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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA repair
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Accession:GO:0006281 term browser browse the term
Definition:The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Synonyms:xref: Wikipedia:DNA_repair


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DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit IEA UniProt GO_REF:0000043 NCBI chr32:7,298,789...7,316,665
Ensembl chr32:7,298,790...7,317,001
JBrowse link
G ADPRS ADP-ribosylserine hydrolase IEA Ensembl GO_REF:0000107 NCBI chr15:6,116,516...6,122,330
Ensembl chr15:6,116,500...6,123,798
JBrowse link
G ALKBH1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530), (PMID:19959401) UniProtKB PMID:18603530, PMID:19959401 NCBI chr 8:50,444,994...50,471,151
Ensembl chr 8:50,445,748...50,471,135
JBrowse link
G ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase ISO (PMID:16858410) UniProtKB PMID:16858410 NCBI chr18:25,864,041...25,899,226
Ensembl chr18:25,824,877...25,899,079
JBrowse link
G ANKLE1 ankyrin repeat and LEM domain containing 1 NOT ISO (MGI:MGI:5800654|PMID:27010503) UniProtKB PMID:27010503 MGI:MGI:5800654 NCBI chr20:45,461,135...45,465,922
Ensembl chr20:45,461,676...45,465,417
JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO (PMID:9560228) UniProtKB PMID:9560228 NCBI chr15:17,786,808...17,789,422
Ensembl chr15:17,786,357...17,789,422
JBrowse link
G APTX aprataxin IEA UniProt GO_REF:0000043 NCBI chr11:50,111,003...50,155,937
Ensembl chr11:50,113,073...50,132,284
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone IEA Ensembl GO_REF:0000107 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ATM ATM serine/threonine kinase IEA InterPro GO_REF:0000002 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G ATR ATR serine/threonine kinase IEA UniProt GO_REF:0000043 NCBI chr23:38,131,956...38,223,888
Ensembl chr23:38,132,788...38,224,016
JBrowse link
G ATRIP ATR interacting protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:40,626,828...40,642,689
Ensembl chr20:40,626,831...40,642,594
JBrowse link
G ATRX ATRX chromatin remodeler IEA UniProt GO_REF:0000043 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G BACH1 BTB domain and CNC homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr31:24,269,310...24,310,369
Ensembl chr31:24,269,280...24,381,454
JBrowse link
G BCCIP BRCA2 and CDKN1A interacting protein IEA UniProt GO_REF:0000043 NCBI chr28:34,983,827...34,999,180
Ensembl chr28:34,983,858...34,999,118
JBrowse link
G BLM BLM RecQ like helicase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G BRCA1 BRCA1 DNA repair associated IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000043 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr  X:123,081,262...123,143,509 JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A IEA UniProt GO_REF:0000043 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHD1L chromodomain helicase DNA binding protein 1 like IEA InterPro GO_REF:0000002 NCBI chr17:57,725,823...57,806,065
Ensembl chr17:57,725,640...57,806,048
JBrowse link
G CHEK1 checkpoint kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669
JBrowse link
G CHRNA4 cholinergic receptor nicotinic alpha 4 subunit IEA Ensembl GO_REF:0000107 NCBI chr24:47,024,948...47,036,507
Ensembl chr24:47,025,187...47,042,266
JBrowse link
G DDB1 damage specific DNA binding protein 1 IEA InterPro GO_REF:0000002 NCBI chr18:55,064,720...55,097,623
Ensembl chr18:55,064,729...55,097,627
JBrowse link
G DDB2 damage specific DNA binding protein 2 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr18:42,354,201...42,378,463
Ensembl chr18:42,354,572...42,377,947
JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 IEA InterPro GO_REF:0000002 NCBI chr15:16,077,164...16,085,666
Ensembl chr15:16,077,206...16,085,687
JBrowse link
G DMC1 DNA meiotic recombinase 1 IEA InterPro GO_REF:0000002 NCBI chr10:26,228,662...26,265,377
Ensembl chr10:26,230,428...26,264,820
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:56,805,030...56,868,771
Ensembl chr20:56,803,242...56,852,539
JBrowse link
G EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 IEA InterPro GO_REF:0000002 NCBI chr14:47,604,548...47,721,301
Ensembl chr14:47,612,004...47,720,906
JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 IEA InterPro GO_REF:0000002 NCBI chr 9:26,342,419...26,350,561
Ensembl chr 9:26,344,438...26,349,997
JBrowse link
G EME2 essential meiotic structure-specific endonuclease subunit 2 IEA InterPro GO_REF:0000002 NCBI chr 6:39,127,433...39,129,487 JBrowse link
G ENDOV endonuclease V IEA InterPro GO_REF:0000002 NCBI chr 9:1,418,666...1,436,726
Ensembl chr 9:1,407,398...1,437,177
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IEA UniProt GO_REF:0000043 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (MGI:MGI:2179786|PMID:11950998) MGI PMID:11950998 MGI:MGI:2179786 NCBI chr 1:110,173,781...110,191,612
Ensembl chr 1:110,173,715...110,190,125
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:2167179) UniProtKB PMID:2167179 NCBI chr19:23,310,911...23,344,083
Ensembl chr19:23,310,986...23,337,683
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:19596235)
(MGI:MGI:3027419|PMID:14729965)
(PMID:17055345)
UniProtKB
MGI
BHF-UCL
PMID:14729965, PMID:17055345, PMID:19596235 MGI:MGI:3027419 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO (MGI:MGI:3041918|PMID:15082767) MGI PMID:15082767 MGI:MGI:3041918 NCBI chr22:52,339,011...52,372,618 JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:26218421)
(MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
(MGI:MGI:1861042|PMID:10806208)
UniProt
MGI
PMID:10806208, PMID:12447686, PMID:17213818, PMID:26218421 MGI:MGI:1861042, MGI:MGI:3715683, MGI:MGI:3759387 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 IEA UniProt GO_REF:0000043 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 IEA UniProt GO_REF:0000043 NCBI chr24:34,126,086...34,308,412
Ensembl chr24:34,082,197...34,308,423
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 IEA UniProt GO_REF:0000043 NCBI chr 2:72,313,412...72,417,729
Ensembl chr 2:72,328,362...72,414,058
JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 IEA UniProt GO_REF:0000043 NCBI chr 1:26,208,514...26,514,601
Ensembl chr 1:26,272,448...26,514,201
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603073) UniProtKB PMID:20603073 NCBI chr 3:38,013,744...38,053,096
Ensembl chr 3:38,013,739...38,052,202
JBrowse link
G FANCD2 FA complementation group D2 IEA InterPro GO_REF:0000002 NCBI chr20:8,240,270...8,297,269
Ensembl chr20:8,240,311...8,297,568
JBrowse link
G FANCI FA complementation group I IEA InterPro GO_REF:0000002 NCBI chr 3:52,282,955...52,357,874
Ensembl chr 3:52,282,731...52,357,226
JBrowse link
G FANCL FA complementation group L IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:58,521,480...58,637,352
Ensembl chr10:58,521,552...58,637,482
JBrowse link
G FBH1 F-box DNA helicase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:30,047,994...30,095,761
Ensembl chr 2:30,048,567...30,095,696
JBrowse link
G FEN1 flap structure-specific endonuclease 1 ISO (MGI:MGI:2668283|PMID:12861020) MGI PMID:12861020 MGI:MGI:2668283 NCBI chr18:54,680,627...54,686,502
Ensembl chr18:54,681,760...54,682,902
JBrowse link
G GEN1 GEN1 Holliday junction 5' flap endonuclease IEA UniProt GO_REF:0000043 NCBI chr17:13,201,540...13,233,028
Ensembl chr17:13,201,777...13,232,120
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:40,770,661...40,807,329
Ensembl chr21:40,770,983...40,806,556
JBrowse link
G H2AX H2A.X variant histone ISO (MGI:MGI:3053255|PMID:15364958)
(MGI:MGI:2179182|PMID:11934988)
MGI PMID:11934988, PMID:15364958 MGI:MGI:2179182, MGI:MGI:3053255 NCBI chr 5:14,765,625...14,766,590
Ensembl chr 5:14,766,126...14,766,557
JBrowse link
G HDAC9 histone deacetylase 9 ISO (MGI:MGI:5139938|PMID:21746928) MGI PMID:21746928 MGI:MGI:5139938 NCBI chr14:32,469,349...33,310,439
Ensembl chr14:32,588,414...33,304,387
JBrowse link
G HINFP histone H4 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr 5:14,731,592...14,742,893
Ensembl chr 5:14,731,588...14,742,559
JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 IEA UniProt GO_REF:0000043 NCBI chr  X:45,234,666...45,409,641
Ensembl chr  X:45,234,322...45,410,043
JBrowse link
G INIP INTS3 and NABP interacting protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:67,137,101...67,154,443
Ensembl chr11:67,137,710...67,154,486
JBrowse link
G INO80 INO80 complex ATPase subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:8,100,536...8,229,868
Ensembl chr30:8,101,934...8,202,025
JBrowse link
G INTS3 integrator complex subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr 7:43,325,522...43,361,669
Ensembl chr 7:43,326,315...43,361,362
JBrowse link
G KMT5B lysine methyltransferase 5B IEA Ensembl GO_REF:0000107 NCBI chr18:49,655,783...49,691,899
Ensembl chr18:49,637,610...49,827,034
JBrowse link
G KMT5C lysine methyltransferase 5C IEA Ensembl GO_REF:0000107 NCBI chr 1:102,334,687...102,342,090
Ensembl chr 1:102,333,543...102,342,118
JBrowse link
G LIG1 DNA ligase 1 NOT ISO (MGI:MGI:4943978|PMID:21390131)
(MGI:MGI:2178155|PMID:11896201)
MGI
RGD
PMID:1730240, PMID:11896201, PMID:21390131 MGI:MGI:2178155, MGI:MGI:4943978, RGD:724410 NCBI chr 1:108,105,523...108,143,954
Ensembl chr 1:108,105,987...108,143,953
JBrowse link
G LIG4 DNA ligase 4 ISO (MGI:MGI:4943978|PMID:21390131)
(MGI:MGI:3037169|PMID:11779495)
MGI PMID:11779495, PMID:21390131 MGI:MGI:3037169, MGI:MGI:4943978 NCBI chr22:56,980,333...56,987,636
Ensembl chr22:56,980,622...56,983,357
JBrowse link
G LOC483061 DNA excision repair protein ERCC-1 pseudogene IEA UniProt GO_REF:0000043 NCBI chr17:36,535,679...36,536,408 JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase IEA UniProt GO_REF:0000043 NCBI chr20:5,716,162...5,725,068
Ensembl chr20:5,716,239...5,724,881
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
G MLH1 mutL homolog 1 ISO (MGI:MGI:3513725|PMID:15480418)
(MGI:MGI:2677087|PMID:13679151)
MGI PMID:13679151, PMID:15480418 MGI:MGI:2677087, MGI:MGI:3513725 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component IEA UniProt GO_REF:0000104 NCBI chr28:10,749,327...10,783,846
Ensembl chr28:10,749,325...10,783,805
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:35,747,883...35,946,353
Ensembl chr 8:35,756,933...35,946,353
JBrowse link
G MSH2 mutS homolog 2 ISO (PMID:8942985)
(MGI:MGI:2667543|PMID:12687013)
BHF-UCL
MGI
PMID:8942985, PMID:12687013 MGI:MGI:2667543 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G MSH3 mutS homolog 3 ISO (PMID:8942985) BHF-UCL PMID:8942985 NCBI chr 3:26,335,788...26,520,633
Ensembl chr 3:26,336,403...26,518,521
JBrowse link
G MSH6 mutS homolog 6 ISO (PMID:8942985) BHF-UCL PMID:8942985 NCBI chr10:49,825,330...49,838,036
Ensembl chr10:49,803,898...49,838,028
JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit ISO (PMID:19596235) UniProtKB PMID:19596235 NCBI chr18:51,396,980...51,404,563
Ensembl chr18:51,396,980...51,402,534
JBrowse link
G MUTYH mutY DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:15,018,345...15,026,539
Ensembl chr15:14,906,543...15,026,539
JBrowse link
G NABP1 nucleic acid binding protein 1 ISO (PMID:19683501) UniProtKB PMID:19683501 NCBI chr37:2,157,357...2,163,812
Ensembl chr37:2,157,356...2,161,091
JBrowse link
G NABP2 nucleic acid binding protein 2 ISO (PMID:18449195), (PMID:19683501)
(MGI:MGI:5629774|PMID:25589350)
UniProtKB
BHF-UCL
PMID:18449195, PMID:19683501, PMID:25589350 MGI:MGI:5629774 NCBI chr10:546,964...551,360
Ensembl chr10:546,964...551,107
JBrowse link
G NEIL1 nei like DNA glycosylase 1 ISO (MGI:MGI:2389521|PMID:12200441) MGI PMID:12200441 MGI:MGI:2389521 NCBI chr30:38,213,429...38,218,132
Ensembl chr30:38,213,250...38,218,130
JBrowse link
G NOP53 NOP53 ribosome biogenesis factor IEA Ensembl GO_REF:0000107 NCBI chr 1:108,307,039...108,315,732
Ensembl chr 1:108,307,042...108,316,495
JBrowse link
G NPM1 nucleophosmin 1 ISO (PMID:19188445) UniProtKB PMID:19188445 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G NSMCE4A NSE4 homolog A, SMC5-SMC6 complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:31,710,690...31,723,301
Ensembl chr28:31,712,719...31,718,546
JBrowse link
G NUDT1 nudix hydrolase 1 IEA InterPro GO_REF:0000002 NCBI chr 6:14,874,459...14,881,517
Ensembl chr 6:14,859,518...14,882,704
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase ISO (MGI:MGI:2668786|PMID:12874039)
(MGI:MGI:2150199|PMID:11532868), (MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
(MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
MGI PMID:11532868, PMID:12447686, PMID:12874039, PMID:17213818 MGI:MGI:2150199, MGI:MGI:2668786, MGI:MGI:3715683, MGI:MGI:3759387 NCBI chr20:8,486,150...8,491,448
Ensembl chr20:8,480,005...8,491,264
JBrowse link
G PARK7 Parkinsonism associated deglycase ISO (PMID:28596309) UniProtKB PMID:28596309 NCBI chr 5:61,576,219...61,592,325
Ensembl chr 5:61,576,069...61,592,303
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IEA UniProt GO_REF:0000043 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 IEA UniProt GO_REF:0000043 NCBI chr15:17,705,966...17,716,743
Ensembl chr15:17,705,975...17,716,094
JBrowse link
G PDS5A PDS5 cohesin associated factor A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:72,521,839...72,673,164
Ensembl chr 3:72,521,868...72,673,164
JBrowse link
G PDS5B PDS5 cohesin associated factor B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:7,407,533...7,587,177
Ensembl chr25:7,410,481...7,586,563
JBrowse link
G PEX14 peroxisomal biogenesis factor 14 IEA Ensembl GO_REF:0000107 NCBI chr 2:85,379,378...85,389,175 JBrowse link
G PIF1 PIF1 5'-to-3' DNA helicase IEA UniProt GO_REF:0000043, GO_REF:0000104 NCBI chr30:29,223,507...29,232,584
Ensembl chr30:29,157,119...29,232,043
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component ISO (MGI:MGI:3513725|PMID:15480418) MGI PMID:15480418 MGI:MGI:3513725 NCBI chr 6:11,411,062...11,438,767
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase IEA
IBA
(PMID:21873635) InterPro
GO_Central
Ensembl
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:11470886)
(PMID:3335506)
UniProtKB PMID:3335506, PMID:11470886 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902
JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit IEA UniProt GO_REF:0000043
G POLE DNA polymerase epsilon, catalytic subunit IEA InterPro GO_REF:0000002 NCBI chr26:433,990...481,018
Ensembl chr26:433,879...479,917
JBrowse link
G POLG2 DNA polymerase gamma 2, accessory subunit IEA InterPro GO_REF:0000002 NCBI chr 9:12,258,188...12,298,376
Ensembl chr 9:12,269,990...12,298,272
JBrowse link
G POLI DNA polymerase iota IEA InterPro GO_REF:0000002 NCBI chr 1:21,162,657...21,188,328
Ensembl chr 1:21,163,140...21,187,947
JBrowse link
G POLK DNA polymerase kappa IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000043 NCBI chr 3:30,793,893...30,860,240
Ensembl chr 3:30,712,571...30,859,106
JBrowse link
G POLL DNA polymerase lambda IEA UniProt GO_REF:0000043 NCBI chr28:14,193,065...14,201,312
Ensembl chr28:14,193,067...14,201,334
JBrowse link
G POLQ DNA polymerase theta ISO (MGI:MGI:3511081|PMID:15542845)
(MGI:MGI:2654407|PMID:12663541), (MGI:MGI:3511081|PMID:15542845)
MGI PMID:12663541, PMID:15542845 MGI:MGI:2654407, MGI:MGI:3511081 NCBI chr33:24,713,174...24,837,113
Ensembl chr33:24,714,086...24,837,402
JBrowse link
G PRPF19 pre-mRNA processing factor 19 IEA UniProt GO_REF:0000043 NCBI chr18:55,389,902...55,400,241
Ensembl chr18:55,389,897...55,400,240
JBrowse link
G PSME4 proteasome activator subunit 4 IEA Ensembl
UniProt
GO_REF:0000043, GO_REF:0000107 NCBI chr10:54,873,093...54,960,030
Ensembl chr10:54,875,177...54,960,035
JBrowse link
G PWWP3A PWWP domain containing 3A, DNA repair factor IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr20:57,452,289...57,469,207
Ensembl chr20:57,452,300...57,468,692
JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000043 NCBI chr 4:73,372,391...73,393,148
Ensembl chr 4:73,385,566...73,452,033
JBrowse link
G RAD17 RAD17 checkpoint clamp loader component IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 2:54,407,184...54,437,676
Ensembl chr 2:54,407,228...54,437,632
JBrowse link
G RAD50 RAD50 double strand break repair protein IEA UniProt GO_REF:0000043 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819
JBrowse link
G RAD51 RAD51 recombinase IEA InterPro GO_REF:0000002 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IEA InterPro GO_REF:0000002 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G RAD51C RAD51 paralog C IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 9:33,289,675...33,347,411
Ensembl chr 9:33,289,742...33,326,405
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA UniProt GO_REF:0000043 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
G RAD9A RAD9 checkpoint clamp component A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:50,065,154...50,070,582
Ensembl chr18:50,065,685...50,070,710
JBrowse link
G RAD9B RAD9 checkpoint clamp component B IEA
IBA
(PMID:21873635) InterPro
UniProt
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000104 NCBI chr26:8,309,384...8,333,414
Ensembl chr26:8,309,592...8,343,424
JBrowse link
G RBM17 RNA binding motif protein 17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:29,828,720...29,853,922
Ensembl chr 2:29,829,210...29,853,841
JBrowse link
G RBPMS2 RNA binding protein, mRNA processing factor 2 IEA UniProt GO_REF:0000043, GO_REF:0000104 NCBI chr30:29,160,879...29,187,231
Ensembl chr30:29,157,119...29,232,043
JBrowse link
G RECQL RecQ like helicase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:25,590,326...25,636,304
Ensembl chr27:25,590,831...25,636,685
JBrowse link
G RECQL5 RecQ like helicase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit ISO (MGI:MGI:2176643|PMID:11884603) MGI PMID:11884603 MGI:MGI:2176643 NCBI chr12:67,776,285...67,953,337
Ensembl chr12:67,756,924...67,953,553
JBrowse link
G RFC1 replication factor C subunit 1 IEA InterPro GO_REF:0000002 NCBI chr 3:73,062,292...73,136,576
Ensembl chr 3:73,062,329...73,135,096
JBrowse link
G RFC2 replication factor C subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:6,119,203...6,159,293
Ensembl chr 6:6,119,164...6,160,886
JBrowse link
G RFC3 replication factor C subunit 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:6,469,865...6,486,935
Ensembl chr25:6,469,867...6,486,849
JBrowse link
G RFC4 replication factor C subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:19,361,024...19,377,289
Ensembl chr34:19,361,044...19,377,294
JBrowse link
G RFC5 replication factor C subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:14,428,661...14,439,641
Ensembl chr26:14,428,695...14,438,986
JBrowse link
G RMI2 RecQ mediated genome instability 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:31,440,493...31,445,318
Ensembl chr 6:31,441,517...31,445,310
JBrowse link
G RPA1 replication protein A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G RPA2 replication protein A2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G RPA3 replication protein A3 IEA InterPro GO_REF:0000002 NCBI chr14:23,230,447...23,234,554
Ensembl chr11:2,893,352...2,893,717
JBrowse link
G RPAIN RPA interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 5:31,359,735...31,366,108
Ensembl chr 5:31,358,594...31,365,971
JBrowse link
G RPS3 ribosomal protein S3 IEA UniProt GO_REF:0000043 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
G RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B IEA Ensembl GO_REF:0000107 NCBI chr13:3,774,725...3,838,576
Ensembl chr13:3,799,025...3,837,934
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 IEA UniProt GO_REF:0000104 NCBI chr24:47,219,977...47,248,791 JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 IEA UniProt GO_REF:0000043 NCBI chr20:2,095,807...2,137,528
Ensembl chr20:2,095,786...2,137,579
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 IEA UniProt GO_REF:0000043 NCBI chr 1:107,384,328...107,400,849
Ensembl chr 1:107,384,342...107,400,505
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA UniProt GO_REF:0000043 NCBI chr24:25,623,997...25,676,336
Ensembl chr24:25,626,134...25,680,902
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit IEA UniProt GO_REF:0000104 NCBI chr 6:18,171,190...18,174,577 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit ISO (PMID:19595722) UniProtKB PMID:19595722 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
G SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr37:23,364,941...23,425,206
Ensembl chr37:23,367,220...23,419,248
JBrowse link
G SMC1A structural maintenance of chromosomes 1A IEA InterPro GO_REF:0000002 NCBI chr  X:45,099,312...45,148,103
Ensembl chr  X:45,109,653...45,148,001
JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 ISO RGD PMID:12718542 RGD:2317001 NCBI chr27:1,086,675...1,093,175
Ensembl chr27:1,089,808...1,111,129
JBrowse link
G SPRTN SprT-like N-terminal domain IEA UniProt GO_REF:0000043 NCBI chr 4:8,120,151...8,133,402
Ensembl chr 4:8,120,351...8,133,191
JBrowse link
G SSRP1 structure specific recognition protein 1 IEA UniProt GO_REF:0000043 NCBI chr18:38,802,673...38,812,134
Ensembl chr18:38,802,619...38,812,131
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit IEA UniProt GO_REF:0000104 NCBI chr15:18,387,624...18,429,553
Ensembl chr15:18,388,512...18,429,553
JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 ISO (PMID:17948061)
(MGI:MGI:4943978|PMID:21390131)
UniProtKB
MGI
PMID:17948061, PMID:21390131 MGI:MGI:4943978 NCBI chr 8:61,023,564...61,107,599
Ensembl chr 8:61,024,084...61,107,506
JBrowse link
G TIMELESS timeless circadian regulator IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 ISO (MGI:MGI:3053255|PMID:15364958) MGI PMID:15364958 MGI:MGI:3053255 NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
JBrowse link
G TREX2 three prime repair exonuclease 2 IEA InterPro GO_REF:0000002 NCBI chr  X:121,263,341...121,265,009
Ensembl chr  X:121,258,646...121,264,555
JBrowse link
G TRIM28 tripartite motif containing 28 ISO (PMID:17178852) UniProtKB PMID:17178852 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 IEA UniProt GO_REF:0000043 NCBI chr25:42,060,103...42,208,326
Ensembl chr25:42,060,991...42,208,054
JBrowse link
G TRRAP transformation/transcription domain associated protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:10,519,734...10,635,175
Ensembl chr 6:10,519,711...10,632,776
JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:91,608,936...91,617,993
Ensembl chr  X:91,529,855...91,617,086
JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:22,523,671...22,541,473
Ensembl chr11:22,525,051...22,540,388
JBrowse link
G UBE2T ubiquitin conjugating enzyme E2 T ISO (PMID:16916645) UniProtKB PMID:16916645 NCBI chr 7:719,128...726,128
Ensembl chr 7:719,116...725,898
JBrowse link
G UBE2U ubiquitin conjugating enzyme E2 U IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:45,947,637...45,998,353
Ensembl chr 5:45,947,639...45,997,722
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase IEA Ensembl GO_REF:0000107 NCBI chr20:44,234,411...44,271,129
Ensembl chr20:44,236,264...44,270,916
JBrowse link
G USP10 ubiquitin specific peptidase 10 IEA UniProt GO_REF:0000043 NCBI chr 5:67,736,215...67,774,756
Ensembl chr 5:67,736,730...67,809,206
JBrowse link
G USP3 ubiquitin specific peptidase 3 IEA Ensembl GO_REF:0000107 NCBI chr30:28,073,484...28,184,121
Ensembl chr30:28,072,655...28,181,749
JBrowse link
G USP45 ubiquitin specific peptidase 45 IEA Ensembl GO_REF:0000107 NCBI chr12:57,637,890...57,706,562
Ensembl chr12:57,642,515...57,706,511
JBrowse link
G UVRAG UV radiation resistance associated ISO (MGI:MGI:5644018|PMID:22542840)
(PMID:22542840)
UniProtKB PMID:22542840 MGI:MGI:5644018 NCBI chr21:22,505,968...22,821,027
Ensembl chr21:22,507,162...22,820,824
JBrowse link
G WDHD1 WD repeat and HMG-box DNA binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:30,820,488...30,872,515
Ensembl chr 8:30,821,096...30,872,512
JBrowse link
G WRN WRN RecQ like helicase IEA InterPro GO_REF:0000002 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
G XPA XPA, DNA damage recognition and repair factor ISO (PMID:1601884)
(MGI:MGI:1270007|PMID:9661901), (MGI:MGI:2179786|PMID:11950998)
CAFA
MGI
PMID:1601884, PMID:9661901, PMID:11950998 MGI:MGI:1270007, MGI:MGI:2179786 NCBI chr11:54,976,978...54,996,140
Ensembl chr11:54,976,976...54,996,065
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:MGI:2445277|PMID:12555660) MGI PMID:12555660 MGI:MGI:2445277 NCBI chr20:4,299,644...4,328,826
Ensembl chr20:4,300,386...4,328,768
JBrowse link
G XRCC1 X-ray repair cross complementing 1 ISO (MGI:MGI:4359093|PMID:19633665) MGI PMID:19633665 MGI:MGI:4359093 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
G XRCC2 X-ray repair cross complementing 2 ISO (PMID:10422536) BHF-UCL PMID:10422536 NCBI chr16:16,402,821...16,429,095
Ensembl chr16:16,402,933...16,429,037
JBrowse link
G XRCC3 X-ray repair cross complementing 3 ISO (PMID:10422536) BHF-UCL PMID:10422536 NCBI chr 8:71,441,732...71,452,922
Ensembl chr 8:71,442,429...71,449,408
JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chr 8:38,933,721...38,959,306
Ensembl chr 8:38,933,805...38,959,306
JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 IEA Ensembl GO_REF:0000107 NCBI chr15:2,669,546...2,708,480
Ensembl chr15:2,670,326...2,709,160
JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr19:38,003,273...38,302,598
Ensembl chr19:37,957,421...38,301,888
JBrowse link
base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:17,786,808...17,789,422
Ensembl chr15:17,786,357...17,789,422
JBrowse link
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:46,692,667...46,703,309
Ensembl chr  X:46,693,191...46,702,195
JBrowse link
G DNA2 DNA replication helicase/nuclease 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:19,626,001...19,683,819
Ensembl chr 4:19,626,977...19,684,660
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G FEN1 flap structure-specific endonuclease 1 IEA UniProtKB GO_REF:0000104 NCBI chr18:54,680,627...54,686,502
Ensembl chr18:54,681,760...54,682,902
JBrowse link
G HMGA1 high mobility group AT-hook 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:3,528,818...3,538,533
Ensembl chr12:3,533,102...3,538,533
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:19465398) UniProtKB PMID:19465398 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HMGB1 high mobility group box 1 IEA Ensembl GO_REF:0000107 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr  X:45,234,666...45,409,641
Ensembl chr  X:45,234,322...45,410,043
JBrowse link
G LIG1 DNA ligase 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:108,105,523...108,143,954
Ensembl chr 1:108,105,987...108,143,953
JBrowse link
G MPG N-methylpurine DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:40,390,053...40,396,893
Ensembl chr 6:40,390,124...40,393,810
JBrowse link
G MUTYH mutY DNA glycosylase IBA
IEA
(PMID:21873635) GO_Central
InterPro
UniProt
PMID:21873635 GO_REF:0000002, GO_REF:0000104 NCBI chr15:15,018,345...15,026,539
Ensembl chr15:14,906,543...15,026,539
JBrowse link
G NEIL1 nei like DNA glycosylase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr30:38,213,429...38,218,132
Ensembl chr30:38,213,250...38,218,130
JBrowse link
G NEIL2 nei like DNA glycosylase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:26,102,652...26,117,418
Ensembl chr25:26,103,111...26,117,544
JBrowse link
G NEIL3 nei like DNA glycosylase 3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
Ensembl
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr16:52,383,585...52,472,398
Ensembl chr16:52,387,389...52,436,173
JBrowse link
G NTHL1 nth like DNA glycosylase 1 IEA InterPro GO_REF:0000002 NCBI chr 6:38,899,144...38,904,637
Ensembl chr 6:38,899,126...38,905,622
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase IEA Ensembl GO_REF:0000107 NCBI chr20:8,486,150...8,491,448
Ensembl chr20:8,480,005...8,491,264
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 ISO (MGI:MGI:2181257|PMID:11948190) MGI PMID:11948190 MGI:MGI:2181257 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 IEA Ensembl GO_REF:0000107 NCBI chr15:17,705,966...17,716,743
Ensembl chr15:17,705,975...17,716,094
JBrowse link
G POLB DNA polymerase beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:23,306,359...23,335,352
Ensembl chr16:23,306,367...23,335,322
JBrowse link
G POLQ DNA polymerase theta IEA Ensembl GO_REF:0000107 NCBI chr33:24,713,174...24,837,113
Ensembl chr33:24,714,086...24,837,402
JBrowse link
G RPA1 replication protein A1 IEA Ensembl GO_REF:0000107 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G RPA2 replication protein A2 IEA Ensembl GO_REF:0000107 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:23,230,447...23,234,554
Ensembl chr11:2,893,352...2,893,717
JBrowse link
G SIRT6 sirtuin 6 IEA Ensembl GO_REF:0000107 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr27:1,086,675...1,093,175
Ensembl chr27:1,089,808...1,111,129
JBrowse link
G TDG thymine DNA glycosylase ISO (MGI:MGI:5287540|PMID:21817016)
(PMID:21862836), (PMID:22327402)
UniProtKB PMID:21817016, PMID:21862836, PMID:22327402 MGI:MGI:5287540 NCBI chr15:42,493,593...42,516,868
Ensembl chr15:42,493,737...42,515,448
JBrowse link
G TESK2 testis associated actin remodelling kinase 2 IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000104 NCBI chr15:14,871,104...15,014,896
Ensembl chr15:14,906,543...15,026,539
JBrowse link
G UNG uracil DNA glycosylase IEA UniProt GO_REF:0000104 NCBI chr26:17,900,354...17,911,126
Ensembl chr26:17,901,357...17,911,288
JBrowse link
G USP47 ubiquitin specific peptidase 47 IEA Ensembl GO_REF:0000107 NCBI chr21:34,917,664...35,027,969
Ensembl chr21:34,911,269...35,026,790
JBrowse link
G WRN WRN RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:54,976,978...54,996,140
Ensembl chr11:54,976,976...54,996,065
JBrowse link
G XRCC1 X-ray repair cross complementing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
base-excision repair, AP site formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NTHL1 nth like DNA glycosylase 1 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 6:38,899,144...38,904,637
Ensembl chr 6:38,899,126...38,905,622
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:8,486,150...8,491,448
Ensembl chr20:8,480,005...8,491,264
JBrowse link
G TDG thymine DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:42,493,593...42,516,868
Ensembl chr15:42,493,737...42,515,448
JBrowse link
base-excision repair, AP site formation via deaminated base removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UNG uracil DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:17,900,354...17,911,126
Ensembl chr26:17,901,357...17,911,288
JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIG3 DNA ligase 3 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
JBrowse link
base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCNA proliferating cell nuclear antigen IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G POLB DNA polymerase beta IEA Ensembl GO_REF:0000107 NCBI chr16:23,306,359...23,335,352
Ensembl chr16:23,306,367...23,335,322
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:106,302,583...106,331,353
Ensembl chr 1:106,302,574...106,331,385
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr26:433,990...481,018
Ensembl chr26:433,879...479,917
JBrowse link
G POLG DNA polymerase gamma, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:52,357,062...52,373,768
Ensembl chr 3:52,357,068...52,421,544
JBrowse link
G POLL DNA polymerase lambda IEA Ensembl GO_REF:0000107 NCBI chr28:14,193,065...14,201,312
Ensembl chr28:14,193,067...14,201,334
JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALKBH1 alkB homolog 1, histone H2A dioxygenase IEA Ensembl GO_REF:0000107 NCBI chr 8:50,444,994...50,471,151
Ensembl chr 8:50,445,748...50,471,135
JBrowse link
G ALKBH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:17,911,892...17,918,911
Ensembl chr26:17,911,763...17,917,788
JBrowse link
G ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr18:25,864,041...25,899,226
Ensembl chr18:25,824,877...25,899,079
JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr12:58,590,888...58,932,677
Ensembl chr12:58,592,025...58,932,615
JBrowse link
G FTO FTO alpha-ketoglutarate dependent dioxygenase IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 2:61,699,864...62,080,199
Ensembl chr 2:61,652,236...62,080,059
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G DNA2 DNA replication helicase/nuclease 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:19,626,001...19,683,819
Ensembl chr 4:19,626,977...19,684,660
JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:43,028,537...43,082,038
Ensembl chr 8:43,042,563...43,187,969
JBrowse link
G GALNT16 polypeptide N-acetylgalactosaminyltransferase 16 IEA Ensembl GO_REF:0000107 NCBI chr 8:43,099,717...43,189,995
Ensembl chr 8:43,042,563...43,187,969
JBrowse link
G SETMAR SET domain without mariner transposase fusion ISO (PMID:21491884) UniProtKB PMID:21491884 NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020
JBrowse link
G SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 IEA Ensembl GO_REF:0000107 NCBI chr32:17,089,514...17,167,917
Ensembl chr32:17,090,293...17,166,648
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N ISO (PMID:17349954) HGNC PMID:17349954 NCBI chr15:33,651,478...33,687,049 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 IEA Ensembl GO_REF:0000107 NCBI chr29:307,502...359,058
Ensembl chr29:307,525...357,962
JBrowse link
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD52 RAD52 homolog, DNA repair protein IEA Ensembl GO_REF:0000107 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
G RBBP8 RB binding protein 8, endonuclease IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 7:65,218,288...65,319,696
Ensembl chr 7:65,218,297...65,297,099
JBrowse link
G RNF138 ring finger protein 138 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:57,521,416...57,554,793
Ensembl chr 7:57,523,595...57,556,005
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit ISO (PMID:19595721) UniProtKB PMID:19595721 NCBI chr 6:18,171,190...18,174,577 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IEA Ensembl GO_REF:0000107 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 ISS AgBase GO_REF:0000024 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HMGB2 high mobility group box 2 ISO (PMID:9600082) AgBase PMID:9600082 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G LIG1 DNA ligase 1 NOT IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 1:108,105,523...108,143,954
Ensembl chr 1:108,105,987...108,143,953
JBrowse link
G LIG3 DNA ligase 3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
JBrowse link
G LIG4 DNA ligase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:56,980,333...56,987,636
Ensembl chr22:56,980,622...56,983,357
JBrowse link
G PAXX PAXX non-homologous end joining factor IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:48,637,735...48,639,289
Ensembl chr 9:48,637,731...48,639,239
JBrowse link
G XRCC4 X-ray repair cross complementing 4 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:24,316,598...24,547,463
Ensembl chr 3:24,269,974...24,533,465
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMC1 DNA meiotic recombinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:26,228,662...26,265,377
Ensembl chr10:26,230,428...26,264,820
JBrowse link
G RAD51 RAD51 recombinase ISS
IEA
IBA
(PMID:21873635) UniProtKB
Ensembl
GO_Central
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA InterPro GO_REF:0000002 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
G SWI5 SWI5 homologous recombination repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:55,229,510...55,234,645
Ensembl chr 9:55,229,550...55,234,489
JBrowse link
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLD1 DNA polymerase delta 1, catalytic subunit IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:106,302,583...106,331,353
Ensembl chr 1:106,302,574...106,331,385
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:433,990...481,018
Ensembl chr26:433,879...479,917
JBrowse link
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN2D cyclin dependent kinase inhibitor 2D IEA Ensembl GO_REF:0000107 NCBI chr20:50,607,382...50,609,929
Ensembl chr20:50,607,674...50,609,482
JBrowse link
G CLCF1 cardiotrophin like cytokine factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:50,084,120...50,093,825
Ensembl chr18:50,083,915...50,102,651
JBrowse link
G HROB homologous recombination factor with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr 9:19,230,345...19,245,518
Ensembl chr 9:19,230,399...19,245,624
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025), (PMID:3335506)
(PMID:1730053)
UniProt
UniProtKB
PMID:1730053, PMID:3335506, PMID:24191025 NCBI chr 1:106,302,583...106,331,353
Ensembl chr 1:106,302,574...106,331,385
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr26:433,990...481,018
Ensembl chr26:433,879...479,917
JBrowse link
G POLH DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chr12:12,034,544...12,070,305
Ensembl chr12:12,034,583...12,069,707
JBrowse link
G SIRT1 sirtuin 1 ISO (MGI:MGI:5297784|PMID:17612497) UniProtKB PMID:17612497 MGI:MGI:5297784 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G WRN WRN RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 IEA Ensembl GO_REF:0000107 NCBI chr35:3,103,507...3,127,657
Ensembl chr35:3,103,418...3,127,504
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:23,753,918...23,805,306
Ensembl chr21:23,754,278...23,802,104
JBrowse link
G TREX1 three prime repair exonuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906
JBrowse link
double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit IEA Ensembl GO_REF:0000107 NCBI chr32:7,298,789...7,316,665
Ensembl chr32:7,298,790...7,317,001
JBrowse link
G ACTR5 actin related protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:27,154,283...27,190,947
Ensembl chr24:27,153,314...27,179,191
JBrowse link
G ACTR8 actin related protein 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:36,118,471...36,135,064
Ensembl chr20:36,118,477...36,133,881
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 ISO PMID:19282473
(MGI:MGI:3698695|PMID:17121854)
UniProt
UniProtKB
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chr21:29,719,386...29,741,658
Ensembl chr21:29,719,589...29,759,046
JBrowse link
G APLF aprataxin and PNKP like factor IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr10:67,454,500...67,522,659
Ensembl chr10:67,454,356...67,521,761
JBrowse link
G APTX aprataxin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:50,111,003...50,155,937
Ensembl chr11:50,113,073...50,132,284
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 IEA Ensembl GO_REF:0000107 NCBI chr20:45,466,808...45,474,953
Ensembl chr20:45,466,805...45,473,009
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 IEA Ensembl GO_REF:0000107 NCBI chr17:21,886,127...22,288,513
Ensembl chr17:21,889,862...22,288,504
JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO (MGI:MGI:5545964|PMID:22186889)
(PMID:22186889)
(PMID:17525340), (PMID:17643121), (PMID:19261748)
CACAO
UniProtKB
PMID:17525340, PMID:17643121, PMID:19261748, PMID:22186889 MGI:MGI:5545964 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G BRCA2 BRCA2 DNA repair associated ISO (PMID:16845393)
(MGI:MGI:1100157|PMID:9398843)
(MGI:MGI:3714678|PMID:17476307)
UniProtKB
MGI
PMID:9398843, PMID:16845393, PMID:17476307 MGI:MGI:1100157, MGI:MGI:3714678 NCBI chr25:7,734,450...7,797,851
Ensembl chr25:7,734,453...7,797,815
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:123,081,262...123,143,509 JBrowse link
G CDCA5 cell division cycle associated 5 IEA Ensembl GO_REF:0000107 NCBI chr18:52,115,081...52,129,223
Ensembl chr18:52,115,203...52,120,817
JBrowse link
G CHEK2 checkpoint kinase 2 ISO (PMID:18317453) UniProtKB PMID:18317453 NCBI chr26:22,052,256...22,145,675
Ensembl chr26:21,427,961...22,240,624
JBrowse link
G DCLRE1C DNA cross-link repair 1C IEA Ensembl GO_REF:0000107 NCBI chr 2:21,688,822...21,725,021
Ensembl chr 2:21,688,766...21,724,248
JBrowse link
G DDX1 DEAD-box helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr17:11,432,060...11,467,000
Ensembl chr17:11,432,136...11,466,990
JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L IEA Ensembl GO_REF:0000107 NCBI chr33:25,676,686...25,684,270
Ensembl chr33:25,677,076...25,684,175
JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:26,342,419...26,350,561
Ensembl chr 9:26,344,438...26,349,997
JBrowse link
G EMILIN2 elastin microfibril interfacer 2 IEA InterPro GO_REF:0000002 NCBI chr 7:69,521,430...69,580,963 JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit NOT ISO (MGI:MGI:3770581|PMID:17912366)
(MGI:MGI:2153690|PMID:11707424)
(MGI:MGI:3047512|PMID:15199134)
MGI PMID:11707424, PMID:15199134, PMID:17912366 MGI:MGI:2153690, MGI:MGI:3047512, MGI:MGI:3770581 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 IEA Ensembl GO_REF:0000107 NCBI chr25:29,785,641...29,812,536
Ensembl chr25:29,787,132...29,811,112
JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 ISO (PMID:26807646) UniProtKB PMID:26807646 NCBI chr 8:43,028,537...43,082,038
Ensembl chr 8:43,042,563...43,187,969
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 IEA Ensembl GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 IEA Ensembl GO_REF:0000107 NCBI chr 2:72,313,412...72,417,729
Ensembl chr 2:72,328,362...72,414,058
JBrowse link
G GGN gametogenetin IEA InterPro GO_REF:0000002 NCBI chr 1:114,615,817...114,618,950
Ensembl chr 1:114,615,117...114,618,963
JBrowse link
G INO80 INO80 complex ATPase subunit ISO (PMID:20687897) UniProtKB PMID:20687897 NCBI chr30:8,100,536...8,229,868
Ensembl chr30:8,101,934...8,202,025
JBrowse link
G KAT5 lysine acetyltransferase 5 IEA Ensembl GO_REF:0000107 NCBI chr18:51,499,615...51,507,434
Ensembl chr18:51,499,938...51,576,699
JBrowse link
G LIG3 DNA ligase 3 IEA Ensembl GO_REF:0000107 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
JBrowse link
G LIG4 DNA ligase 4 ISO (PMID:19589734), (PMID:9242410)
(MGI:MGI:3043875|PMID:15175260)
(MGI:MGI:2445902|PMID:12531011)
(MGI:MGI:2445902|PMID:12531011), (MGI:MGI:3043875|PMID:15175260)
(MGI:MGI:3715270|PMID:17554302)
BHF-UCL
MGI
PMID:9242410, PMID:12531011, PMID:15175260, PMID:17554302, PMID:19589734 MGI:MGI:2445902, MGI:MGI:3043875, MGI:MGI:3715270 NCBI chr22:56,980,333...56,987,636
Ensembl chr22:56,980,622...56,983,357
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G MARF1 meiosis regulator and mRNA stability factor 1 ISO (MGI:MGI:5461283|PMID:23090997) MGI PMID:23090997 MGI:MGI:5461283 NCBI chr 6:28,194,771...28,231,908
Ensembl chr 6:28,041,318...28,262,184
JBrowse link
G MEIOC meiosis specific with coiled-coil domain IEA Ensembl GO_REF:0000107 NCBI chr 9:18,795,289...18,814,677
Ensembl chr 9:18,796,799...18,814,682
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease IEA UniProt GO_REF:0000104 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
JBrowse link
G MSH2 mutS homolog 2 IEA Ensembl GO_REF:0000107 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G MTA1 metastasis associated 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:72,752,894...72,772,236
Ensembl chr 8:72,753,178...72,772,762
JBrowse link
G NBN nibrin IEA Ensembl GO_REF:0000107 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563
JBrowse link
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:17,705,966...17,716,743
Ensembl chr15:17,705,975...17,716,094
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 IEA Ensembl GO_REF:0000107 NCBI chr33:25,643,439...25,676,979
Ensembl chr33:25,643,883...25,677,462
JBrowse link
G POLQ DNA polymerase theta ISO (PMID:22135286) UniProtKB PMID:22135286 NCBI chr33:24,713,174...24,837,113
Ensembl chr33:24,714,086...24,837,402
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5288570|PMID:21743440) MGI PMID:21743440 MGI:MGI:5288570 NCBI chr24:19,741,398...19,771,675
Ensembl chr24:19,699,792...19,771,679
JBrowse link
G RAD50 RAD50 double strand break repair protein ISO (PMID:9590181) UniProtKB PMID:9590181 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819
JBrowse link
G RAD54L RAD54 like ISO (MGI:MGI:3043875|PMID:15175260) MGI PMID:15175260 MGI:MGI:3043875 NCBI chr15:14,111,168...14,139,819
Ensembl chr15:14,111,157...14,139,301
JBrowse link
G RNF168 ring finger protein 168 IEA UniProtKB
Ensembl
GO_REF:0000104, GO_REF:0000107 NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
JBrowse link
G RNF8 ring finger protein 8 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G SETX senataxin IEA Ensembl GO_REF:0000107 NCBI chr 9:51,900,004...51,980,694
Ensembl chr 9:51,901,233...51,978,833
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 IEA InterPro GO_REF:0000002 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TBC1D22B TBC1 domain family member 22B IEA UniProt GO_REF:0000104 NCBI chr12:6,289,704...6,367,643
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 8:61,023,564...61,107,599
Ensembl chr 8:61,024,084...61,107,506
JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:22,693,203...22,707,054
Ensembl chr35:22,693,110...22,707,008
JBrowse link
G TNKS1BP1 tankyrase 1 binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr18:38,815,845...38,838,184
Ensembl chr18:38,816,323...38,838,192
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G TRIP13 thyroid hormone receptor interactor 13 ISS UniProtKB GO_REF:0000024 NCBI chr34:11,522,940...11,539,885
Ensembl chr34:11,522,940...11,539,885
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 4:36,339,711...36,467,035
Ensembl chr 4:36,354,922...36,466,880
JBrowse link
G VCP valosin containing protein IEA Ensembl GO_REF:0000107 NCBI chr11:51,636,986...51,651,749
Ensembl chr11:51,637,411...51,651,714
JBrowse link
G WRN WRN RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
G XRCC4 X-ray repair cross complementing 4 IEA InterPro GO_REF:0000002 NCBI chr 3:24,316,598...24,547,463
Ensembl chr 3:24,269,974...24,533,465
JBrowse link
G XRCC5 X-ray repair cross complementing 5 ISO (PMID:19581589)
(MGI:MGI:2445902|PMID:12531011)
BHF-UCL
MGI
PMID:12531011, PMID:19581589 MGI:MGI:2445902 NCBI chr37:23,095,769...23,185,680
Ensembl chr37:23,095,754...23,185,586
JBrowse link
G XRCC6 X-ray repair cross complementing 6 ISO (MGI:MGI:2155497|PMID:11751629) MGI PMID:11751629 MGI:MGI:2155497 NCBI chr10:23,637,905...23,661,618
Ensembl chr10:23,638,237...23,661,480
JBrowse link
G ZGRF1 zinc finger GRF-type containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:32,344,348...32,421,485
Ensembl chr32:32,344,791...32,418,441
JBrowse link
double-strand break repair involved in meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting protein C-terminal helicase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:34,804,285...34,984,640
Ensembl chr 9:34,806,535...34,983,788
JBrowse link
G FANCD2 FA complementation group D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:8,240,270...8,297,269
Ensembl chr20:8,240,311...8,297,568
JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr29:16,424,088...16,462,094
Ensembl chr29:16,426,318...16,460,599
JBrowse link
G SPO11 SPO11 initiator of meiotic double stranded breaks IEA Ensembl GO_REF:0000107 NCBI chr24:42,345,595...42,360,851
Ensembl chr24:42,345,547...42,384,481
JBrowse link
double-strand break repair via alternative nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMCES 5-hydroxymethylcytosine binding, ES cell specific IEA Ensembl GO_REF:0000107 NCBI chr20:2,808,687...2,831,123
Ensembl chr20:2,808,689...2,830,462
JBrowse link
G LIG3 DNA ligase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
JBrowse link
G POLQ DNA polymerase theta IEA Ensembl GO_REF:0000107 NCBI chr33:24,713,174...24,837,113
Ensembl chr33:24,714,086...24,837,402
JBrowse link
double-strand break repair via break-induced replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC7 cell division cycle 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:57,336,165...57,362,478
Ensembl chr 6:57,337,407...57,362,757
JBrowse link
G GINS2 GINS complex subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:66,982,033...66,997,115
Ensembl chr 5:66,982,137...67,000,338
JBrowse link
G GINS4 GINS complex subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:24,055,720...24,068,469
Ensembl chr16:24,056,963...24,069,052
JBrowse link
G MCM2 minichromosome maintenance complex component 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G MCM3 minichromosome maintenance complex component 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:19,924,017...19,945,576
Ensembl chr12:19,920,210...19,945,605
JBrowse link
G MCM4 minichromosome maintenance complex component 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:244,634...261,154
Ensembl chr29:244,656...260,991
JBrowse link
G MCM5 minichromosome maintenance complex component 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:28,721,421...28,738,457
Ensembl chr10:28,721,660...28,738,390
JBrowse link
G MCM6 minichromosome maintenance complex component 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:38,627,154...38,660,312
Ensembl chr19:38,627,183...38,660,280
JBrowse link
G MCM7 minichromosome maintenance complex component 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:9,492,654...9,499,846
Ensembl chr 6:9,492,573...9,499,855
JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:16,424,088...16,462,094
Ensembl chr29:16,426,318...16,460,599
JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:51,396,980...51,404,563
Ensembl chr18:51,396,980...51,402,534
JBrowse link
double-strand break repair via classical nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO (PMID:29545921) UniProt PMID:29545921 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889
JBrowse link
G LIG4 DNA ligase 4 IEA Ensembl GO_REF:0000107 NCBI chr22:56,980,333...56,987,636
Ensembl chr22:56,980,622...56,983,357
JBrowse link
G UVRAG UV radiation resistance associated IEA Ensembl GO_REF:0000107 NCBI chr21:22,505,968...22,821,027
Ensembl chr21:22,507,162...22,820,824
JBrowse link
G XRCC6 X-ray repair cross complementing 6 IEA Ensembl GO_REF:0000107 NCBI chr10:23,637,905...23,661,618
Ensembl chr10:23,638,237...23,661,480
JBrowse link
G ZBTB7A zinc finger and BTB domain containing 7A IEA Ensembl GO_REF:0000107 NCBI chr20:55,517,531...55,527,071
Ensembl chr20:55,505,916...55,523,736
JBrowse link
double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP5S1 adaptor related protein complex 5 subunit sigma 1 IEA Ensembl GO_REF:0000107 NCBI chr24:17,537,539...17,543,834
Ensembl chr24:17,537,544...17,543,901
JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:12,847,699...12,858,769
Ensembl chr 6:12,847,713...12,858,681
JBrowse link
G ATM ATM serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G AUNIP aurora kinase A and ninein interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 2:74,097,435...74,116,824
Ensembl chr 2:74,097,508...74,118,085
JBrowse link
G BLM BLM RecQ like helicase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G BRCA1 BRCA1 DNA repair associated IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G BRCA2 BRCA2 DNA repair associated IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr25:7,734,450...7,797,851
Ensembl chr25:7,734,453...7,797,815
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:43,028,537...43,082,038
Ensembl chr 8:43,042,563...43,187,969
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:38,013,744...38,053,096
Ensembl chr 3:38,013,739...38,052,202
JBrowse link
G FBH1 F-box DNA helicase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:30,047,994...30,095,761
Ensembl chr 2:30,048,567...30,095,696
JBrowse link
G GALNT16 polypeptide N-acetylgalactosaminyltransferase 16 IEA Ensembl GO_REF:0000107 NCBI chr 8:43,099,717...43,189,995
Ensembl chr 8:43,042,563...43,187,969
JBrowse link
G GEN1 GEN1 Holliday junction 5' flap endonuclease IEA Ensembl GO_REF:0000107 NCBI chr17:13,201,540...13,233,028
Ensembl chr17:13,201,777...13,232,120
JBrowse link
G H2AX H2A.X variant histone IEA Ensembl GO_REF:0000107 NCBI chr 5:14,765,625...14,766,590
Ensembl chr 5:14,766,126...14,766,557
JBrowse link
G HELQ helicase, POLQ like IEA Ensembl GO_REF:0000107 NCBI chr32:7,245,867...7,290,138
Ensembl chr32:7,245,230...7,290,014
JBrowse link
G HUS1 HUS1 checkpoint clamp component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:93,596...104,908
Ensembl chr16:93,626...125,597
JBrowse link
G INO80 INO80 complex ATPase subunit IEA Ensembl GO_REF:0000107 NCBI chr30:8,100,536...8,229,868
Ensembl chr30:8,101,934...8,202,025
JBrowse link
G KASH5 KASH domain containing 5 IEA Ensembl GO_REF:0000107 NCBI chr 1:107,074,010...107,114,460
Ensembl chr 1:107,074,010...107,097,762
JBrowse link
G KDM4D lysine demethylase 4D IEA Ensembl GO_REF:0000107 NCBI chr21:6,002,292...6,037,344
Ensembl chr21:5,987,723...6,004,783
JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr24:15,850,602...15,893,452
Ensembl chr24:15,814,770...15,893,458
JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:58,746,637...58,862,550
Ensembl chr 1:58,767,159...58,859,282
JBrowse link
G MEIOB meiosis specific with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr 6:39,048,335...39,075,957
Ensembl chr 6:39,048,278...39,076,035
JBrowse link
G MMS22L MMS22 like, DNA repair protein IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr12:55,584,884...55,713,996
Ensembl chr12:55,588,888...55,713,341
JBrowse link
G MORF4L1 mortality factor 4 like 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:58,127,152...58,149,709
Ensembl chr 3:58,127,669...58,193,005
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
JBrowse link
G NABP1 nucleic acid binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr37:2,157,357...2,163,812
Ensembl chr37:2,157,356...2,161,091
JBrowse link
G NABP2 nucleic acid binding protein 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr10:546,964...551,360
Ensembl chr10:546,964...551,107
JBrowse link
G NBN nibrin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563
JBrowse link
G NSMCE1 NSE1 homolog, SMC5-SMC6 complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:19,330,815...19,363,240
Ensembl chr 6:19,330,843...19,363,239
JBrowse link
G NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr13:23,078,143...23,288,302
Ensembl chr13:23,078,173...23,288,304
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:2,157,109...2,188,543
Ensembl chr38:2,160,233...2,170,560
JBrowse link
G PALB2 partner and localizer of BRCA2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:22,209,711...22,237,798
Ensembl chr 6:22,209,384...22,237,745
JBrowse link
G POLL DNA polymerase lambda IEA Ensembl GO_REF:0000107 NCBI chr28:14,193,065...14,201,312
Ensembl chr28:14,193,067...14,201,334
JBrowse link
G POLN DNA polymerase nu IEA Ensembl GO_REF:0000107 NCBI chr 3:61,946,295...62,104,112
Ensembl chr 3:61,962,193...62,102,264
JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 IEA Ensembl GO_REF:0000107 NCBI chr36:6,883,612...6,985,291
Ensembl chr36:6,889,622...6,984,974
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5428050|PMID:22711701) MGI PMID:22711701 MGI:MGI:5428050 NCBI chr24:19,741,398...19,771,675
Ensembl chr24:19,699,792...19,771,679
JBrowse link
G RAD51 RAD51 recombinase ISS UniProtKB GO_REF:0000024 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G RAD51B RAD51 paralog B IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 8:41,779,435...42,357,362
Ensembl chr 8:41,778,714...42,357,298
JBrowse link
G RAD51C RAD51 paralog C ISO (PMID:23149936) UniProtKB PMID:23149936 NCBI chr 9:33,289,675...33,347,411
Ensembl chr 9:33,289,742...33,326,405
JBrowse link
G RAD51D RAD51 paralog D IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:38,242,178...38,259,788
Ensembl chr 9:38,222,051...38,365,621
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
G RAD54B RAD54 homolog B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:39,096,680...39,195,054
Ensembl chr29:39,098,098...39,195,112
JBrowse link
G RAD54L RAD54 like ISO (MGI:MGI:3836659|PMID:19061978)
(MGI:MGI:3615835|PMID:16428451)
MGI PMID:16428451, PMID:19061978 MGI:MGI:3615835, MGI:MGI:3836659 NCBI chr15:14,111,168...14,139,819
Ensembl chr15:14,111,157...14,139,301
JBrowse link
G RBBP8 RB binding protein 8, endonuclease IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 7:65,218,288...65,319,696
Ensembl chr 7:65,218,297...65,297,099
JBrowse link
G REC8 REC8 meiotic recombination protein ISO (MGI:MGI:5428050|PMID:22711701) MGI PMID:22711701 MGI:MGI:5428050 NCBI chr 8:4,165,637...4,171,488
Ensembl chr 8:4,165,879...4,171,486
JBrowse link
G RECQL RecQ like helicase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:25,590,326...25,636,304
Ensembl chr27:25,590,831...25,636,685
JBrowse link
G RECQL5 RecQ like helicase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:67,776,285...67,953,337
Ensembl chr12:67,756,924...67,953,553
JBrowse link
G RFWD3 ring finger and WD repeat domain 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:75,960,909...76,001,088
Ensembl chr 5:75,960,955...76,000,467
JBrowse link
G RMI1 RecQ mediated genome instability 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:75,481,650...75,499,284
Ensembl chr 1:75,481,708...75,484,576
JBrowse link
G RNF138 ring finger protein 138 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:57,521,416...57,554,793
Ensembl chr 7:57,523,595...57,556,005
JBrowse link
G RPA1 replication protein A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G RPA2 replication protein A2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:23,230,447...23,234,554
Ensembl chr11:2,893,352...2,893,717
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA Ensembl GO_REF:0000107 NCBI chr24:25,623,997...25,676,336
Ensembl chr24:25,626,134...25,680,902
JBrowse link
G SEM1 SEM1, 26S proteasome complex subunit ISO (MGI:MGI:3525800|PMID:15359272) MGI PMID:15359272 MGI:MGI:3525800 NCBI chr14:21,767,105...21,790,229 JBrowse link
G SFPQ splicing factor proline and glutamine rich IEA Ensembl GO_REF:0000107 NCBI chr15:6,879,955...6,896,309
Ensembl chr15:6,880,065...6,888,004
JBrowse link
G SFR1 SWI5 dependent homologous recombination repair protein 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr28:16,436,261...16,440,219
Ensembl chr28:16,436,377...16,439,742
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:18,171,190...18,174,577 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IEA Ensembl GO_REF:0000107 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
G SMC5 structural maintenance of chromosomes 5 IEA InterPro GO_REF:0000002 NCBI chr 1:87,192,988...87,285,678
Ensembl chr 1:87,194,867...87,285,606
JBrowse link
G SPIDR scaffold protein involved in DNA repair IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:79,188...503,687
Ensembl chr35:79,185...514,797
JBrowse link
G SWI5 SWI5 homologous recombination repair protein ISO (PMID:21252223)
(MGI:MGI:4868525|PMID:20976249)
UniProtKB PMID:20976249, PMID:21252223 MGI:MGI:4868525 NCBI chr 9:55,229,510...55,234,645
Ensembl chr 9:55,229,550...55,234,489
JBrowse link
G SWSAP1 SWIM-type zinc finger 7 associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:49,951,633...49,953,281
Ensembl chr20:49,951,783...49,953,434
JBrowse link
G TONSL tonsoku like, DNA repair protein IEA Ensembl GO_REF:0000107 NCBI chr13:37,846,010...37,857,633
Ensembl chr13:37,846,149...37,857,668
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N ISO (PMID:17349954) HGNC PMID:17349954 NCBI chr15:33,651,478...33,687,049 JBrowse link
G WDR48 WD repeat domain 48 IEA Ensembl GO_REF:0000107 NCBI chr23:8,716,598...8,766,242
Ensembl chr23:8,715,700...8,764,678
JBrowse link
G XRCC2 X-ray repair cross complementing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:16,402,821...16,429,095
Ensembl chr16:16,402,933...16,429,037
JBrowse link
G XRCC3 X-ray repair cross complementing 3 ISO (PMID:23149936) UniProtKB PMID:23149936 NCBI chr 8:71,441,732...71,452,922
Ensembl chr 8:71,442,429...71,449,408
JBrowse link
G YY1 YY1 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr 8:68,539,511...68,572,796
Ensembl chr 8:68,539,353...68,568,058
JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 8:41,714,654...41,777,996
Ensembl chr 8:41,715,485...41,777,422
JBrowse link
G ZSWIM7 zinc finger SWIM-type containing 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:39,868,086...39,883,693
Ensembl chr 5:39,868,123...39,882,557
JBrowse link
double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYREN cell cycle regulator of NHEJ IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:12,994,508...13,003,632
Ensembl chr16:12,994,479...12,998,435
JBrowse link
G DCLRE1A DNA cross-link repair 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:24,704,044...24,724,561
Ensembl chr28:24,669,733...24,723,841
JBrowse link
G DCLRE1B DNA cross-link repair 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:51,711,267...51,716,806
Ensembl chr17:51,711,284...51,716,345
JBrowse link
G DCLRE1C DNA cross-link repair 1C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:21,688,822...21,725,021
Ensembl chr 2:21,688,766...21,724,248
JBrowse link
G DNTT DNA nucleotidylexotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:9,729,812...9,759,019
Ensembl chr28:9,729,814...9,759,008
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:14690602) BHF-UCL PMID:14690602 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G KDM2A lysine demethylase 2A IEA Ensembl GO_REF:0000107 NCBI chr18:50,178,511...50,294,097
Ensembl chr18:50,181,024...50,291,127
JBrowse link
G LIG1 DNA ligase 1 ISO (MGI:MGI:5014103|PMID:21655080) MGI PMID:21655080 MGI:MGI:5014103 NCBI chr 1:108,105,523...108,143,954
Ensembl chr 1:108,105,987...108,143,953
JBrowse link
G LIG3 DNA ligase 3 ISO (MGI:MGI:5014103|PMID:21655080) MGI PMID:21655080 MGI:MGI:5014103 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
JBrowse link
G LIG4 DNA ligase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:56,980,333...56,987,636
Ensembl chr22:56,980,622...56,983,357
JBrowse link
G MLH1 mutL homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
JBrowse link
G NHEJ1 non-homologous end joining factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr37:25,637,214...25,719,241
Ensembl chr37:25,637,601...25,715,372
JBrowse link
G NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase NOT ISO (PMID:16810316) UniProtKB PMID:16810316 NCBI chr13:23,078,143...23,288,302
Ensembl chr13:23,078,173...23,288,304
JBrowse link
G PAXX PAXX non-homologous end joining factor IEA
IBA
(PMID:21873635) InterPro
Ensembl
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 9:48,637,735...48,639,289
Ensembl chr 9:48,637,731...48,639,239
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902
JBrowse link
G POLB DNA polymerase beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:23,306,359...23,335,352
Ensembl chr16:23,306,367...23,335,322
JBrowse link
G POLL DNA polymerase lambda IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:14,193,065...14,201,312
Ensembl chr28:14,193,067...14,201,334
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895
JBrowse link
G PRPF19 pre-mRNA processing factor 19 IEA Ensembl GO_REF:0000107 NCBI chr18:55,389,902...55,400,241
Ensembl chr18:55,389,897...55,400,240
JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 IEA Ensembl GO_REF:0000107 NCBI chr36:6,883,612...6,985,291
Ensembl chr36:6,889,622...6,984,974
JBrowse link
G RNF8 ring finger protein 8 ISO (MGI:MGI:5293246|PMID:21857671), (MGI:MGI:5465398|PMID:22266820) UniProtKB PMID:21857671, PMID:22266820 MGI:MGI:5293246, MGI:MGI:5465398 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G SETMAR SET domain without mariner transposase fusion ISO (PMID:18263876), (PMID:21187428), (PMID:24573677)
(PMID:16332963)
UniProtKB PMID:16332963, PMID:18263876, PMID:21187428, PMID:24573677 NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020
JBrowse link
G SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 IEA Ensembl GO_REF:0000107 NCBI chr37:23,364,941...23,425,206
Ensembl chr37:23,367,220...23,419,248
JBrowse link
G SMC5 structural maintenance of chromosomes 5 NOT ISO (PMID:16810316) UniProtKB PMID:16810316 NCBI chr 1:87,192,988...87,285,678
Ensembl chr 1:87,194,867...87,285,606
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
JBrowse link
G XRCC1 X-ray repair cross complementing 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
G XRCC4 X-ray repair cross complementing 4 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:24,316,598...24,547,463
Ensembl chr 3:24,269,974...24,533,465
JBrowse link
G XRCC5 X-ray repair cross complementing 5 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr37:23,095,769...23,185,680
Ensembl chr37:23,095,754...23,185,586
JBrowse link
G XRCC6 X-ray repair cross complementing 6 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr10:23,637,905...23,661,618
Ensembl chr10:23,638,237...23,661,480
JBrowse link
double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD52 RAD52 homolog, DNA repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
double-strand break repair via synthesis-dependent strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FANCM FA complementation group M IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:22,561,862...22,625,077
Ensembl chr 8:22,562,147...22,623,994
JBrowse link
G RAD54L RAD54 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:14,111,168...14,139,819
Ensembl chr15:14,111,157...14,139,301
JBrowse link
G XRCC3 X-ray repair cross complementing 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:71,441,732...71,452,922
Ensembl chr 8:71,442,429...71,449,408
JBrowse link
error-free postreplication DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBE2V1 ubiquitin conjugating enzyme E2 V1 ISO (MGI:MGI:2136126|PMID:11406273) MGI PMID:11406273 MGI:MGI:2136126 NCBI chr24:36,570,172...36,601,200
Ensembl chr24:36,570,172...36,603,212
JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 IEA Ensembl GO_REF:0000107 NCBI chr29:307,502...359,058
Ensembl chr29:307,525...357,962
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025) UniProt PMID:24191025 NCBI chr 1:106,302,583...106,331,353
Ensembl chr 1:106,302,574...106,331,385
JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:42,597,792...42,607,576
Ensembl chr 9:42,597,792...42,607,576
JBrowse link
G REV1 REV1 DNA directed polymerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:43,150,885...43,247,324
Ensembl chr10:42,586,394...43,247,328
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 AF4/FMR2 family member 3 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr10:42,587,173...43,111,739
Ensembl chr10:42,586,394...43,247,328
JBrowse link
G POLH DNA polymerase eta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:12,034,544...12,070,305
Ensembl chr12:12,034,583...12,069,707
JBrowse link
G POLK DNA polymerase kappa IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:30,793,893...30,860,240
Ensembl chr 3:30,712,571...30,859,106
JBrowse link
G PRIMPOL primase and DNA directed polymerase IEA Ensembl GO_REF:0000107 NCBI chr16:45,861,244...45,920,183
Ensembl chr16:45,856,042...45,918,761
JBrowse link
G REV1 REV1 DNA directed polymerase IBA
IEA
(PMID:21873635) GO_Central
Ensembl
InterPro
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr10:43,150,885...43,247,324
Ensembl chr10:42,586,394...43,247,328
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:67,776,285...67,953,337
Ensembl chr12:67,756,924...67,953,553
JBrowse link
interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCLRE1A DNA cross-link repair 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:24,704,044...24,724,561
Ensembl chr28:24,669,733...24,723,841
JBrowse link
G DCLRE1B DNA cross-link repair 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:51,711,267...51,716,806
Ensembl chr17:51,711,284...51,716,345
JBrowse link
G DCLRE1C DNA cross-link repair 1C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:21,688,822...21,725,021
Ensembl chr 2:21,688,766...21,724,248
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:5506835|PMID:23637614) MGI PMID:23637614 MGI:MGI:5506835 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC6L2 ERCC excision repair 6 like 2 ISO (PMID:24507776) UniProtKB PMID:24507776 NCBI chr 1:70,793,975...70,918,151
Ensembl chr 1:70,835,410...70,917,962
JBrowse link
G EXO5 exonuclease 5 ISO (PMID:23095756) UniProtKB PMID:23095756 NCBI chr15:2,497,292...2,502,776 JBrowse link
G FAAP100 FA core complex associated protein 100 IEA InterPro GO_REF:0000002 NCBI chr 9:607,198...615,932
Ensembl chr 9:607,135...616,159
JBrowse link
G FAAP20 FA core complex associated protein 20 ISO (PMID:22266823), (PMID:22396592), (PMID:22705371) UniProtKB PMID:22266823, PMID:22396592, PMID:22705371 NCBI chr 5:57,114,784...57,122,854 JBrowse link
G FAAP24 FA core complex associated protein 24 IEA InterPro GO_REF:0000002 NCBI chr 1:119,119,920...119,124,964
Ensembl chr 1:119,120,463...119,124,038
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:38,013,744...38,053,096
Ensembl chr 3:38,013,739...38,052,202
JBrowse link
G FANCA FA complementation group A IEA InterPro GO_REF:0000002 NCBI chr 5:63,778,149...63,838,869
Ensembl chr 5:63,778,212...63,838,823
JBrowse link
G FANCB FA complementation group B IEA InterPro GO_REF:0000002 NCBI chr  X:10,690,826...11,140,838
Ensembl chr  X:11,095,200...11,141,029
JBrowse link
G FANCC FA complementation group C IEA InterPro GO_REF:0000002 NCBI chr 1:71,388,931...71,678,019
Ensembl chr 1:71,487,601...71,678,506
JBrowse link
G FANCD2 FA complementation group D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:8,240,270...8,297,269
Ensembl chr20:8,240,311...8,297,568
JBrowse link
G FANCE FA complementation group E IEA InterPro GO_REF:0000002 NCBI chr12:4,587,053...4,600,946
Ensembl chr12:4,587,041...4,600,405
JBrowse link
G FANCF FA complementation group F IEA InterPro GO_REF:0000002 NCBI chr21:44,253,308...44,256,221
Ensembl chr21:44,255,134...44,256,618
JBrowse link
G FANCG FA complementation group G IEA InterPro GO_REF:0000002 NCBI chr11:51,652,939...51,659,766
Ensembl chr11:51,652,944...51,659,751
JBrowse link
G FANCL FA complementation group L IEA InterPro GO_REF:0000002 NCBI chr10:58,521,480...58,637,352
Ensembl chr10:58,521,552...58,637,482
JBrowse link
G FANCM FA complementation group M IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:22,561,862...22,625,077
Ensembl chr 8:22,562,147...22,623,994
JBrowse link
G HROB homologous recombination factor with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr 9:19,230,345...19,245,518
Ensembl chr 9:19,230,399...19,245,624
JBrowse link
G MSH6 mutS homolog 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:49,825,330...49,838,036
Ensembl chr10:49,803,898...49,838,028
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:2,157,109...2,188,543
Ensembl chr38:2,160,233...2,170,560
JBrowse link
G POLN DNA polymerase nu IEA Ensembl GO_REF:0000107 NCBI chr 3:61,946,295...62,104,112
Ensembl chr 3:61,962,193...62,102,264
JBrowse link
G RAD51 RAD51 recombinase ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G RAD51D RAD51 paralog D ISO (MGI:MGI:3574680|PMID:15781618) MGI PMID:15781618 MGI:MGI:3574680 NCBI chr 9:38,242,178...38,259,788
Ensembl chr 9:38,222,051...38,365,621
JBrowse link
G RFWD3 ring finger and WD repeat domain 3 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 5:75,960,909...76,001,088
Ensembl chr 5:75,960,955...76,000,467
JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
G XRCC3 X-ray repair cross complementing 3 IEA Ensembl GO_REF:0000107 NCBI chr 8:71,441,732...71,452,922
Ensembl chr 8:71,442,429...71,449,408
JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr29:16,424,088...16,462,094
Ensembl chr29:16,426,318...16,460,599
JBrowse link
meiotic DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLX4 SLX4 structure-specific endonuclease subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
G SPO11 SPO11 initiator of meiotic double stranded breaks IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:42,345,595...42,360,851
Ensembl chr24:42,345,547...42,384,481
JBrowse link
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting protein C-terminal helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:34,804,285...34,984,640
Ensembl chr 9:34,806,535...34,983,788
JBrowse link
G C8H14orf39 chromosome 8 C14orf39 homolog IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:35,486,476...35,542,214
Ensembl chr 8:35,487,228...35,542,218
JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51C RAD51 paralog C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:33,289,675...33,347,411
Ensembl chr 9:33,289,742...33,326,405
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102152531 synaptonemal complex protein 3-like ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G SPATA22 spermatogenesis associated 22 IEA InterPro GO_REF:0000002 NCBI chr 9:47,322,817...47,338,202
Ensembl chr 9:47,322,820...47,338,108
JBrowse link
G SYCP1 synaptonemal complex protein 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:52,538,909...52,681,495
Ensembl chr17:52,539,615...52,648,133
JBrowse link
G TEX12 testis expressed 12 IEA Ensembl GO_REF:0000107 NCBI chr 5:20,968,201...20,972,710
Ensembl chr 5:20,968,185...20,972,850
JBrowse link
meiotic mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G MSH3 mutS homolog 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:26,335,788...26,520,633
Ensembl chr 3:26,336,403...26,518,521
JBrowse link
G MSH4 mutS homolog 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:70,745,777...70,822,507
Ensembl chr 6:70,746,634...70,823,004
JBrowse link
G MSH5 mutS homolog 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:1,221,278...1,243,042 JBrowse link
G MSH6 mutS homolog 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:49,825,330...49,838,036
Ensembl chr10:49,803,898...49,838,028
JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chr29:16,424,088...16,462,094
Ensembl chr29:16,426,318...16,460,599
JBrowse link
mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXO1 exonuclease 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:33,237,124...33,268,835
Ensembl chr 7:33,237,593...33,268,254
JBrowse link
G MLH1 mutL homolog 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G MLH3 mutL homolog 3 IEA
IBA
(PMID:21873635) InterPro
Ensembl
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 8:48,123,263...48,153,989
Ensembl chr 8:48,124,105...48,154,102
JBrowse link
G MSH2 mutS homolog 2 IBA
IEA
(PMID:21873635) GO_Central
InterPro
UniProt
PMID:21873635 GO_REF:0000002, GO_REF:0000104 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G MSH3 mutS homolog 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:26,335,788...26,520,633
Ensembl chr 3:26,336,403...26,518,521
JBrowse link
G MSH5 mutS homolog 5 IEA InterPro GO_REF:0000002 NCBI chr12:1,221,278...1,243,042 JBrowse link
G MSH6 mutS homolog 6 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr10:49,825,330...49,838,036
Ensembl chr10:49,803,898...49,838,028
JBrowse link
G MUTYH mutY DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:15,018,345...15,026,539
Ensembl chr15:14,906,543...15,026,539
JBrowse link
G PCNA proliferating cell nuclear antigen IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component IBA
IEA
(PMID:21873635) GO_Central
Ensembl
InterPro
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr37:502,752...609,640
Ensembl chr37:502,747...790,904
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 6:11,411,062...11,438,767
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G RNASEH2A ribonuclease H2 subunit A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:49,345,258...49,352,944
Ensembl chr20:49,345,266...49,355,167
JBrowse link
G RPA1 replication protein A1 IEA Ensembl GO_REF:0000107 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G RPA2 replication protein A2 IEA Ensembl GO_REF:0000107 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:23,230,447...23,234,554
Ensembl chr11:2,893,352...2,893,717
JBrowse link
G RSPH10B radial spoke head 10 homolog B IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:11,352,150...11,410,937
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612
JBrowse link
G TDG thymine DNA glycosylase IEA Ensembl GO_REF:0000107 NCBI chr15:42,493,593...42,516,868
Ensembl chr15:42,493,737...42,515,448
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:4,299,644...4,328,826
Ensembl chr20:4,300,386...4,328,768
JBrowse link
mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCM9 minichromosome maintenance 9 homologous recombination repair factor IEA Ensembl GO_REF:0000107 NCBI chr 1:58,746,637...58,862,550
Ensembl chr 1:58,767,159...58,859,282
JBrowse link
mitochondrial DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 ISO (MGI:MGI:5516376|PMID:24101517) MGI PMID:24101517 MGI:MGI:5516376 NCBI chr20:4,268,670...4,281,624
Ensembl chr20:4,267,683...4,281,549
JBrowse link
G DNA2 DNA replication helicase/nuclease 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:19,626,001...19,683,819
Ensembl chr 4:19,626,977...19,684,660
JBrowse link
G LIG3 DNA ligase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G PRIMPOL primase and DNA directed polymerase IEA Ensembl GO_REF:0000107 NCBI chr16:45,861,244...45,920,183
Ensembl chr16:45,856,042...45,918,761
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
mitochondrial double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MRE11 MRE11 homolog, double strand break repair nuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPS3 ribosomal protein S3 ISO (PMID:17049931) UniProtKB PMID:17049931 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUB1 OTU domain, ubiquitin aldehyde binding 1 ISO (PMID:20725033) UniProtKB PMID:20725033 NCBI chr 3:40,225,531...40,226,507
Ensembl chr 3:40,225,474...40,226,612
JBrowse link
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:53,033,623...53,041,011
Ensembl chr18:53,034,387...53,041,481
JBrowse link
G OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:63,094,378...63,114,028
Ensembl chr 8:63,095,238...63,118,441
JBrowse link
G RNF169 ring finger protein 169 IEA Ensembl GO_REF:0000107 NCBI chr21:23,574,478...23,655,305
Ensembl chr21:23,579,370...23,655,290
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 IEA Ensembl GO_REF:0000107 NCBI chr25:42,060,103...42,208,326
Ensembl chr25:42,060,991...42,208,054
JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 IEA Ensembl GO_REF:0000107 NCBI chr13:3,887,408...4,023,364
Ensembl chr13:3,879,220...4,023,955
JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CGAS cyclic GMP-AMP synthase IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:35,511,920...35,528,759
Ensembl chr12:35,512,860...35,528,596
JBrowse link
G FANCB FA complementation group B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:10,690,826...11,140,838
Ensembl chr  X:11,095,200...11,141,029
JBrowse link
G FBH1 F-box DNA helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:30,047,994...30,095,761
Ensembl chr 2:30,048,567...30,095,696
JBrowse link
G HELB DNA helicase B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:8,766,023...8,797,055
Ensembl chr10:8,765,617...8,798,092
JBrowse link
G KLHL15 kelch like family member 15 IEA Ensembl GO_REF:0000107 NCBI chr  X:19,617,629...19,651,076
Ensembl chr  X:19,618,569...19,650,728
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G MAGEF1 MAGE family member F1 IEA Ensembl GO_REF:0000107 NCBI chr34:17,543,381...17,545,089
Ensembl chr34:17,543,906...17,544,868
JBrowse link
G PARPBP PARP1 binding protein IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:40,972,098...41,039,044
Ensembl chr15:40,976,598...41,036,068
JBrowse link
G POLQ DNA polymerase theta IEA Ensembl GO_REF:0000107 NCBI chr33:24,713,174...24,837,113
Ensembl chr33:24,714,086...24,837,402
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked IEA Ensembl GO_REF:0000107 NCBI chr  X:80,146,335...80,234,732
Ensembl chr  X:80,146,040...80,235,739
JBrowse link
G RECQL5 RecQ like helicase 5 IEA Ensembl GO_REF:0000107 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436
JBrowse link
G RIF1 replication timing regulatory factor 1 IEA Ensembl GO_REF:0000107 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G RMI2 RecQ mediated genome instability 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:31,440,493...31,445,318
Ensembl chr 6:31,441,517...31,445,310
JBrowse link
G SHLD1 shieldin complex subunit 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
JBrowse link
G SHLD2 shieldin complex subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
JBrowse link
G UBQLN4 ubiquilin 4 IEA Ensembl GO_REF:0000107 NCBI chr 7:41,764,209...41,778,457
Ensembl chr 7:41,764,253...41,777,002
JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUNIP aurora kinase A and ninein interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 2:74,097,435...74,116,824
Ensembl chr 2:74,097,508...74,118,085
JBrowse link
G CYREN cell cycle regulator of NHEJ IEA Ensembl GO_REF:0000107 NCBI chr16:12,994,508...13,003,632
Ensembl chr16:12,994,479...12,998,435
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:19549901) UniProtKB PMID:19549901 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HSF1 heat shock transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:36,711,351...36,713,931
Ensembl chr 6:36,711,671...36,713,896
JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase IEA Ensembl GO_REF:0000107 NCBI chr20:8,486,150...8,491,448
Ensembl chr20:8,480,005...8,491,264
JBrowse link
non-recombinational repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G REXO4 REX4 homolog, 3'-5' exonuclease IEA Ensembl GO_REF:0000107 NCBI chr 9:49,827,584...49,834,872
Ensembl chr 9:49,828,067...49,836,632
JBrowse link
nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA2 BRCA2 DNA repair associated IEA Ensembl GO_REF:0000107 NCBI chr25:7,734,450...7,797,851
Ensembl chr25:7,734,453...7,797,815
JBrowse link
G BRIP1 BRCA1 interacting protein C-terminal helicase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:34,804,285...34,984,640
Ensembl chr 9:34,806,535...34,983,788
JBrowse link
G CETN1 centrin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:67,431,020...67,431,774
Ensembl chr 7:67,431,081...67,431,599
JBrowse link
G CETN2 centrin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:120,714,676...120,720,012 JBrowse link
G COMMD1 copper metabolism domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr10:61,886,281...62,059,610
Ensembl chr10:61,886,281...62,059,591
JBrowse link
G DCLRE1A DNA cross-link repair 1A ISO (MGI:MGI:1859725|PMID:10848582) MGI PMID:10848582 MGI:MGI:1859725 NCBI chr28:24,704,044...24,724,561
Ensembl chr28:24,669,733...24,723,841
JBrowse link
G DDB1 damage specific DNA binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:55,064,720...55,097,623
Ensembl chr18:55,064,729...55,097,627
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:3290851)
(PMID:11707424)
(MGI:MGI:63544|PMID:8275084)
MGI PMID:3290851, PMID:8275084, PMID:11707424 MGI:MGI:63544 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IEA InterPro GO_REF:0000002 NCBI chr 1:110,173,781...110,191,612
Ensembl chr 1:110,173,715...110,190,125
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:17509950) UniProtKB PMID:17509950 NCBI chr19:23,310,911...23,344,083
Ensembl chr19:23,310,986...23,337,683
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:8797827)
(PMID:10644440)
UniProtKB
MGI
PMID:8797827, PMID:10644440 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IEA InterPro GO_REF:0000002 NCBI chr22:52,339,011...52,372,618 JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO (PMID:17297471) UniProtKB PMID:17297471 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603016) UniProtKB PMID:20603016 NCBI chr 3:38,013,744...38,053,096
Ensembl chr 3:38,013,739...38,052,202
JBrowse link
G FANCC FA complementation group C IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:71,388,931...71,678,019
Ensembl chr 1:71,487,601...71,678,506
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 IEA InterPro GO_REF:0000002 NCBI chr21:40,770,661...40,807,329
Ensembl chr21:40,770,983...40,806,556
JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000104 NCBI chr 2:54,553,871...54,579,695
Ensembl chr 2:54,554,578...54,628,670
JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 IEA InterPro GO_REF:0000002 NCBI chr26:5,985,094...6,011,253
Ensembl chr26:5,985,798...6,011,163
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:675,960...681,504
Ensembl chr12:675,983...681,425
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:47,669,196...47,681,370
Ensembl chr 1:47,669,248...47,681,368
JBrowse link
G HUS1 HUS1 checkpoint clamp component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:93,596...104,908
Ensembl chr16:93,626...125,597
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase IEA InterPro GO_REF:0000002 NCBI chr 8:35,747,883...35,946,353
Ensembl chr 8:35,756,933...35,946,353
JBrowse link
G NEIL1 nei like DNA glycosylase 1 IEA InterPro GO_REF:0000002 NCBI chr30:38,213,429...38,218,132
Ensembl chr30:38,213,250...38,218,130
JBrowse link
G NEIL2 nei like DNA glycosylase 2 IEA InterPro GO_REF:0000002 NCBI chr25:26,102,652...26,117,418
Ensembl chr25:26,103,111...26,117,544
JBrowse link
G NEIL3 nei like DNA glycosylase 3 IEA InterPro GO_REF:0000002 NCBI chr16:52,383,585...52,472,398
Ensembl chr16:52,387,389...52,436,173
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase IEA InterPro GO_REF:0000002 NCBI chr20:8,486,150...8,491,448
Ensembl chr20:8,480,005...8,491,264
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1508673) UniProtKB PMID:1508673 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902
JBrowse link
G POLL DNA polymerase lambda IEA Ensembl GO_REF:0000107 NCBI chr28:14,193,065...14,201,312
Ensembl chr28:14,193,067...14,201,334
JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein IEA UniProt
Ensembl
GO_REF:0000104, GO_REF:0000107 NCBI chr20:49,244,330...49,250,058
Ensembl chr20:49,241,358...49,250,039
JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein ISO (PMID:8168482), (PMID:9734359) UniProtKB PMID:8168482, PMID:9734359 NCBI chr11:62,732,989...62,778,957
Ensembl chr11:62,732,984...62,775,978
JBrowse link
G RAD51D RAD51 paralog D NOT ISO (MGI:MGI:4430476|PMID:19327148) MGI PMID:19327148 MGI:MGI:4430476 NCBI chr 9:38,242,178...38,259,788
Ensembl chr 9:38,222,051...38,365,621
JBrowse link
G RPA1 replication protein A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G RPA2 replication protein A2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:23,230,447...23,234,554
Ensembl chr11:2,893,352...2,893,717
JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IEA Ensembl GO_REF:0000107 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
G TP53 tumor protein p53 ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IEA InterPro GO_REF:0000002 NCBI chr11:54,976,978...54,996,140
Ensembl chr11:54,976,976...54,996,065
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:4,299,644...4,328,826
Ensembl chr20:4,300,386...4,328,768
JBrowse link
nucleotide-excision repair involved in interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:54,976,978...54,996,140
Ensembl chr11:54,976,976...54,996,065
JBrowse link
nucleotide-excision repair, DNA damage recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD23B RAD23 homolog B, nucleotide excision repair protein IEA Ensembl GO_REF:0000107 NCBI chr11:62,732,989...62,778,957
Ensembl chr11:62,732,984...62,775,978
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:54,976,978...54,996,140
Ensembl chr11:54,976,976...54,996,065
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IEA Ensembl GO_REF:0000107 NCBI chr20:4,299,644...4,328,826
Ensembl chr20:4,300,386...4,328,768
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:110,173,781...110,191,612
Ensembl chr 1:110,173,715...110,190,125
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IEA Ensembl GO_REF:0000107 NCBI chr19:23,310,911...23,344,083
Ensembl chr19:23,310,986...23,337,683
JBrowse link
nucleotide-excision repair, DNA gap filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIG4 DNA ligase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:56,980,333...56,987,636
Ensembl chr22:56,980,622...56,983,357
JBrowse link
G POLB DNA polymerase beta NOT ISO (PMID:20227374) UniProtKB PMID:20227374 NCBI chr16:23,306,359...23,335,352
Ensembl chr16:23,306,367...23,335,322
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:106,302,583...106,331,353
Ensembl chr 1:106,302,574...106,331,385
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:23,753,918...23,805,306
Ensembl chr21:23,754,278...23,802,104
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr26:433,990...481,018
Ensembl chr26:433,879...479,917
JBrowse link
G POLK DNA polymerase kappa IEA Ensembl GO_REF:0000107 NCBI chr 3:30,793,893...30,860,240
Ensembl chr 3:30,712,571...30,859,106
JBrowse link
nucleotide-excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:110,173,781...110,191,612
Ensembl chr 1:110,173,715...110,190,125
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:23,310,911...23,344,083
Ensembl chr19:23,310,986...23,337,683
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:10413517) UniProtKB PMID:10413517 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:38,013,744...38,053,096
Ensembl chr 3:38,013,739...38,052,202
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase IEA Ensembl GO_REF:0000107 NCBI chr20:8,486,150...8,491,448
Ensembl chr20:8,480,005...8,491,264
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:54,976,978...54,996,140
Ensembl chr11:54,976,976...54,996,065
JBrowse link
nucleotide-excision repair, DNA incision, 3'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:7657672) UniProtKB PMID:7657672 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO (PMID:7657672)
(PMID:8090225)
UniProtKB PMID:7657672, PMID:8090225 NCBI chr22:52,339,011...52,372,618 JBrowse link
nucleotide-excision repair, DNA incision, 5'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G NTHL1 nth like DNA glycosylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:38,899,144...38,904,637
Ensembl chr 6:38,899,126...38,905,622
JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2H5 general transcription factor IIH subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:47,669,196...47,681,370
Ensembl chr 1:47,669,248...47,681,368
JBrowse link
photoreactive repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRY2 cryptochrome circadian regulator 2 NOT ISO (PMID:12627958) UniProtKB PMID:12627958 NCBI chr18:43,538,335...43,573,651
Ensembl chr18:43,539,612...43,573,875
JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr21:24,644,700...24,832,307
Ensembl chr21:24,768,108...24,827,784
JBrowse link
G RPS3 ribosomal protein S3 ISO (PMID:18973764) UniProtKB PMID:18973764 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit IEA Ensembl GO_REF:0000107 NCBI chr32:7,298,789...7,316,665
Ensembl chr32:7,298,790...7,317,001
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 ISO PMID:19282473
(MGI:MGI:3698695|PMID:17121854)
UniProt
UniProtKB
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chr21:29,719,386...29,741,658
Ensembl chr21:29,719,589...29,759,046
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 IEA Ensembl GO_REF:0000107 NCBI chr20:45,466,808...45,474,953
Ensembl chr20:45,466,805...45,473,009
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 IEA Ensembl GO_REF:0000107 NCBI chr17:21,886,127...22,288,513
Ensembl chr17:21,889,862...22,288,504
JBrowse link
G BRCA1 BRCA1 DNA repair associated IEA Ensembl GO_REF:0000107 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 ISO (PMID:17525341), (PMID:19261746), (PMID:19261748) UniProtKB PMID:17525341, PMID:19261746, PMID:19261748 NCBI chr  X:123,081,262...123,143,509 JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr 9:1,839,701...1,842,355
Ensembl chr 9:1,839,096...1,843,099
JBrowse link
G CEBPG CCAAT enhancer binding protein gamma IEA Ensembl GO_REF:0000107 NCBI chr 1:118,777,110...118,784,397
Ensembl chr 1:118,778,224...118,778,667
JBrowse link
G DHX9 DExH-box helicase 9 IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G EGFR epidermal growth factor receptor IEA Ensembl GO_REF:0000107 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:22483866) UniProt PMID:22483866 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:34,126,086...34,308,412
Ensembl chr24:34,082,197...34,308,423
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:72,313,412...72,417,729
Ensembl chr 2:72,328,362...72,414,058
JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:26,208,514...26,514,601
Ensembl chr 1:26,272,448...26,514,201
JBrowse link
G FGF10 fibroblast growth factor 10 IEA Ensembl GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
G NPAS2 neuronal PAS domain protein 2 IEA Ensembl GO_REF:0000107 NCBI chr10:41,846,766...42,005,058
Ensembl chr10:41,847,625...42,005,469
JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr28:1,651,698...1,767,210
Ensembl chr28:1,652,670...1,766,895
JBrowse link
G PCNA proliferating cell nuclear antigen IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G RNF168 ring finger protein 168 IEA UniProtKB
Ensembl
GO_REF:0000104, GO_REF:0000107 NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
JBrowse link
G RNF8 ring finger protein 8 IEA UniProt GO_REF:0000104 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G RPS3 ribosomal protein S3 ISO (PMID:23911537) UniProtKB PMID:23911537 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:19934257) UniProtKB PMID:19934257 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:24790221) UniProtKB PMID:24790221 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TBC1D22B TBC1 domain family member 22B IEA UniProt GO_REF:0