PMID:25430771)
UniProtKB PMID:20603015, PMID:20603016, PMID:25430771 NCBI chrNW_004955416:29,722,280...29,757,960 JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase ISO (PMID:19506022) MGI PMID:19506022 NCBI chrNW_004955561:1,277,362...1,282,949 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (PMID:21148310) CACAO PMID:21148310 NCBI chrNW_004955419:27,751,042...27,774,917 JBrowse link
nucleotide-excision repair, DNA incision, 3'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:7657672) UniProtKB PMID:7657672 NCBI chrNW_004955555:2,393,510...2,430,180 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:11790111) UniProtKB PMID:11790111 NCBI chrNW_004955442:4,833,453...4,861,201 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO (PMID:7657672)
(PMID:8090225)
UniProtKB PMID:7657672, PMID:8090225 NCBI chrNW_004955404:8,294,506...8,321,505 JBrowse link
nucleotide-excision repair, DNA incision, 5'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:7657672) UniProtKB PMID:7657672 NCBI chrNW_004955555:2,393,510...2,430,180 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:11790111), (PMID:14728600) UniProtKB PMID:11790111, PMID:14728600 NCBI chrNW_004955442:4,833,453...4,861,201 JBrowse link
G Nthl1 nth like DNA glycosylase 1 ISO (MGI:MGI:1289919|PMID:9743625)
(PMID:8990169)
UniProtKB PMID:8990169, PMID:9743625 MGI:MGI:1289919 NCBI chrNW_004955442:15,210,799...15,223,272 JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h5 general transcription factor IIH subunit 5 ISO (MGI:MGI:5506835|PMID:23637614) MGI PMID:23637614 MGI:MGI:5506835 NCBI chrNW_004955439:4,226,530...4,234,390 JBrowse link
photoreactive repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cry2 cryptochrome circadian regulator 2 NOT ISO (PMID:12627958) UniProtKB PMID:12627958 NCBI chrNW_004955422:2,084,020...2,114,980 JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam168a family with sequence similarity 168 member A ISO (PMID:25260657) UniProtKB PMID:25260657 NCBI chrNW_004955414:17,877,179...18,071,977 JBrowse link
G Rps3 ribosomal protein S3 ISO (PMID:18973764) UniProtKB PMID:18973764 NCBI chrNW_004955414:16,436,899...16,442,325 JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17643121, PMID:19261748 NCBI chrNW_004955474:6,252,321...6,265,518 JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 ISO PMID:19282473
(MGI:MGI:3698695|PMID:17121854)
UniProt
UniProtKB
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chrNW_004955414:22,121,867...22,137,849 JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 ISO (PMID:19261746), (PMID:19261748), (PMID:19261749) UniProtKB PMID:19261746, PMID:19261748, PMID:19261749 NCBI chrNW_004955524:939,250...944,457 JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 ISO (PMID:19261748) UniProtKB PMID:19261748 NCBI chrNW_004955469:9,831,488...10,246,631 JBrowse link
G Brca1 BRCA1 DNA repair associated ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17643121, PMID:19261748 NCBI chrNW_004955451:16,819,463...16,870,780 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO (PMID:17525341), (PMID:19261746), (PMID:19261748) UniProtKB PMID:17525341, PMID:19261746, PMID:19261748 NCBI chrNW_004955594:551,407...613,772 JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chrNW_004955506:3,035,510...3,038,204 JBrowse link
G Cebpg CCAAT enhancer binding protein gamma ISO (PMID:16255782) UniProtKB PMID:16255782 NCBI chrNW_004955468:3,137,106...3,141,733 JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:24049074) UniProtKB PMID:24049074 NCBI chrNW_004955406:21,697,813...21,743,551 JBrowse link
G Egfr epidermal growth factor receptor ISO (PMID:17115032) UniProtKB PMID:17115032 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:22483866) UniProt PMID:22483866 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO (PMID:19234442) UniProtKB PMID:19234442 NCBI chrNW_004955444:8,336,071...8,655,041 JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 ISO (PMID:19234442) UniProtKB PMID:19234442 NCBI chrNW_004955452:7,148,762...7,273,886 JBrowse link
G Fgf10 fibroblast growth factor 10 ISO (PMID:14975937) UniProtKB PMID:14975937 NCBI chrNW_004955446:18,163,117...18,244,840 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chrNW_004955477:7,103,035...7,375,073 JBrowse link
G Npas2 neuronal PAS domain protein 2 ISO (PMID:18819933) UniProtKB PMID:18819933 NCBI chrNW_004955470:6,826,541...6,906,814 JBrowse link
G Parg poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chrNW_004955556:435,264...539,935 JBrowse link
G Pcna proliferating cell nuclear antigen ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chrNW_004955415:15,744,601...15,748,910 JBrowse link
G Rnf168 ring finger protein 168 ISO (PMID:19203578), (PMID:19203579)
(PMID:23760478)
UniProtKB PMID:19203578, PMID:19203579, PMID:23760478 NCBI chrNW_004955420:12,656,815...12,676,836 JBrowse link
G Rnf8 ring finger protein 8 ISO (PMID:18001824), (PMID:18001825) UniProtKB PMID:18001824, PMID:18001825 NCBI chrNW_004955437:5,807,592...5,832,213 JBrowse link
G Rps3 ribosomal protein S3 ISO (PMID:23911537) UniProtKB PMID:23911537 NCBI chrNW_004955414:16,436,899...16,442,325 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:19934257) UniProtKB PMID:19934257 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:24790221) UniProtKB PMID:24790221 NCBI chrNW_004955402:7,544,265...7,661,191 JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase ISO (PMID:25928429) UniProtKB PMID:25928429 NCBI chrNW_004955413:2,129,719...2,153,873 JBrowse link
G Tmem161a transmembrane protein 161A ISO (PMID:16551573) BHF-UCL PMID:16551573 NCBI chrNW_004955524:2,667,089...2,674,550 JBrowse link
G Trim28 tripartite motif containing 28 ISO (PMID:17178852) UniProtKB PMID:17178852 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N ISO (PMID:16129784) HGNC PMID:16129784 NCBI chrNW_004955405:30,240,402...30,278,362 JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004955454:7,951,876...7,998,686 JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 ISO (PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17525341, PMID:17525342, PMID:17643121, PMID:19261748 NCBI chrNW_004955408:29,154,373...29,274,817 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
positive regulation of DNA repair by transcription from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2i general transcription factor IIi ISO (PMID:9334314) ARUK-UCL PMID:9334314 NCBI chrNW_004955456:13,371,306...13,461,846 JBrowse link
G Prrx1 paired related homeobox 1 ISO (PMID:9334314) ARUK-UCL PMID:9334314 NCBI chrNW_004955462:6,919,905...6,991,733 JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 ISO (PMID:23797032) UniProtKB PMID:23797032 NCBI chrNW_004955524:1,932,988...1,957,231 JBrowse link
G Fmn2 formin 2 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chrNW_004955406:11,358,585...11,666,102 JBrowse link
G Foxm1 forkhead box M1 ISO (MGI:MGI:3698692|PMID:17101782)
(PMID:17101782)
UniProtKB PMID:17101782 MGI:MGI:3698692 NCBI chrNW_004955429:18,392,545...18,405,254 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chrNW_004955477:7,103,035...7,375,073 JBrowse link
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) UniProtKB PMID:20385596 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 ISO (PMID:25931565) UniProtKB PMID:25931565 NCBI chrNW_004955418:17,756,610...17,818,552 JBrowse link
G Slf2 SMC5-SMC6 complex localization factor 2 ISO (PMID:25931565) UniProtKB PMID:25931565 NCBI chrNW_004955485:9,221,419...9,269,308 JBrowse link
G Spidr scaffold protein involved in DNA repair ISO (PMID:23509288) UniProtKB PMID:23509288 NCBI chrNW_004955454:7,360,144...7,710,077 JBrowse link
G Spire1 spire type actin nucleation factor 1 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chrNW_004955402:920,730...1,011,339 JBrowse link
G Spire2 spire type actin nucleation factor 2 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chrNW_004955541:3,341,705...3,359,646 JBrowse link
G Timeless timeless circadian regulator ISO (PMID:23797032) UniProtKB PMID:23797032 NCBI chrNW_004955458:3,999,143...4,029,523 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 ISO (PMID:27715493) UniProtKB PMID:27715493 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 ISO (MGI:MGI:6358520|PMID:31453335) ARUK-UCL PMID:31453335 MGI:MGI:6358520 NCBI chrNW_004955573:531,277...552,703 JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004955424:19,293,949...19,333,170 JBrowse link
G Arid2 AT-rich interaction domain 2 ISO (PMID:28381560) CACAO PMID:28381560 NCBI chrNW_004955500:4,998,555...5,177,180 JBrowse link
G Blm BLM RecQ like helicase ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955416:14,814,753...14,899,865 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:25820262) UniProt PMID:25820262 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Fancb FA complementation group B ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955519:3,337,138...3,364,963 JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component ISO (PMID:29225034) UniProtKB PMID:29225034 NCBI chrNW_004955507:3,593,413...3,623,781 JBrowse link
G Mrnip MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chrNW_004955408:726,124...758,851 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098, PMID:30356214 NCBI chrNW_004955489:520,875...557,609 JBrowse link
G Timeless timeless circadian regulator ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098, PMID:30356214 NCBI chrNW_004955458:3,999,143...4,029,523 JBrowse link
G Was WASP actin nucleation promoting factor ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004955543:243,618...253,489 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtx3l deltex E3 ubiquitin ligase 3L ISO (PMID:28525742) UniProtKB PMID:28525742 NCBI chrNW_004955427:21,806,170...21,812,701 JBrowse link
G Fh fumarate hydratase ISO (PMID:26237645) UniProt PMID:26237645 NCBI chrNW_004955406:10,535,801...10,558,649 JBrowse link
G Kdm4d lysine demethylase 4D ISO (PMID:24550317) MGI PMID:24550317 NCBI chrNW_004955605:7,585...32,650 JBrowse link
G Kmt5b lysine methyltransferase 5B ISO (PMID:28114273) UniProt PMID:28114273 NCBI chrNW_004955422:17,626,606...17,684,890 JBrowse link
G Kmt5c lysine methyltransferase 5C ISO (PMID:28114273) UniProt PMID:28114273 NCBI chrNW_004955567:895,334...901,240 JBrowse link
G LOC102020128 histone-lysine N-methyltransferase SETMAR ISO (PMID:20620605), (PMID:21491884) UniProtKB PMID:20620605, PMID:21491884 NCBI chrNW_004955421:9,066,906...9,080,352 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955486:2,191,903...2,197,193 JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 ISO (PMID:24598253) UniProt PMID:24598253 NCBI chrNW_004955532:3,591,484...3,597,549 JBrowse link
G Parp9 poly(ADP-ribose) polymerase family member 9 ISO (PMID:28525742) UniProtKB PMID:28525742 NCBI chrNW_004955427:21,770,158...21,806,091 JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase ISO (PMID:12032095) CACAO PMID:12032095 NCBI chrNW_004955559:1,064,924...1,070,120 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO (PMID:26237645) UniProt PMID:26237645 NCBI chrNW_004955454:7,733,697...7,890,896 JBrowse link
G Rif1 replication timing regulatory factor 1 ISO (MGI:MGI:5468037|PMID:23306437), (MGI:MGI:5476381|PMID:23333305)
(PMID:28241136)
UniProtKB PMID:23306437, PMID:23333305, PMID:28241136 MGI:MGI:5468037, MGI:MGI:5476381 NCBI chrNW_004955440:16,977,710...17,047,809 JBrowse link
G Shld1 shieldin complex subunit 1 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955415:16,180,074...16,282,937 JBrowse link
G Shld2 shieldin complex subunit 2 ISO (PMID:29656893), (PMID:29789392) UniProtKB PMID:29656893, PMID:29789392 NCBI chrNW_004955510:6,021,477...6,114,745 JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chrNW_004955402:7,544,265...7,661,191 JBrowse link
G Top2b DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chrNW_004955430:17,457,603...17,523,115 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 ISO (PMID:26221039) UniProt PMID:26221039 NCBI chrNW_004955413:33,272,600...33,277,893 JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:15014079) UniProtKB PMID:15014079 NCBI chrNW_004955431:15,373,207...15,377,339 JBrowse link
G Prkcg protein kinase C gamma ISO (PMID:15808853) HGNC PMID:15808853 NCBI chrNW_004955604:262,182...279,259 JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:28002403)
(MGI:MGI:5902647|PMID:28002403)
UniProtKB PMID:28002403 MGI:MGI:5902647 NCBI chrNW_004955489:520,875...557,609 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO (PMID:28002403)
(MGI:MGI:5902647|PMID:28002403)
UniProtKB PMID:28002403 MGI:MGI:5902647 NCBI chrNW_004955555:1,293,416...1,315,839 JBrowse link
postreplication repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1 DNA repair associated ISO (PMID:17349954) HGNC PMID:17349954 NCBI chrNW_004955451:16,819,463...16,870,780 JBrowse link
G Msh2 mutS homolog 2 ISO (PMID:7923193)
(MGI:MGI:74950|PMID:7628020)
UniProtKB
MGI
PMID:7628020, PMID:7923193 MGI:MGI:74950 NCBI chrNW_004955441:14,188,315...14,247,608 JBrowse link
G Polh DNA polymerase eta ISO (MGI:MGI:1860718|PMID:10871396) MGI PMID:10871396 MGI:MGI:1860718 NCBI chrNW_004955437:9,392,484...9,409,186 JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B ISO (PMID:14981545) UniProtKB PMID:14981545 NCBI chrNW_004955408:5,552,619...5,572,145 JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N ISO (PMID:17349954) HGNC PMID:17349954 NCBI chrNW_004955405:30,240,402...30,278,362 JBrowse link
pyrimidine dimer repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddb2 damage specific DNA binding protein 2 ISO (MGI:MGI:3526648|PMID:15558025) MGI PMID:15558025 MGI:MGI:3526648 NCBI chrNW_004955422:961,602...977,066 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (MGI:MGI:87553|PMID:9150142) MGI PMID:9150142 MGI:MGI:87553 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Polb DNA polymerase beta ISO RGD PMID:12388548 RGD:633643 NCBI chrNW_004955536:542,179...595,198 JBrowse link
G Polh DNA polymerase eta ISO (MGI:MGI:1860718|PMID:10871396) MGI PMID:10871396 MGI:MGI:1860718 NCBI chrNW_004955437:9,392,484...9,409,186 JBrowse link
pyrimidine dimer repair by nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:1342943|PMID:10454634) MGI PMID:10454634 MGI:MGI:1342943 NCBI chrNW_004955555:2,393,510...2,430,180 JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO (MGI:MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:MGI:3590574 NCBI chrNW_004955407:38,136,386...38,142,587 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:21149730)
(MGI:MGI:5298332|PMID:21149730)
UniProtKB PMID:21149730 MGI:MGI:5298332 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:MGI:3697767|PMID:17049932) MGI PMID:17049932 MGI:MGI:3697767 NCBI chrNW_004955429:16,935,901...16,968,285 JBrowse link
recombinational interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor ISO (PMID:23401855) UniProt PMID:23401855 NCBI chrNW_004955415:16,345,472...16,379,922 JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor ISO (PMID:23401855)
(MGI:MGI:5525985|PMID:23401855)
UniProt PMID:23401855 MGI:MGI:5525985 NCBI chrNW_004955436:1,642,337...1,661,362 JBrowse link
recombinational repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 ISO (PMID:21659603) UniProtKB PMID:21659603 NCBI chrNW_004955429:18,408,121...18,415,832 JBrowse link
regulation of DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helb DNA helicase B ISO (PMID:26774285)
(MGI:MGI:5766842|PMID:26774285)
UniProtKB PMID:26774285 MGI:MGI:5766842 NCBI chrNW_004955458:12,929,345...12,971,059 JBrowse link
regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk9 cyclin dependent kinase 9 ISO (PMID:20493174) UniProtKB PMID:20493174 NCBI chrNW_004955419:874,959...883,160 JBrowse link
G Ier3 immediate early response 3 ISO (MGI:MGI:5432078|PMID:20467439) MGI PMID:20467439 MGI:MGI:5432078 NCBI chrNW_004955583:730,353...731,301 JBrowse link
G Sirt7 sirtuin 7 ISO (PMID:27436229), (PMID:30944854) UniProt PMID:27436229, PMID:30944854 NCBI chrNW_004955506:1,252,271...1,258,728 JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (MGI:MGI:5913114|PMID:23695662) MGI PMID:23695662 MGI:MGI:5913114 NCBI chrNW_004955543:258,479...271,128 JBrowse link
G Usp1 ubiquitin specific peptidase 1 ISO (PMID:18082604) UniProtKB PMID:18082604 NCBI chrNW_004955423:27,236,242...27,254,064 JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dek DEK proto-oncogene ISO (PMID:21653549) MGI PMID:21653549 NCBI chrNW_004955408:28,470,207...28,472,083 JBrowse link
G Pml PML nuclear body scaffold ISO (PMID:21639834) UniProtKB PMID:21639834 NCBI chrNW_004955450:3,654,854...3,692,057 JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 ISO (PMID:15665856) UniProtKB PMID:15665856 NCBI chrNW_004955412:26,627,606...26,650,554 JBrowse link
G Fignl1 fidgetin like 1 ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chrNW_004955456:3,588,190...3,594,559 JBrowse link
G Kdm1a lysine demethylase 1A ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955452:3,044,042...3,104,650 JBrowse link
G Ppp4c protein phosphatase 4 catalytic subunit ISO (PMID:20154705) UniProtKB PMID:20154705 NCBI chrNW_004955493:6,894,849...6,901,344 JBrowse link
G Ppp4r2 protein phosphatase 4 regulatory subunit 2 ISO (PMID:20154705) UniProtKB PMID:20154705 NCBI chrNW_004955421:15,165,836...15,220,509 JBrowse link
G Rad51 RAD51 recombinase ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chrNW_004955416:7,566,715...7,590,628 JBrowse link
G Rad51ap1 RAD51 associated protein 1 ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chrNW_004955413:2,335,431...2,362,781 JBrowse link
G Rpa2 replication protein A2 ISO (PMID:20154705) UniProtKB PMID:20154705 NCBI chrNW_004955452:7,080,641...7,098,009 JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 ISO (PMID:18957201) UniProtKB PMID:18957201 NCBI chrNW_004955528:531,680...578,003 JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO (PMID:24843002) UniProtKB PMID:24843002 NCBI chrNW_004955420:25,070,626...25,178,410 JBrowse link
G Sirt6 sirtuin 6 ISO (PMID:19135889) UniProtKB PMID:19135889 NCBI chrNW_004955495:4,641,883...4,650,518 JBrowse link
G Spidr scaffold protein involved in DNA repair ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chrNW_004955454:7,360,144...7,710,077 JBrowse link
G Terf2ip TERF2 interacting protein ISO (MGI:MGI:4440768|PMID:20339076) UniProtKB PMID:20339076 MGI:MGI:4440768 NCBI chrNW_004955484:1,917,902...1,924,482 JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated ISO (MGI:MGI:3794139|PMID:18283110) MGI PMID:18283110 MGI:MGI:3794139 NCBI chrNW_004955463:7,296,204...7,360,935 JBrowse link
G Znf365 zinc finger protein 365 ISO (PMID:23966166) UniProtKB PMID:23966166 NCBI chrNW_004955425:15,652,373...15,675,255 JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004955424:19,293,949...19,333,170 JBrowse link
G Dek DEK proto-oncogene ISO (MGI:MGI:5317387|PMID:21653549) MGI PMID:21653549 MGI:MGI:5317387 NCBI chrNW_004955408:28,470,207...28,472,083 JBrowse link
G Mrnip MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chrNW_004955408:726,124...758,851 JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 ISO (MGI:MGI:5462481|PMID:23241889) MGI PMID:23241889 MGI:MGI:5462481 NCBI chrNW_004955514:1,084,522...1,162,624 JBrowse link
G Pot1 protection of telomeres 1 ISO (PMID:29227966) CACAO PMID:29227966 NCBI chrNW_004955479:6,140,599...6,230,512 JBrowse link
G Sirt7 sirtuin 7 ISO (MGI:MGI:5789069|PMID:27225932) UniProt PMID:27225932 MGI:MGI:5789069 NCBI chrNW_004955506:1,252,271...1,258,728 JBrowse link
G Was WASP actin nucleation promoting factor NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004955543:243,618...253,489 JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 ISO (PMID:11017067) BHF-UCL PMID:11017067 NCBI chrNW_004955478:4,952,551...4,982,223 JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul4a cullin 4A ISO (MGI:MGI:3850765|PMID:19481525) MGI PMID:19481525 MGI:MGI:3850765 NCBI chrNW_004955404:583,261...617,914 JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chrNW_004955431:15,373,207...15,377,339 JBrowse link
G Kat7 lysine acetyltransferase 7 ISO (PMID:28719581) UniProt PMID:28719581 NCBI chrNW_004955451:11,770,201...11,802,992 JBrowse link
G Rad52 RAD52 homolog, DNA repair protein ISO (PMID:19506022) MGI PMID:19506022 NCBI chrNW_004955454:6,206,195...6,227,859 JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 ISO (MGI:MGI:5616996|PMID:25378300) MGI PMID:25378300 MGI:MGI:5616996 NCBI chrNW_004955489:520,875...557,609 JBrowse link
replication-born double-strand break repair via sister chromatid exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase ISO (MGI:MGI:5648566|PMID:25597246) MGI PMID:25597246 MGI:MGI:5648566 NCBI chrNW_004955416:14,814,753...14,899,865 JBrowse link
G Fancb FA complementation group B ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955519:3,337,138...3,364,963 JBrowse link
G Rad51 RAD51 recombinase ISO (MGI:MGI:5442243|PMID:22778135) MGI PMID:22778135 MGI:MGI:5442243 NCBI chrNW_004955416:7,566,715...7,590,628 JBrowse link
G Recql5 RecQ like helicase 5 ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955506:6,574,802...6,612,763 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO (PMID:28002403) UniProtKB PMID:28002403 NCBI chrNW_004955555:1,293,416...1,315,839 JBrowse link
single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor ISO (PMID:17396150) UniProtKB PMID:17396150 NCBI chrNW_004955424:16,338,546...16,449,074 JBrowse link
G Aptx aprataxin ISO (PMID:14755728), (PMID:17519253)
(MGI:MGI:3665365|PMID:16964241)
UniProtKB PMID:14755728, PMID:16964241, PMID:17519253 MGI:MGI:3665365 NCBI chrNW_004955472:2,645,716...2,664,394 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:29545921) UniProt PMID:29545921 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Lig4 DNA ligase 4 ISO (PMID:8798671) UniProtKB PMID:8798671 NCBI chrNW_004955404:3,606,077...3,615,193 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:20097625) UniProtKB PMID:20097625 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 ISO (PMID:15811850)
(MGI:MGI:3763975|PMID:17948061), (MGI:MGI:3763978|PMID:17914460)
(PMID:17600775)
UniProtKB
MGI
PMID:15811850, PMID:17600775, PMID:17914460, PMID:17948061 MGI:MGI:3763975, MGI:MGI:3763978 NCBI chrNW_004955438:12,421,790...12,510,243 JBrowse link
G Tnp1 transition protein 1 ISO (PMID:12743712) UniProtKB PMID:12743712 NCBI chrNW_004955453:16,387,897...16,388,513 JBrowse link
telomere maintenance via base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO (PMID:24703901) BHF-UCL PMID:24703901 NCBI chrNW_004955550:1,273,170...1,275,843 JBrowse link
transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (PMID:8663148) UniProtKB PMID:8663148 NCBI chrNW_004955555:2,355,005...2,369,599 JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:8663148) UniProtKB PMID:8663148 NCBI chrNW_004955459:3,210,936...3,238,401 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO (PMID:16246722) UniProtKB PMID:16246722 NCBI chrNW_004955404:8,294,506...8,321,505 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:10564257), (PMID:16916636), (PMID:26620705)
(MGI:MGI:2448221|PMID:12509265), (MGI:MGI:87553|PMID:9150142)
UniProt
MGI
PMID:9150142, PMID:10564257, PMID:12509265, PMID:16916636, PMID:26620705 MGI:MGI:2448221, MGI:MGI:87553 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO (MGI:MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:MGI:3590574 NCBI chrNW_004955407:38,136,386...38,142,587 JBrowse link
G Usp7 ubiquitin specific peptidase 7 ISO (PMID:22466612) UniProtKB PMID:22466612 NCBI chrNW_004955442:9,316,022...9,355,751 JBrowse link
G Uvssa UV stimulated scaffold protein A ISO (PMID:22466610), (PMID:22466611), (PMID:22466612) UniProtKB PMID:22466610, PMID:22466611, PMID:22466612 NCBI chrNW_004955514:725,257...754,274 JBrowse link
G Xab2 XPA binding protein 2 ISO (PMID:10944529) UniProtKB PMID:10944529 NCBI chrNW_004955563:1,630,403...1,638,333 JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtl denticleless E3 ubiquitin protein ligase homolog ISO (PMID:20129063) UniProtKB PMID:20129063 NCBI chrNW_004955406:5,256,057...5,299,573 JBrowse link
G Faap20 FA core complex associated protein 20 ISO (PMID:22266823) UniProtKB PMID:22266823 NCBI chrNW_004955486:8,938,352...8,944,631 JBrowse link
G Parp10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:24695737) UniProt PMID:24695737 NCBI chrNW_004955454:2,644,718...2,651,962 JBrowse link
G Pclaf PCNA clamp associated factor ISO (PMID:23000965) UniProtKB PMID:23000965 NCBI chrNW_004955450:11,072,778...11,082,687 JBrowse link
G Pcna proliferating cell nuclear antigen ISO (PMID:20129063) UniProtKB PMID:20129063 NCBI chrNW_004955415:15,744,601...15,748,910 JBrowse link
G Poli DNA polymerase iota ISO (MGI:MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:MGI:3695544 NCBI chrNW_004955402:38,866,528...38,891,235 JBrowse link
G Poln DNA polymerase nu ISO (PMID:20102227)
(PMID:19908865)
UniProtKB PMID:19908865, PMID:20102227 NCBI chrNW_004955514:1,214,867...1,342,172 JBrowse link
G Primpol primase and DNA directed polymerase ISO (PMID:24240614), (PMID:24267451) UniProtKB PMID:24240614, PMID:24267451 NCBI chrNW_004955403:24,278,727...24,307,312 JBrowse link
G Sprtn SprT-like N-terminal domain ISO (PMID:22681887), (PMID:22902628)
(PMID:23042605), (PMID:23042607)
UniProtKB PMID:22681887, PMID:22902628, PMID:23042605, PMID:23042607 NCBI chrNW_004955492:7,463,228...7,476,683 JBrowse link
G Vcp valosin containing protein ISO (PMID:23042605) UniProtKB PMID:23042605 NCBI chrNW_004955472:1,111,649...1,124,076 JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chrNW_004955466:5,353,355...5,376,240 JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 ISO (PMID:20855601) UniProtKB PMID:20855601 NCBI chrNW_004955445:17,991,969...18,024,525 JBrowse link
G Cul4b cullin 4B ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004955572:1,308,491...1,365,147 JBrowse link
G Ddb1 damage specific DNA binding protein 1 ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004955511:6,209,777...6,233,594 JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004955422:961,602...977,066 JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:20855601) UniProtKB PMID:20855601 NCBI chrNW_004955416:7,870,521...8,020,862 JBrowse link
G LOC102022141 histone H2A type 1-D ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004955581:93,494...100,249 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:20670893) CACAO PMID:20670893 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:MGI:5427285|PMID:22431748)
(PMID:8077226)
MGI
CACAO
PMID:8077226, PMID:22431748 MGI:MGI:5427285 NCBI chrNW_004955429:16,935,901...16,968,285 JBrowse link
UV-damage excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:MGI:3697767|PMID:17049932) MGI PMID:17049932 MGI:MGI:3697767 NCBI chrNW_004955429:16,935,901...16,968,285 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11862
    metabolic process 7593
      cellular metabolic process 7005
        cellular macromolecule metabolic process 5473
          DNA metabolic process 652
            DNA repair 330
              DNA dealkylation involved in DNA repair 6
              DNA ligation involved in DNA repair + 6
              DNA replication proofreading 1
              DNA synthesis involved in DNA repair + 28
              UV-damage excision repair + 10
              base-excision repair + 35
              double-strand break repair + 192
              interstrand cross-link repair + 16
              mismatch repair + 20
              mitochondrial DNA repair 6
              negative regulation of DNA repair + 28
              non-photoreactive DNA repair 0
              non-recombinational repair + 62
              nucleotide phosphorylation involved in DNA repair 0
              nucleotide-excision repair + 43
              positive regulation of DNA repair + 71
              postreplication repair + 22
              protein-DNA covalent cross-linking repair 0
              pyrimidine dimer repair + 9
              recombinational repair + 102
              regulation of DNA repair + 118
              single strand break repair + 9
              viral DNA repair + 0
Path 2
Term Annotations click to browse term
  biological_process 11862
    metabolic process 7593
      cellular metabolic process 7005
        cellular aromatic compound metabolic process 3725
          nucleobase-containing compound metabolic process 3554
            nucleic acid metabolic process 3267
              DNA metabolic process 652
                DNA repair 330
                  DNA dealkylation involved in DNA repair 6
                  DNA ligation involved in DNA repair + 6
                  DNA replication proofreading 1
                  DNA synthesis involved in DNA repair + 28
                  UV-damage excision repair + 10
                  base-excision repair + 35
                  double-strand break repair + 192
                  interstrand cross-link repair + 16
                  mismatch repair + 20
                  mitochondrial DNA repair 6
                  negative regulation of DNA repair + 28
                  non-photoreactive DNA repair 0
                  non-recombinational repair + 62
                  nucleotide phosphorylation involved in DNA repair 0
                  nucleotide-excision repair + 43
                  positive regulation of DNA repair + 71
                  postreplication repair + 22
                  protein-DNA covalent cross-linking repair 0
                  pyrimidine dimer repair + 9
                  recombinational repair + 102
                  regulation of DNA repair + 118
                  single strand break repair + 9
                  viral DNA repair + 0
paths to the root